Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2653 Acer truncatum HOM05D006706 ORTHO05D008794 5.2e-100 367.9 202 100.0
Ciclev10009845m.g Citrus clementina HOM05D006706 ORTHO05D008794 8.0e-61 237.7 127 89.0
QL12p025335 Quercus lobata HOM05D006706 ORTHO05D008794 1.4e-60 236.9 126 87.3
Potri.018G008000 Populus trichocarpa HOM05D006706 ORTHO05D008794 5.2e-60 235.0 202 63.4
Thecc.09G008100 Theobroma cacao HOM05D006706 ORTHO05D008794 1.5e-59 233.4 202 61.9
Duzib187G1270 Durio zibethinus HOM05D006706 ORTHO05D008794 2.0e-59 233.0 121 89.3
RcHm_v2.0_Chr1g0366021 Rosa chinensis HOM05D006706 ORTHO05D008794 3.4e-59 232.3 207 62.3
FAN27G0070 Fragaria x ananassa HOM05D006706 ORTHO05D008794 7.5e-59 231.1 128 84.4
COL.COLO4_19024 Corchorus olitorius HOM05D006706 ORTHO05D008794 9.8e-59 230.7 118 90.7
FvH4_2g36680 Fragaria vesca HOM05D006706 ORTHO05D008794 2.2e-58 229.6 128 83.6
FAN20G0608 Fragaria x ananassa HOM05D006706 ORTHO05D008794 2.2e-58 229.6 128 83.6
Prupe.1G459500 Prunus persica HOM05D006706 ORTHO05D008794 2.2e-58 229.6 118 90.7
Cpa.g.sc23.24 Carica papaya HOM05D006706 ORTHO05D008794 2.9e-58 229.2 128 83.6
Haze_21755 Corylus avellana HOM05D006706 ORTHO05D008794 2.9e-58 229.2 121 88.4
Haze_21752 Corylus avellana HOM05D006706 ORTHO05D008794 3.7e-58 228.8 121 88.4
CANSAT78G2093 Cannabis sativa HOM05D006706 ORTHO05D008794 4.9e-58 228.4 118 90.7
MD08G1127800 Malus domestica HOM05D006706 ORTHO05D008794 8.3e-58 227.6 123 87.0
Manes.03G004300 Manihot esculenta HOM05D006706 ORTHO05D008794 8.3e-58 227.6 119 89.1
Gorai.010G122100 Gossypium raimondii HOM05D006706 ORTHO05D008794 1.1e-57 227.3 120 89.2
Actinidia22256 Actinidia chinensis HOM05D006706 ORTHO05D008794 1.9e-57 226.5 120 87.5
Cfa013279 Carpinus fangiana HOM05D006706 ORTHO05D008794 1.9e-57 226.5 123 85.4
CiPaw.08G020300 Carya illinoinensis HOM05D006706 ORTHO05D008794 1.9e-57 226.5 121 87.6
ECA246G3311 Erigeron canadensis HOM05D006706 ORTHO05D008794 2.4e-57 226.1 128 81.2
Duzib168G0001 Durio zibethinus HOM05D006706 ORTHO05D008794 3.2e-57 225.7 121 87.6
RcHm_v2.0_Chr6g0305051 Rosa chinensis HOM05D006706 ORTHO05D008794 3.2e-57 225.7 128 84.4
TWI34G0378 Tripterygium wilfordii HOM05D006706 ORTHO05D008794 4.1e-57 225.3 202 61.4
Sabra18G0015100 Salix brachista HOM05D006706 ORTHO05D008794 1.6e-56 223.4 202 61.4
Lj7C748T8 Lonicera japonica HOM05D006706 ORTHO05D008794 2.7e-56 222.6 205 57.6
PSO063G0792 Papaver somniferum HOM05D006706 ORTHO05D008794 2.7e-56 222.6 128 82.0
PSO170G0804 Papaver somniferum HOM05D006706 ORTHO05D008794 2.7e-56 222.6 128 82.0
Rhsim07G0178100 Rhododendron simsii HOM05D006706 ORTHO05D008794 2.7e-56 222.6 119 86.6
Glyma.04G075900 Glycine max HOM05D006706 ORTHO05D008794 4.6e-56 221.9 128 82.0
Solyc12g096390.2 Solanum lycopersicum HOM05D006706 ORTHO05D008794 4.6e-56 221.9 195 61.0
CDE02G4751 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 6.0e-56 221.5 123 84.6
vmacro05047 Vaccinium macrocarpon HOM05D006706 ORTHO05D008794 7.8e-56 221.1 119 87.4
Lj1g0012669 Lotus japonicus HOM05D006706 ORTHO05D008794 1.0e-55 220.7 124 85.5
CSS0022194 Camellia sinensis var. sinensis HOM05D006706 ORTHO05D008794 1.3e-55 220.3 120 86.7
Peaxi162Scf00459g00840 Petunia axillaris HOM05D006706 ORTHO05D008794 1.3e-55 220.3 129 82.2
Ca_15656_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 1.7e-55 219.9 128 82.0
Ca_15664_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 1.7e-55 219.9 128 82.0
arahy.Tifrunner.gnm1.ann1.G0PQAF Arachis hypogaea HOM05D006706 ORTHO05D008794 2.3e-55 219.5 128 79.7
Lalb_Chr23g0269141 Lupinus albus HOM05D006706 ORTHO05D008794 2.3e-55 219.5 128 82.0
THA.LOC104814973 Tarenaya hassleriana HOM05D006706 ORTHO05D008794 3.9e-55 218.8 119 84.9
TPR.G12362 Trifolium pratense HOM05D006706 ORTHO05D008794 5.1e-55 218.4 128 80.5
VMungo1309G0608 Vigna mungo HOM05D006706 ORTHO05D008794 5.1e-55 218.4 123 83.7
arahy.Tifrunner.gnm1.ann1.92NGGW Arachis hypogaea HOM05D006706 ORTHO05D008794 6.6e-55 218.0 128 78.9
CsaV3_2G031370 Cucumis sativus L. HOM05D006706 ORTHO05D008794 1.1e-54 217.2 118 86.4
SalBow4G1165 Salvia bowleyana HOM05D006706 ORTHO05D008794 1.1e-54 217.2 119 83.2
CAN.G566.65 Capsicum annuum HOM05D006706 ORTHO05D008794 2.5e-54 216.1 125 80.8
A03p04700 Brassica napus HOM05D006706 ORTHO05D008794 3.3e-54 215.7 129 79.1
Nitab4.5_0010092g0010 Nicotiana tabacum HOM05D006706 ORTHO05D008794 3.3e-54 215.7 123 81.3
Sopen12g032240 Solanum pennellii HOM05D006706 ORTHO05D008794 3.3e-54 215.7 195 66.2
AT5G10700 Arabidopsis thaliana HOM05D006706 ORTHO05D008794 5.6e-54 214.9 124 80.6
AUR62020287 Chenopodium quinoa HOM05D006706 ORTHO05D008794 5.6e-54 214.9 119 84.9
Dinv26561 Davidia involucrata HOM05D006706 ORTHO05D008794 5.6e-54 214.9 117 86.3
Eucgr.C04010 Eucalyptus grandis HOM05D006706 ORTHO05D008794 5.6e-54 214.9 119 83.2
Thhalv10014763m.g Eutrema salsugineum HOM05D006706 ORTHO05D008794 5.6e-54 214.9 125 80.0
GSVIVG01035513001 Vitis vinifera HOM05D006706 ORTHO05D008794 5.6e-54 214.9 119 82.4
CiPaw.07G211900 Carya illinoinensis HOM05D006706 ORTHO05D008794 7.3e-54 214.5 120 84.2
DCAR_006314 Daucus carota HOM05D006706 ORTHO05D008794 7.3e-54 214.5 118 83.9
HanXRQChr17g0538031 Helianthus annuus HOM05D006706 ORTHO05D008794 7.3e-54 214.5 118 83.9
Lsat_1_v5_gn_3_19441 Lactuca sativa HOM05D006706 ORTHO05D008794 7.3e-54 214.5 128 78.1
AL6G21240 Arabidopsis lyrata HOM05D006706 ORTHO05D008794 9.5e-54 214.2 128 78.1
BraA03t09810Z Brassica rapa HOM05D006706 ORTHO05D008794 9.5e-54 214.2 128 78.1
Nn3g19671 Nelumbo nucifera HOM05D006706 ORTHO05D008794 9.5e-54 214.2 200 58.0
Sp6g32760 Schrenkiella parvula HOM05D006706 ORTHO05D008794 9.5e-54 214.2 128 78.1
PGSC0003DMG400029370 Solanum tuberosum HOM05D006706 ORTHO05D008794 9.5e-54 214.2 118 84.7
Glyma.06G077100 Glycine max HOM05D006706 ORTHO05D008794 1.6e-53 213.4 121 83.5
Nitab4.5_0001159g0140 Nicotiana tabacum HOM05D006706 ORTHO05D008794 1.6e-53 213.4 122 82.0
BcaB01g06271 Brassica carinata HOM05D006706 ORTHO05D008794 2.1e-53 213.0 128 78.1
Hund07113 Selenicereus undatus HOM05D006706 ORTHO05D008794 2.1e-53 213.0 128 77.3
Medtr3g108900 Medicago truncatula HOM05D006706 ORTHO05D008794 2.8e-53 212.6 128 78.9
Psat0s1809g0040 Pisum sativum HOM05D006706 ORTHO05D008794 3.6e-53 212.2 124 81.5
BcaB01g05507 Brassica carinata HOM05D006706 ORTHO05D008794 4.7e-53 211.8 128 76.6
C03p05410 Brassica napus HOM05D006706 ORTHO05D008794 4.7e-53 211.8 128 76.6
Carub.0006s0917 Capsella rubella HOM05D006706 ORTHO05D008794 4.7e-53 211.8 125 79.2
MELO3C011186.2 Cucumis melo HOM05D006706 ORTHO05D008794 4.7e-53 211.8 136 77.2
Phvul.009G101700 Phaseolus vulgaris HOM05D006706 ORTHO05D008794 4.7e-53 211.8 125 80.0
Oeu018568.1 Olea europaea HOM05D006706 ORTHO05D008794 6.2e-53 211.5 124 79.8
BcaC04g19291 Brassica carinata HOM05D006706 ORTHO05D008794 8.1e-53 211.1 125 79.2
CARHR202620 Cardamine hirsuta HOM05D006706 ORTHO05D008794 8.1e-53 211.1 127 77.2
ATR0580G320 Amborella trichopoda HOM05D006706 ORTHO05D008794 1.1e-52 210.7 124 79.8
Sed0007748 Sechium edule HOM05D006706 ORTHO05D008794 1.8e-52 209.9 121 83.5
Migut.A00436 Erythranthe guttata HOM05D006706 ORTHO05D008794 3.1e-52 209.1 116 81.9
PGR044G2738 Punica granatum HOM05D006706 ORTHO05D008794 3.1e-52 209.1 118 82.2
Aa31LG3G16430 Aethionema arabicum HOM05D006706 ORTHO05D008794 4.0e-52 208.8 125 77.6
Aqoxy7G02908 Aquilegia oxysepala HOM05D006706 ORTHO05D008794 5.2e-52 208.4 128 77.3
MSTRG.25780 Avicennia marina HOM05D006706 ORTHO05D008794 3.4e-51 205.7 124 77.4
MBI14_g10732_MAGBIO Magnolia biondii HOM05D006706 ORTHO05D008794 7.6e-51 204.5 127 78.7
SEGI_18071 Sequoiadendron giganteum HOM05D006706 ORTHO05D008794 5.4e-49 198.4 125 70.4
Zm00001eb071580 Zea mays HOM05D006706 ORTHO05D008794 3.5e-48 195.7 118 74.6
Os04g0605200 Oryza sativa ssp. japonica HOM05D006706 ORTHO05D008794 1.3e-47 193.7 119 72.3
AUR62037716 Chenopodium quinoa HOM05D006706 ORTHO05D008794 1.7e-47 193.4 105 84.8
HPP92_021967 Vanilla planifolia HOM05D006706 ORTHO05D008794 1.9e-46 189.9 118 76.3
Pp3c18_3890 Physcomitrium patens HOM05D006706 ORTHO05D008794 4.3e-46 188.7 122 68.9
HPP92_021941 Vanilla planifolia HOM05D006706 ORTHO05D008794 7.3e-46 188.0 118 75.4
SMO203G0167 Selaginella moellendorffii HOM05D006706 ORTHO05D008794 4.7e-45 185.3 121 69.4
AagrBONN_evm.TU.Sc2ySwM_228.645 Anthoceros agrestis HOM05D000036 ORTHO05D038461 2.4e-44 183.0 120 69.2
ClCG08G012660 Citrullus lanatus HOM05D006706 ORTHO05D008794 4.4e-43 178.7 134 67.2
SGA_v2.0_scaffold193G40663 Striga asiatica HOM05D006706 ORTHO05D008794 9.9e-43 177.6 143 62.9
MD15G1107200 Malus domestica HOM05D006706 ORTHO05D008794 2.9e-42 176.0 133 70.7
Mapoly0013s0161 Marchantia polymorpha HOM05D006706 ORTHO05D008794 1.1e-41 174.1 121 64.5
Ah.10g024780 Amaranthus hybridus HOM05D006706 ORTHO05D008794 2.1e-40 169.9 99 78.8
CBR_g3167 Chara braunii HOM05D006706 ORTHO05D008794 4.8e-37 158.7 126 59.5
Cre10.g449350 Chlamydomonas reinhardtii HOM05D006706 ORTHO05D008794 1.4e-36 157.1 120 59.2
unitig_21.g20325 Utricularia gibba HOM05D006706 ORTHO05D008794 4.0e-36 155.6 138 53.6
MCO07G367 Micromonas commoda HOM05D006706 ORTHO05D008794 4.4e-35 152.1 116 59.5
Gohir.D06G107400 Gossypium hirsutum HOM05D006706 ORTHO05D008794 5.4e-25 118.6 59 89.8
Gohir.A06G105300 Gossypium hirsutum HOM05D006706 ORTHO05D008794 1.6e-24 117.1 59 88.1
TAR636G3689 Trochodendron aralioides HOM05D006706 ORTHO05D008794 3.0e-23 112.8 59 86.4
EL10Ac2g02413 Beta vulgaris HOM05D006706 ORTHO05D008794 6.7e-23 111.7 69 75.4
Sc06g0000170 Simmondsia chinensis HOM05D006706 ORTHO05D008794 8.7e-23 111.3 58 82.8
PRCOL_00004161 Prasinoderma coloniale HOM05D006706 ORTHO05D008794 1.8e-20 103.6 120 49.2
Haze_27087 Corylus avellana HOM05D006706 ORTHO05D008794 4.0e-20 102.4 116 46.6
CDE06G2578 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 6.5e-18 95.1 62 69.4
A10p26910 Brassica napus HOM05D006706 ORTHO05D028018 7.6e-11 71.6 44 75.0
Sed0005624 Sechium edule HOM05D006706 ORTHO05D373521 3.9e-07 59.3 60 50.0


User provided reference genes

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