Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.6e-68 262.7 135 100.0
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.2e-23 113.6 133 54.9
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.5e-23 113.2 133 54.1
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.4e-21 106.7 133 57.9
Atru.chr7.2644 Acer truncatum HOM05D001798 ORTHO05D005040 1.9e-18 96.3 152 45.4
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.9e-18 96.3 136 52.9
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 2.5e-18 95.9 118 55.1
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 5.6e-18 94.7 132 52.3
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.6e-18 94.0 138 51.4
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.2e-17 91.3 122 54.9
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 5.3e-16 88.2 133 45.1
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.2e-15 87.0 85 61.2
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.5e-15 86.7 120 52.5
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.6e-15 85.9 141 48.2
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 3.4e-15 85.5 128 48.4
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.5e-15 85.1 137 49.6
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.5e-15 85.1 137 49.6
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 7.6e-15 84.3 136 39.7
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.7e-14 83.2 127 48.0
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.9e-14 82.4 120 53.3
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 4.9e-14 81.6 133 43.6
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.9e-14 81.6 133 43.6
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 6.4e-14 81.3 128 46.1
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 8.4e-14 80.9 141 46.1
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 8.4e-14 80.9 133 39.8
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-13 80.5 128 50.0
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-13 80.5 128 48.4
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.1e-13 80.5 132 43.9
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.4e-13 80.1 133 43.6
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 2.4e-13 79.3 127 47.2
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.4e-13 79.3 136 46.3
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.4e-13 79.3 116 47.4
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.4e-13 79.3 116 47.4
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 2.4e-13 79.3 132 43.2
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.4e-13 79.3 132 43.9
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.4e-13 79.3 133 47.4
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 3.2e-13 79.0 117 46.2
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.2e-13 79.0 133 47.4
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 4.2e-13 78.6 128 44.5
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.2e-13 78.6 118 46.6
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 4.2e-13 78.6 127 48.0
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 9.3e-13 77.4 113 50.4
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.2e-12 77.0 127 44.9
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.6e-12 76.6 122 43.4
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.6e-12 76.6 135 42.2
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.1e-12 76.3 122 44.3
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.1e-12 76.3 124 41.1
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.7e-12 75.9 129 43.4
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.7e-12 75.9 136 47.1
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 2.7e-12 75.9 135 45.9
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 4.6e-12 75.1 133 46.6
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 4.6e-12 75.1 130 46.9
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 6.0e-12 74.7 127 44.9
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 6.0e-12 74.7 130 46.9
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 6.0e-12 74.7 126 43.7
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 6.0e-12 74.7 138 42.0
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 7.9e-12 74.3 140 47.1
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.3e-11 73.6 132 45.5
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.8e-11 73.2 117 46.2
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.8e-11 73.2 125 44.0
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.8e-11 73.2 128 44.5
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.3e-11 72.8 125 44.0
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 2.3e-11 72.8 121 43.0
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.3e-11 72.8 116 44.0
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 2.3e-11 72.8 121 44.6
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.3e-11 72.8 127 41.7
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 3.0e-11 72.4 134 41.8
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 3.9e-11 72.0 130 44.6
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 3.9e-11 72.0 114 50.0
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.1e-11 71.6 132 44.7
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 8.7e-11 70.9 98 49.0
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 8.7e-11 70.9 120 43.3
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.1e-10 70.5 126 42.9
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.5e-10 70.1 128 42.2
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 1.5e-10 70.1 135 42.2
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.9e-10 69.7 134 40.3
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.9e-10 69.7 150 40.7
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.3e-10 68.9 124 42.7
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 3.3e-10 68.9 128 42.2
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 4.3e-10 68.6 137 42.3
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 4.3e-10 68.6 126 42.9
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 4.3e-10 68.6 140 37.9
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.3e-10 68.6 138 39.9
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 5.6e-10 68.2 122 41.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 5.6e-10 68.2 124 43.5
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 5.6e-10 68.2 129 41.1
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 5.6e-10 68.2 128 42.2
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 7.4e-10 67.8 128 42.2
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.4e-10 67.8 129 39.5
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.4e-10 67.8 129 39.5
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 9.6e-10 67.4 124 42.7
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 9.6e-10 67.4 135 37.0
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.6e-09 66.6 127 41.7
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.6e-09 66.6 127 41.7
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.6e-09 66.6 127 41.7
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.6e-09 66.6 96 46.9
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.6e-09 66.6 120 41.7
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.1e-09 66.2 124 42.7
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.1e-09 66.2 124 42.7
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 2.1e-09 66.2 135 37.8
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 2.1e-09 66.2 121 39.7
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.1e-09 66.2 128 40.6
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 2.1e-09 66.2 121 43.0
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.8e-09 65.9 124 42.7
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 2.8e-09 65.9 138 37.0
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 2.8e-09 65.9 126 40.5
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.7e-09 65.5 123 42.3
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.7e-09 65.5 130 41.5
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.7e-09 65.5 124 42.7
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 3.7e-09 65.5 130 42.3
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 4.8e-09 65.1 128 40.6
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 4.8e-09 65.1 127 43.3
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 4.8e-09 65.1 142 36.6
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 6.2e-09 64.7 128 40.6
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 6.2e-09 64.7 127 40.9
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 6.2e-09 64.7 127 40.9
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.2e-09 64.7 124 44.4
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.2e-09 64.7 124 44.4
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 8.2e-09 64.3 137 37.2
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.1e-08 63.9 96 45.8
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.1e-08 63.9 130 42.3
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.1e-08 63.9 129 38.8
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.4e-08 63.5 124 43.5
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.4e-08 63.5 144 38.2
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 1.4e-08 63.5 138 36.2
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.8e-08 63.2 130 38.5
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.8e-08 63.2 142 35.2
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.8e-08 63.2 133 38.3
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.4e-08 62.8 124 43.5
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.4e-08 62.8 109 45.0
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 2.4e-08 62.8 116 36.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 2.4e-08 62.8 90 50.0
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 3.1e-08 62.4 130 41.5
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 4.0e-08 62.0 134 38.8
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 4.0e-08 62.0 126 40.5
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 6.9e-08 61.2 138 36.2
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 9.0e-08 60.8 129 41.1
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.2e-07 60.5 111 40.5
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.5e-07 60.1 127 39.4
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.5e-07 60.1 118 36.4
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.0e-07 59.7 132 38.6
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.4e-07 58.9 135 38.5
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 5.8e-07 58.2 150 35.3
CsaV3_3G001020 Cucumis sativus L. HOM05D001798 ORTHO05D022392 5.8e-07 58.2 113 41.6
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 7.6e-07 57.8 128 39.8
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 7.6e-07 57.8 127 40.9
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 7.6e-07 57.8 135 40.7
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.0e-06 57.4 133 39.8
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.0e-06 57.4 135 38.5
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.2e-06 56.2 134 38.8
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 2.9e-06 55.8 115 32.2
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.9e-06 55.8 127 37.8
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 3.8e-06 55.5 135 35.6
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 4.9e-06 55.1 140 34.3
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 6.5e-06 54.7 88 43.2
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 6.5e-06 54.7 88 43.2
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 6.5e-06 54.7 130 33.1


User provided reference genes

Program Settings