Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 2.1e-79 298.9 144 100.0
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.9e-20 102.4 149 49.0
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 8.4e-20 100.9 149 44.3
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 1.4e-19 100.1 149 44.3
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 4.6e-18 95.1 150 43.3
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 8.7e-17 90.9 149 40.9
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 3.3e-16 89.0 146 44.5
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 1.6e-15 86.7 134 47.0
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 4.8e-15 85.1 146 43.8
Potri.003G070750 Populus trichocarpa HOM05D008824 ORTHO05D003125 8.1e-15 84.3 146 42.5
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.1e-14 84.0 141 46.8
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.4e-14 83.6 112 48.2
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 3.1e-14 82.4 147 39.5
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 3.1e-14 82.4 134 44.0
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.1e-14 82.4 141 45.4
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 4.0e-14 82.0 148 40.5
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 4.0e-14 82.0 129 46.5
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 9.0e-14 80.9 153 39.9
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 1.5e-13 80.1 127 40.9
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 5.8e-13 78.2 143 41.3
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.8e-13 78.2 117 47.0
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 9.9e-13 77.4 129 42.6
TWI34G0986 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.3e-12 77.0 115 47.0
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.7e-12 76.6 137 41.6
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.7e-12 76.6 137 41.6
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.7e-12 76.6 137 43.8
AT5G11070 Arabidopsis thaliana HOM05D008824 ORTHO05D003125 2.2e-12 76.3 143 40.6
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 4.9e-12 75.1 113 46.9
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 6.4e-12 74.7 140 40.0
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 8.4e-12 74.3 162 36.4
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 8.4e-12 74.3 156 37.8
TWI34G1900 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.1e-11 73.9 120 46.7
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.4e-11 73.6 155 36.8
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.4e-11 72.8 170 38.8
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 3.2e-11 72.4 145 39.3
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 5.4e-11 71.6 145 36.6
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 7.1e-11 71.2 151 39.7
Aa31LG3G16070 Aethionema arabicum HOM05D008824 ORTHO05D003125 9.3e-11 70.9 155 37.4
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.2e-10 70.5 114 44.7
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 1.2e-10 70.5 156 36.5
A03p04850 Brassica napus HOM05D008824 ORTHO05D003125 2.1e-10 69.7 144 34.7
BraA03t09824Z Brassica rapa HOM05D008824 ORTHO05D003125 2.1e-10 69.7 144 34.7
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 2.1e-10 69.7 75 54.7
BcaNung01909 Brassica carinata HOM05D008824 ORTHO05D003125 2.7e-10 69.3 151 37.7
BcaNung01911 Brassica carinata HOM05D008824 ORTHO05D003125 2.7e-10 69.3 151 37.7
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 2.7e-10 69.3 130 39.2
C03p05580 Brassica napus HOM05D008824 ORTHO05D003125 3.5e-10 68.9 143 38.5
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 3.5e-10 68.9 159 36.5
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 3.5e-10 68.9 107 43.0
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.5e-10 68.9 152 41.4
BcaB01g05491 Brassica carinata HOM05D008824 ORTHO05D003125 6.0e-10 68.2 148 37.8
BolC3t13066H Brassica oleracea HOM05D008824 ORTHO05D003125 6.0e-10 68.2 148 37.8
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.0e-10 68.2 133 38.3
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.0e-10 68.2 149 40.3
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.0e-10 68.2 149 40.3
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.0e-09 67.4 134 38.8
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 1.8e-09 66.6 148 35.8
BraA02t05065Z Brassica rapa HOM05D008824 ORTHO05D003125 2.3e-09 66.2 143 37.8
CARHR202220 Cardamine hirsuta HOM05D008824 ORTHO05D003125 2.3e-09 66.2 157 35.0
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.3e-09 66.2 135 36.3
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 3.0e-09 65.9 122 41.0
BcaNung07098 Brassica carinata HOM05D008824 ORTHO05D003125 3.0e-09 65.9 148 35.1
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 3.0e-09 65.9 146 36.3
BraA10t44721Z Brassica rapa HOM05D008824 ORTHO05D003125 3.9e-09 65.5 146 38.4
FvH4_2g28320 Fragaria vesca HOM05D019695 ORTHO05D022679 3.9e-09 65.5 147 36.1
FAN24G2106 Fragaria x ananassa HOM05D019695 ORTHO05D022679 3.9e-09 65.5 147 36.1
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 5.1e-09 65.1 138 36.2
BcaC04g19263 Brassica carinata HOM05D008824 ORTHO05D003125 5.1e-09 65.1 147 37.4
A10p26630 Brassica napus HOM05D008824 ORTHO05D003125 5.1e-09 65.1 147 38.1
C09p65790 Brassica napus HOM05D008824 ORTHO05D003125 5.1e-09 65.1 147 38.1
BolC9t59401H Brassica oleracea HOM05D008824 ORTHO05D003125 5.1e-09 65.1 147 37.4
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 5.1e-09 65.1 133 33.8
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 5.1e-09 65.1 135 35.6
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 5.1e-09 65.1 125 39.2
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 5.1e-09 65.1 126 37.3
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 6.7e-09 64.7 168 32.7
FAN20G0523 Fragaria x ananassa HOM05D019695 ORTHO05D022679 6.7e-09 64.7 147 36.1
Sp6g32430 Schrenkiella parvula HOM05D008824 ORTHO05D003125 6.7e-09 64.7 153 35.9
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 6.7e-09 64.7 116 38.8
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 8.7e-09 64.3 116 43.1
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 8.7e-09 64.3 133 33.8
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 8.7e-09 64.3 126 43.7
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 1.1e-08 63.9 119 40.3
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 1.1e-08 63.9 125 40.0
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 1.1e-08 63.9 144 36.1
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.5e-08 63.5 133 36.1
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 1.5e-08 63.5 129 39.5
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 1.5e-08 63.5 130 40.0
BcaB01g06316 Brassica carinata HOM05D008824 ORTHO05D003125 1.9e-08 63.2 148 35.1
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 1.9e-08 63.2 121 42.1
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 2.5e-08 62.8 129 36.4
Carub.0006s0958 Capsella rubella HOM05D008824 ORTHO05D003125 3.3e-08 62.4 156 35.9
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 4.3e-08 62.0 116 37.9
FAN27G0582 Fragaria x ananassa HOM05D019695 ORTHO05D022679 4.3e-08 62.0 147 35.4
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 4.3e-08 62.0 170 34.1
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 5.6e-08 61.6 123 39.8
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 5.6e-08 61.6 149 36.2
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 5.6e-08 61.6 66 54.5
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 5.6e-08 61.6 168 32.1
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 5.6e-08 61.6 113 38.1
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 5.6e-08 61.6 137 37.2
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 7.4e-08 61.2 69 52.2
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 7.4e-08 61.2 117 44.4
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 7.4e-08 61.2 118 36.4
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 7.4e-08 61.2 141 39.0
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 9.6e-08 60.8 64 57.8
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 9.6e-08 60.8 79 49.4
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.6e-08 60.8 97 45.4
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 9.6e-08 60.8 141 34.8
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 9.6e-08 60.8 141 34.8
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.6e-07 60.1 68 50.0
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.6e-07 60.1 57 56.1
Aqoxy7G03536 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 1.6e-07 60.1 135 35.6
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.6e-07 60.1 152 32.9
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 1.6e-07 60.1 138 40.6
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.6e-07 60.1 147 38.1
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 2.1e-07 59.7 85 49.4
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.1e-07 59.7 168 31.5
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 2.1e-07 59.7 138 35.5
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 2.1e-07 59.7 149 37.6
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 2.1e-07 59.7 139 36.0
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 2.1e-07 59.7 71 50.7
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 2.8e-07 59.3 105 41.0
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.8e-07 59.3 118 36.4
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 3.7e-07 58.9 127 37.0
FAN15G0756 Fragaria x ananassa HOM05D019695 ORTHO05D022679 3.7e-07 58.9 117 35.9
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 3.7e-07 58.9 129 35.7
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 3.7e-07 58.9 72 48.6
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 3.7e-07 58.9 72 48.6
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.7e-07 58.9 128 39.8
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 3.7e-07 58.9 126 38.1
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.8e-07 58.5 136 37.5
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 4.8e-07 58.5 63 54.0
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.2e-07 58.2 82 48.8
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.2e-07 58.2 105 41.9
Lalb_Chr24g0402081 Lupinus albus HOM05D013068 ORTHO05D003125 6.2e-07 58.2 131 38.2
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 8.1e-07 57.8 115 38.3
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 8.1e-07 57.8 118 39.0
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 8.1e-07 57.8 128 36.7
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 8.1e-07 57.8 111 34.2
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 8.1e-07 57.8 64 56.2
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 1.1e-06 57.4 78 48.7
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.1e-06 57.4 105 35.2
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.1e-06 57.4 133 39.8
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 1.4e-06 57.0 150 33.3
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.4e-06 57.0 97 39.2
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.4e-06 57.0 82 46.3
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 1.4e-06 57.0 137 37.2
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.8e-06 56.6 68 52.9
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.8e-06 56.6 147 36.1
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 1.8e-06 56.6 137 35.0
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 1.8e-06 56.6 171 32.2
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 2.4e-06 56.2 129 36.4
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.4e-06 56.2 123 37.4
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 2.4e-06 56.2 136 36.8
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 3.1e-06 55.8 126 38.1
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 5.3e-06 55.1 83 41.0
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 5.3e-06 55.1 142 33.8
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.3e-06 55.1 68 51.5
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 5.3e-06 55.1 88 36.4
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 6.9e-06 54.7 121 36.4
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 6.9e-06 54.7 102 41.2
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.9e-06 54.7 82 47.6
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 6.9e-06 54.7 105 36.2
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 9.0e-06 54.3 146 35.6
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.0e-06 54.3 84 46.4
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 9.0e-06 54.3 143 39.9


User provided reference genes

Program Settings