Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2642 Acer truncatum HOM05D019337 ORTHO05D009846 5.5e-198 694.5 463 100.0
Ciclev10010613m.g Citrus clementina HOM05D014278 ORTHO05D009846 2.1e-27 127.9 478 36.8
Duzib168G1354 Durio zibethinus HOM05D019025 ORTHO05D009846 3.6e-16 90.5 469 30.1
Manes.16G135600 Manihot esculenta HOM05D014278 ORTHO05D009846 1.8e-15 88.2 449 28.1
MELO3C011188.2 Cucumis melo HOM05D019337 ORTHO05D009846 2.6e-14 84.3 496 30.2
ClCG08G012670 Citrullus lanatus HOM05D019337 ORTHO05D009846 1.4e-12 78.6 492 29.9
Duzib187G1602 Durio zibethinus HOM05D019025 ORTHO05D009846 2.4e-12 77.8 464 30.0
MD15G1107800 Malus domestica HOM05D013263 ORTHO05D009846 2.4e-12 77.8 478 34.9
CiPaw.07G212500 Carya illinoinensis HOM05D013263 ORTHO05D009846 4.2e-12 77.0 421 34.7
TWI32G0873 Tripterygium wilfordii HOM05D013263 ORTHO05D009846 7.1e-12 76.3 418 30.9
Potri.018G005500 Populus trichocarpa HOM05D014278 ORTHO05D009846 1.0e-10 72.4 484 33.9
Sed0003431 Sechium edule HOM05D019337 ORTHO05D009846 5.1e-10 70.1 456 30.9
TWI34G1417 Tripterygium wilfordii HOM05D014278 ORTHO05D009846 6.7e-10 69.7 435 28.3
CsaV3_2G031380 Cucumis sativus L. HOM05D019337 ORTHO05D009846 1.5e-09 68.6 489 28.4
Prupe.1G460100 Prunus persica HOM05D013263 ORTHO05D009846 3.3e-09 67.4 461 29.7
BraA02t05042Z Brassica rapa HOM05D008799 ORTHO05D010975 5.6e-09 66.6 50 78.0
Dinv21138 Davidia involucrata HOM05D003021 ORTHO05D009846 5.6e-09 66.6 48 75.0
ECA232G0555 Erigeron canadensis HOM05D003021 ORTHO05D002235 7.4e-09 66.2 61 57.4
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 7.4e-09 66.2 65 56.9
BcaB05g21498 Brassica carinata HOM05D008799 ORTHO05D010975 9.6e-09 65.9 50 76.0
A02p00590 Brassica napus HOM05D008799 ORTHO05D010975 1.6e-08 65.1 50 76.0
A03p04690 Brassica napus HOM05D008799 ORTHO05D010975 1.6e-08 65.1 50 74.0
Medtr3g108830 Medicago truncatula HOM05D013197 ORTHO05D009846 1.6e-08 65.1 44 72.7
Potri.006G274600 Populus trichocarpa HOM05D014278 ORTHO05D009846 1.6e-08 65.1 466 29.8
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 2.1e-08 64.7 63 55.6
Lj8P444T9 Lonicera japonica HOM05D009522 ORTHO05D009846 3.7e-08 63.9 43 79.1
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 6.2e-08 63.2 47 68.1
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 6.2e-08 63.2 47 68.1
Medtr4g109220 Medicago truncatula HOM05D014856 ORTHO05D002235 6.2e-08 63.2 44 70.5
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 8.1e-08 62.8 45 68.9
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 8.1e-08 62.8 45 68.9
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 8.1e-08 62.8 45 68.9
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 8.1e-08 62.8 45 68.9
Cfa013269 Carpinus fangiana HOM05D014278 ORTHO05D009846 1.1e-07 62.4 489 31.3
ECA240G3142 Erigeron canadensis HOM05D009522 ORTHO05D009846 1.1e-07 62.4 42 76.2
Glyma.05G023500 Glycine max HOM05D014856 ORTHO05D002235 1.1e-07 62.4 44 70.5
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.1e-07 62.4 45 68.9
HanXRQChr09g0264151 Helianthus annuus HOM05D003021 ORTHO05D002235 1.1e-07 62.4 59 57.6
Sed0008235 Sechium edule HOM05D019337 ORTHO05D009846 1.1e-07 62.4 464 29.1
A10p26930 Brassica napus HOM05D008799 ORTHO05D010975 1.8e-07 61.6 50 72.0
BraA10t44744Z Brassica rapa HOM05D008799 ORTHO05D010975 1.8e-07 61.6 50 72.0
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 1.8e-07 61.6 41 73.2
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 1.8e-07 61.6 41 73.2
Ciclev10011360m.g Citrus clementina HOM05D003021 ORTHO05D002235 2.4e-07 61.2 43 69.8
Glyma.17G076200 Glycine max HOM05D014856 ORTHO05D002235 2.4e-07 61.2 82 45.1
Lj8P473T2 Lonicera japonica HOM05D031498 ORTHO05D016335 2.4e-07 61.2 43 76.7
Atru.chr8.382 Acer truncatum HOM05D003021 ORTHO05D002235 3.1e-07 60.8 62 53.2
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 3.1e-07 60.8 43 69.8
CSS0042635 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 3.1e-07 60.8 43 69.8
Ca_15666_v3 Cicer arietinum L. HOM05D013197 ORTHO05D009846 3.1e-07 60.8 44 70.5
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 3.1e-07 60.8 43 69.8
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 3.1e-07 60.8 43 69.8
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 3.1e-07 60.8 44 68.2
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 3.1e-07 60.8 43 69.8
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 4.0e-07 60.5 43 69.8
Cpa.g.sc14.145 Carica papaya HOM05D003021 ORTHO05D002235 4.0e-07 60.5 41 73.2
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 4.0e-07 60.5 43 69.8
THA.LOC104819408 Tarenaya hassleriana HOM05D009040 ORTHO05D002235 4.0e-07 60.5 85 43.5
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 4.0e-07 60.5 60 53.3
Ca_12855_v3 Cicer arietinum L. HOM05D016469 ORTHO05D012811 5.3e-07 60.1 74 47.3
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 5.3e-07 60.1 43 69.8
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 5.3e-07 60.1 43 69.8
Lj7C750T8 Lonicera japonica HOM05D031498 ORTHO05D009846 5.3e-07 60.1 80 48.8
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 5.3e-07 60.1 43 69.8
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 5.3e-07 60.1 43 69.8
Sabra18G0011200 Salix brachista HOM05D014278 ORTHO05D009846 5.3e-07 60.1 471 29.9
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 5.3e-07 60.1 43 69.8
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 5.3e-07 60.1 64 51.6
ATR0564G160 Amborella trichopoda HOM05D003021 ORTHO05D002235 6.9e-07 59.7 43 72.1
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 6.9e-07 59.7 43 69.8
Ca_21794_v3 Cicer arietinum L. HOM05D014856 ORTHO05D002235 6.9e-07 59.7 80 45.0
Hma1.2p1_1813F.1_g303770 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 6.9e-07 59.7 61 50.8
Hma1.2p1_3044F.1_g332070 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 6.9e-07 59.7 61 50.8
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 6.9e-07 59.7 44 65.9
Sabra18G0013600 Salix brachista HOM05D014278 ORTHO05D009846 6.9e-07 59.7 471 29.9
TAR622G0013 Trochodendron aralioides HOM05D003021 ORTHO05D002235 6.9e-07 59.7 45 66.7
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 6.9e-07 59.7 68 52.9
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 9.0e-07 59.3 43 67.4
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 9.0e-07 59.3 43 67.4
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 9.0e-07 59.3 43 69.8
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 9.0e-07 59.3 43 67.4
Cpa.g.sc23.16 Carica papaya HOM05D013263 ORTHO05D009846 1.2e-06 58.9 440 28.9
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 1.2e-06 58.9 63 52.4
COL.COLO4_19033 Corchorus olitorius HOM05D019025 ORTHO05D009846 1.2e-06 58.9 482 30.1
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.2e-06 58.9 43 67.4
FAN27G1111 Fragaria x ananassa HOM05D013263 ORTHO05D009846 1.2e-06 58.9 464 27.8
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 1.2e-06 58.9 43 67.4
SGA_v2.0_scaffold154G37085 Striga asiatica HOM05D003021 ORTHO05D002235 1.2e-06 58.9 84 45.2
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 1.5e-06 58.5 43 67.4
FvH4_6g47500 Fragaria vesca HOM05D003021 ORTHO05D002235 1.5e-06 58.5 43 67.4
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.5e-06 58.5 43 69.8
MD08G1128300 Malus domestica HOM05D013263 ORTHO05D009846 1.5e-06 58.5 485 32.6
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 1.5e-06 58.5 42 69.0
Os03g0211400 Oryza sativa ssp. japonica HOM05D003021 ORTHO05D002235 1.5e-06 58.5 45 66.7
TPR.G1990 Trifolium pratense HOM05D014856 ORTHO05D002235 1.5e-06 58.5 45 68.9
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 2.0e-06 58.2 62 50.0
FAN09G3860 Fragaria x ananassa HOM05D003021 ORTHO05D002235 2.0e-06 58.2 43 67.4
FAN14G5480 Fragaria x ananassa HOM05D003021 ORTHO05D002235 2.0e-06 58.2 43 67.4
Lj1g0027444 Lotus japonicus HOM05D013197 ORTHO05D009846 2.0e-06 58.2 503 29.4
Ah.10g031940 Amaranthus hybridus HOM05D003021 ORTHO05D002235 2.6e-06 57.8 41 70.7
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 2.6e-06 57.8 43 67.4
CARHR188570 Cardamine hirsuta HOM05D008799 ORTHO05D010975 2.6e-06 57.8 458 31.4
ClCG04G012000 Citrullus lanatus HOM05D003021 ORTHO05D002235 2.6e-06 57.8 43 67.4
Nitab4.5_0003145g0060 Nicotiana tabacum HOM05D003021 ORTHO05D002235 2.6e-06 57.8 43 67.4
Peaxi162Scf00045g01739 Petunia axillaris HOM05D017514 ORTHO05D009846 2.6e-06 57.8 43 67.4
Peaxi162Scf00274g00005 Petunia axillaris HOM05D003021 ORTHO05D022173 2.6e-06 57.8 45 60.0
Migut.K01293 Erythranthe guttata HOM05D003021 ORTHO05D002235 3.4e-06 57.4 43 67.4
FAN08G3689 Fragaria x ananassa HOM05D003021 ORTHO05D002235 3.4e-06 57.4 43 67.4
Lj9P468T32 Lonicera japonica HOM05D003021 ORTHO05D002235 3.4e-06 57.4 47 61.7
Nitab4.5_0001211g0040 Nicotiana tabacum HOM05D003021 ORTHO05D022173 3.4e-06 57.4 90 43.3
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 3.4e-06 57.4 43 67.4
RcHm_v2.0_Chr7g0182331 Rosa chinensis HOM05D003021 ORTHO05D002235 3.4e-06 57.4 43 67.4
THA.LOC104805496 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 3.4e-06 57.4 41 70.7
MSTRG.23902 Avicennia marina HOM05D003021 ORTHO05D002235 4.5e-06 57.0 43 65.1
CANSAT80G0381 Cannabis sativa HOM05D003021 ORTHO05D002235 4.5e-06 57.0 42 69.0
CAN.G479.38 Capsicum annuum HOM05D003021 ORTHO05D022173 4.5e-06 57.0 88 38.6
Migut.E01423 Erythranthe guttata HOM05D009522 ORTHO05D009846 4.5e-06 57.0 40 75.0
Oeu016158.1 Olea europaea HOM05D003021 ORTHO05D002235 4.5e-06 57.0 51 60.8
Phvul.003G186900 Phaseolus vulgaris HOM05D014856 ORTHO05D002235 4.5e-06 57.0 42 69.0
Phvul.004G033600 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 4.5e-06 57.0 43 67.4
Zm00001eb226400 Zea mays HOM05D021493 ORTHO05D020940 4.5e-06 57.0 42 69.0
Aqoxy3G03562 Aquilegia oxysepala HOM05D003021 ORTHO05D002235 5.8e-06 56.6 42 66.7
CARHR275010 Cardamine hirsuta HOM05D009040 ORTHO05D002235 5.8e-06 56.6 43 62.8
CDE05G2252 Ceratophyllum demersum HOM05D003021 ORTHO05D002235 5.8e-06 56.6 47 63.8
CsaV3_1G005770 Cucumis sativus L. HOM05D003021 ORTHO05D002235 5.8e-06 56.6 43 67.4
Nitab4.5_0002881g0010 Nicotiana tabacum HOM05D003021 ORTHO05D022173 5.8e-06 56.6 90 43.3
Psat6g146680 Pisum sativum HOM05D003021 ORTHO05D002235 5.8e-06 56.6 41 68.3
QL10p018571 Quercus lobata HOM05D003021 ORTHO05D002235 5.8e-06 56.6 41 68.3
SGA_v2.0_scaffold52G19187 Striga asiatica HOM05D003021 ORTHO05D002235 5.8e-06 56.6 56 55.4
THA.LOC104801387 Tarenaya hassleriana HOM05D009040 ORTHO05D002235 5.8e-06 56.6 41 70.7
CSS0009655 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 7.6e-06 56.2 81 43.2
CDE05G3476 Ceratophyllum demersum HOM05D003021 ORTHO05D002235 7.6e-06 56.2 45 68.9
Migut.H00652 Erythranthe guttata HOM05D003021 ORTHO05D002235 7.6e-06 56.2 43 65.1
Lalb_Chr13g0303001 Lupinus albus HOM05D014856 ORTHO05D002235 7.6e-06 56.2 42 69.0
Sed0026957 Sechium edule HOM05D003021 ORTHO05D002235 7.6e-06 56.2 43 65.1
Sopen03g034540 Solanum pennellii HOM05D003021 ORTHO05D022173 7.6e-06 56.2 84 40.5
Dinv38770 Davidia involucrata HOM05D003021 ORTHO05D002235 9.9e-06 55.8 43 62.8
Lj1g0014126 Lotus japonicus HOM05D003021 ORTHO05D002235 9.9e-06 55.8 43 65.1
MBI16_g15533_MAGBIO Magnolia biondii HOM05D003021 ORTHO05D002235 9.9e-06 55.8 60 56.7
Peaxi162Scf00013g00052 Petunia axillaris HOM05D003021 ORTHO05D002235 9.9e-06 55.8 44 61.4
Sed0010326 Sechium edule HOM05D003021 ORTHO05D002235 9.9e-06 55.8 40 72.5


User provided reference genes

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