Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 3.0e-249 864.8 452 100.0
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 8.0e-117 424.9 462 54.1
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 5.5e-102 375.6 461 50.3
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 5.4e-89 332.4 444 48.9
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 2.7e-88 330.1 476 46.6
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.6e-85 320.9 550 40.2
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 8.0e-85 318.5 451 47.7
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 9.8e-83 311.6 470 45.3
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.6e-80 302.8 439 45.1
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 1.7e-79 300.8 481 42.4
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.2e-77 294.7 441 44.7
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 1.6e-77 294.3 469 43.3
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.5e-75 287.7 443 44.0
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 3.5e-72 276.6 447 43.6
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 5.1e-71 272.7 433 44.6
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 1.2e-69 268.1 373 48.3
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 1.1e-68 265.0 310 51.6
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.8e-68 264.2 446 43.5
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.8e-68 264.2 446 43.5
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 3.1e-68 263.5 467 41.1
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 4.9e-66 256.1 501 39.7
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.4e-65 254.6 460 41.5
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 2.3e-63 247.3 504 38.1
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 2.3e-63 247.3 426 41.1
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 1.5e-62 244.6 443 42.0
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 2.5e-62 243.8 430 40.2
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 1.8e-60 237.7 439 39.4
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 3.1e-60 236.9 461 39.0
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 4.4e-59 233.0 462 39.4
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 3.8e-58 229.9 459 40.3
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 6.4e-58 229.2 454 38.8
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.1e-57 228.4 428 39.7
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.4e-57 228.0 456 41.2
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 2.4e-57 227.3 456 41.2
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.6e-56 224.6 455 40.4
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 2.1e-56 224.2 449 38.3
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 2.1e-56 224.2 458 39.5
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 3.0e-55 220.3 465 38.7
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 3.9e-55 219.9 467 37.5
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 5.1e-55 219.5 467 38.5
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 1.9e-54 217.6 461 37.1
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 2.5e-54 217.2 385 39.2
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 3.6e-53 213.4 438 38.8
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.4e-49 201.4 476 34.5
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.9e-49 201.1 454 35.0
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 2.4e-49 200.7 442 38.5
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 1.2e-48 198.4 457 37.6
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 1.6e-48 198.0 460 37.2
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 3.5e-48 196.8 433 37.4
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 3.9e-47 193.4 476 33.8
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 1.8e-44 184.5 431 36.0
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 2.4e-44 184.1 459 36.2
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 7.6e-43 179.1 469 33.9
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 1.4e-41 174.9 450 34.7
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 3.2e-41 173.7 448 33.9
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 6.0e-40 169.5 228 45.2
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 7.9e-40 169.1 419 36.3
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 1.3e-39 168.3 431 37.1
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 9.6e-38 162.2 430 32.1
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 1.2e-35 155.2 454 32.8
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.0e-34 152.1 241 42.3
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 1.4e-33 148.3 434 33.6
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 3.2e-33 147.1 421 31.4
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 2.3e-31 141.0 454 32.4
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 3.3e-30 137.1 393 32.1
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 5.7e-30 136.3 270 37.8
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.6e-29 134.8 455 31.9
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 2.1e-29 134.4 243 39.9
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 3.7e-29 133.7 121 56.2
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 6.2e-29 132.9 446 33.9
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 1.8e-28 131.3 341 34.6
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 4.0e-28 130.2 429 30.8
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 5.3e-28 129.8 365 34.2
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 4.5e-27 126.7 368 32.3
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.3e-26 125.2 429 30.8
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.9e-26 124.0 167 45.5
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 8.4e-26 122.5 158 45.6
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 1.1e-25 122.1 145 46.2
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.5e-25 120.9 158 46.8
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 4.2e-25 120.2 343 35.0
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 1.2e-24 118.6 281 35.2
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 1.6e-24 118.2 369 33.1
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 1.6e-24 118.2 438 29.9
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 2.7e-24 117.5 181 39.2
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.3e-23 115.2 163 44.8
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 1.8e-23 114.8 383 31.3
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 2.3e-23 114.4 427 32.8
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 3.9e-23 113.6 325 32.9
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 3.9e-23 113.6 325 32.9
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 3.9e-23 113.6 419 30.1
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 3.9e-23 113.6 320 30.0
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 6.7e-23 112.8 451 31.7
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 8.7e-23 112.5 430 30.0
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 8.7e-23 112.5 430 30.0
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 3.3e-22 110.5 429 30.8
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 3.3e-22 110.5 435 31.3
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 3.3e-22 110.5 424 28.8
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 3.3e-22 110.5 383 30.8
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 7.4e-22 109.4 209 37.8
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 1.3e-21 108.6 407 29.0
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 1.6e-21 108.2 432 30.1
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.8e-21 107.5 437 28.1
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 8.2e-21 105.9 431 30.4
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 1.1e-20 105.5 439 29.2
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 6.9e-20 102.8 146 43.8
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 2.0e-19 101.3 444 29.3
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.6e-19 100.9 427 27.6
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 3.4e-19 100.5 426 30.3
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.3e-18 98.6 132 49.2
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 6.5e-18 96.3 376 29.8
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 8.5e-18 95.9 101 52.5
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 4.2e-17 93.6 355 29.3
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 3.9e-15 87.0 321 29.6
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 5.7e-14 83.2 64 64.1
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 2.2e-13 81.3 125 41.6
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 3.7e-13 80.5 126 42.1
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 4.8e-13 80.1 119 45.4
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 1.5e-11 75.1 384 26.8
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 2.6e-11 74.3 98 49.0
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.0e-10 72.4 439 26.0
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 1.3e-10 72.0 294 28.9
Cpa.g.sc23.6 Carica papaya HOM05D005642 ORTHO05D006672 4.2e-09 67.0 159 37.1
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 1.6e-08 65.1 321 28.7
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 3.6e-08 63.9 474 25.5
Rhsim09G0062600 Rhododendron simsii HOM05D005642 ORTHO05D006672 9.7e-06 55.8 124 36.3


User provided reference genes

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