Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 2154.0 1098 100.0
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1877.1 1094 87.5
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1821.2 1102 84.5
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1813.5 1102 83.9
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1808.1 1099 84.1
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1807.7 1097 82.9
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1805.8 1102 83.3
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1800.4 1102 83.1
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1789.2 1099 83.1
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1785.0 1101 83.1
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1766.1 1193 76.9
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1759.6 1102 81.7
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1758.0 1102 81.7
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1757.3 1101 80.7
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1749.9 1103 80.5
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1749.9 1101 80.8
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1749.2 1094 80.6
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1743.4 1095 80.3
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1743.0 1117 79.3
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1741.9 1117 79.8
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1739.2 1103 81.3
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1739.2 1101 80.8
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1733.8 1104 80.4
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1732.6 1097 79.9
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1729.9 1094 80.3
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1727.2 1117 79.1
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1719.1 1103 79.5
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1709.5 1094 79.3
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1709.1 1101 78.8
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1698.3 1094 79.8
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1696.8 1097 79.2
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1696.8 1101 78.6
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1695.6 1102 77.1
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1695.2 1102 78.8
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1694.9 1101 79.0
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1694.5 1100 78.9
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1694.1 1100 78.9
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1694.1 1098 79.2
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1692.9 1102 78.2
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1679.5 1097 78.0
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1679.1 1097 78.0
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1679.1 1097 78.1
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1679.1 1103 77.9
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1678.3 1097 78.0
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1676.4 1097 77.9
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1676.0 1097 77.8
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1675.2 1097 77.8
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1675.2 1183 74.6
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1670.2 1097 77.5
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1670.2 1097 77.8
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1667.5 1115 77.2
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1667.1 1097 77.6
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1664.0 1097 77.1
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1663.7 1103 78.0
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1662.9 1100 77.0
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1661.0 1187 74.1
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1661.0 1187 74.1
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1656.0 1100 76.9
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1654.8 1101 76.3
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1653.6 1100 76.7
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1651.7 1097 76.7
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1647.5 1102 76.8
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1647.1 1097 76.6
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1646.7 1099 76.6
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1644.8 1097 75.8
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1644.8 1097 77.0
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1642.9 1103 76.4
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1641.7 1109 75.5
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1640.6 1097 77.3
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1639.4 1102 76.5
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1621.3 1097 75.5
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1621.3 1096 76.6
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1617.8 1013 81.5
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1617.4 1097 75.8
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1617.1 1130 74.9
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1612.8 1095 75.5
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1611.3 1095 75.3
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1604.0 1101 75.7
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1598.9 1096 74.9
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1592.8 1244 69.7
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1580.5 1112 73.1
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1561.6 1102 73.5
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1552.0 1123 72.7
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1536.9 1095 73.7
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1536.5 1097 73.3
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1532.3 1023 77.3
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1483.0 1109 68.7
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1478.8 1097 70.3
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1456.0 944 78.7
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1453.3 944 78.7
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1449.9 930 79.4
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1423.3 1100 67.1
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1423.3 1097 66.2
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1401.7 1106 65.6
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1381.3 818 84.8
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1375.1 880 79.8
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1346.6 879 78.7
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1322.4 891 76.3
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1261.1 964 68.2
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1256.1 797 81.2
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1225.7 866 71.7
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1208.0 827 75.1
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1194.5 1116 57.0
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1165.2 904 67.0
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1107.0 1125 53.2
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 3.1e-292 1008.8 1119 50.4
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 8.3e-285 984.2 1118 49.6
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 4.3e-257 892.1 1158 45.3
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 6.6e-250 868.2 1099 44.5
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.7e-245 853.6 518 83.6
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.8e-230 802.0 1133 42.9
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.8e-218 763.8 1110 42.8
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 3.0e-194 683.3 424 81.6
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 1.0e-154 552.0 306 88.9
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 5.2e-154 549.7 487 62.6
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 8.9e-146 522.3 324 79.3
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 2.4e-127 461.1 323 70.0
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 3.3e-116 424.1 327 67.9
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 7.3e-116 422.9 292 74.7
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.1e-115 421.4 651 42.7
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 4.8e-115 420.2 329 69.0
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 6.0e-102 376.7 379 53.3
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 2.4e-90 338.2 249 72.3
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.2e-87 327.8 256 68.0
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.2e-86 325.9 295 54.6
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 4.4e-60 237.7 255 52.2
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 7.5e-60 236.9 208 61.1
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 3.2e-55 221.5 116 87.1
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 3.1e-50 204.9 288 46.5
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.5e-47 195.3 137 68.6
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 7.2e-47 193.7 140 72.1
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.2e-36 159.8 291 37.5
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 1.5e-36 159.5 726 24.8
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 4.9e-35 154.5 179 54.7
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.0e-32 146.7 175 51.4
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 6.6e-32 144.1 86 84.9
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 1.4e-18 99.8 62 79.0
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 1.2e-14 86.7 59 74.6
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.8e-14 85.5 231 29.9
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 2.0e-12 79.3 57 70.2
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 1.3e-11 76.6 45 73.3
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.7e-11 76.3 38 89.5
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 2.2e-11 75.9 70 60.0
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 6.4e-11 74.3 43 67.4
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 5.4e-10 71.2 55 61.8
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 6.0e-09 67.8 74 62.2
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 6.0e-09 67.8 74 62.2
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 1.7e-08 66.2 60 66.7
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.5e-07 63.2 62 56.5
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.5e-07 63.2 62 58.1
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 5.6e-07 61.2 54 68.5
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.8e-06 58.2 141 32.6


User provided reference genes

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