Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 2.3e-111 405.6 207 100.0
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 1.6e-96 356.3 207 88.4
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 6.3e-77 291.2 207 72.9
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 5.2e-71 271.6 199 68.8
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.3e-69 266.9 206 68.9
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 8.2e-69 264.2 199 69.8
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 1.1e-65 253.8 193 69.4
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 9.4e-65 250.8 188 68.6
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 2.1e-64 249.6 206 64.1
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 2.1e-64 249.6 206 65.5
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.1e-64 249.6 199 67.3
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 2.7e-64 249.2 199 67.3
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 6.1e-64 248.1 206 66.0
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 6.1e-64 248.1 192 68.2
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 6.1e-64 248.1 206 64.1
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.5e-62 243.4 206 60.7
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 4.4e-62 241.9 189 68.8
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 1.3e-61 240.4 188 67.0
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.2e-61 239.6 210 59.0
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.1e-60 237.3 189 68.3
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.3e-60 235.0 189 67.2
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 9.1e-60 234.2 184 65.2
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 1.2e-59 233.8 199 64.8
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 1.2e-59 233.8 207 58.9
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 2.7e-59 232.6 179 65.4
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.7e-59 232.6 190 65.8
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 4.5e-59 231.9 206 60.7
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.3e-58 230.3 195 65.1
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 2.9e-58 229.2 172 68.0
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 3.8e-58 228.8 193 64.2
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 5.0e-58 228.4 191 62.8
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 8.5e-58 227.6 200 59.0
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 8.5e-58 227.6 206 60.2
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 8.5e-58 227.6 282 47.9
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.1e-57 227.3 173 66.5
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 3.2e-57 225.7 199 62.3
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 3.2e-57 225.7 193 63.7
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.2e-57 225.7 173 69.4
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.2e-56 223.8 164 68.9
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 3.6e-56 222.2 201 58.7
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 4.7e-56 221.9 191 62.3
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 8.0e-56 221.1 199 62.3
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 8.0e-56 221.1 199 62.8
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 1.0e-55 220.7 190 64.2
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 2.3e-55 219.5 182 65.4
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 3.0e-55 219.2 192 60.9
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 6.8e-55 218.0 209 56.5
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 6.8e-55 218.0 177 66.7
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 1.2e-54 217.2 189 59.8
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 4.4e-54 215.3 185 63.8
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 4.4e-54 215.3 199 58.8
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 1.3e-53 213.8 156 71.2
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.7e-53 213.4 196 56.6
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.2e-53 213.0 192 58.9
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 2.2e-53 213.0 203 59.6
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 3.7e-53 212.2 195 57.9
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 3.7e-53 212.2 185 60.0
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 4.8e-53 211.8 205 56.6
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 6.3e-53 211.5 205 56.6
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 6.3e-53 211.5 163 66.9
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 6.3e-53 211.5 203 59.6
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.4e-52 210.3 192 58.3
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 1.8e-52 209.9 168 67.3
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 3.1e-52 209.1 189 58.2
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 3.1e-52 209.1 170 62.4
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.1e-52 209.1 166 66.9
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 5.4e-52 208.4 194 56.2
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.2e-51 207.2 197 56.3
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.6e-51 206.8 189 59.8
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.6e-51 206.8 156 71.2
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.7e-51 206.1 189 58.7
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 2.7e-51 206.1 189 57.1
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 3.5e-51 205.7 185 61.1
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 4.5e-51 205.3 162 65.4
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 4.5e-51 205.3 166 65.1
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 5.9e-51 204.9 193 57.5
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 7.7e-51 204.5 176 59.1
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 1.7e-50 203.4 196 59.7
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 2.3e-50 203.0 165 63.6
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 1.5e-49 200.3 197 58.4
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 1.5e-49 200.3 197 58.4
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 1.5e-49 200.3 197 58.4
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 3.3e-49 199.1 167 64.7
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 5.5e-49 198.4 179 59.8
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 5.5e-49 198.4 178 61.2
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 7.2e-49 198.0 180 59.4
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 1.6e-48 196.8 162 63.6
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.6e-48 196.8 185 57.8
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 2.8e-48 196.1 185 55.7
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 4.7e-48 195.3 167 64.7
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 8.0e-48 194.5 179 58.1
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.0e-47 194.1 216 52.8
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 5.7e-46 188.3 151 63.6
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 8.3e-45 184.5 206 53.4
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.6e-43 180.3 180 56.1
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.7e-42 176.8 164 60.4
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 1.1e-41 174.1 119 69.7
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 1.5e-41 173.7 160 57.5
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 8.0e-40 167.9 119 73.1
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.4e-39 167.2 166 54.2
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.7e-37 160.2 184 51.1
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 1.1e-36 157.5 197 49.2
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.4e-36 157.1 177 52.0
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 1.9e-36 156.8 140 58.6
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 2.4e-36 156.4 144 59.7
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 3.2e-36 156.0 187 47.6
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 7.0e-36 154.8 131 64.9
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 1.2e-35 154.1 198 47.0
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 2.0e-35 153.3 140 57.9
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 7.8e-35 151.4 147 59.9
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 2.3e-34 149.8 196 44.9
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.9e-33 146.7 136 56.6
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 1.4e-31 140.6 175 50.9
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 1.4e-31 140.6 175 50.9
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 2.0e-30 136.7 115 61.7
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 4.9e-29 132.1 156 48.1
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 1.1e-28 131.0 94 69.1
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.2e-27 127.5 142 53.5
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 1.6e-27 127.1 125 60.0
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.1e-25 120.9 128 53.1
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 4.3e-25 119.0 119 54.6
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 8.9e-23 111.3 91 62.6
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 1.7e-21 107.1 198 38.4
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 1.3e-18 97.4 98 54.1
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 3.0e-18 96.3 83 60.2
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 1.5e-17 94.0 184 34.2
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 4.7e-16 89.0 73 58.9
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 2.4e-12 76.6 70 57.1
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 2.1e-11 73.6 96 45.8
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 2.3e-10 70.1 172 36.0
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 1.6e-08 63.9 59 50.8
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 4.7e-08 62.4 45 62.2
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 3.1e-07 59.7 71 47.9
AUR62033068 Chenopodium quinoa HOM05D000002 ORTHO05D000001 4.4e-06 55.8 63 52.4
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-06 55.5 111 30.6


User provided reference genes

Program Settings