Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 0.0e+00 1234.6 647 100.0
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 2.4e-268 928.7 628 77.2
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 6.6e-258 894.0 631 73.1
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 1.1e-252 876.7 629 72.7
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.3e-250 869.0 631 72.4
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 3.9e-250 868.2 630 72.2
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 5.6e-249 864.4 636 72.0
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 1.2e-246 856.7 626 71.4
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.9e-244 849.4 627 70.0
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 2.4e-244 849.0 630 69.7
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 3.5e-243 845.1 629 70.3
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 5.6e-241 837.8 630 68.9
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.4e-239 833.2 631 68.6
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 9.0e-239 830.5 627 69.2
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 2.4e-236 822.4 659 67.5
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.5e-235 818.5 628 66.6
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 2.3e-234 815.8 633 69.0
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 6.7e-234 814.3 628 66.4
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 3.3e-233 812.0 631 67.7
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 4.3e-233 811.6 628 66.1
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.6e-232 809.7 629 66.3
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.5e-230 801.6 625 65.9
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 1.0e-229 800.4 631 65.8
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 1.8e-226 789.6 628 65.9
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 4.3e-225 785.0 629 64.5
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 4.3e-225 785.0 631 65.1
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.3e-224 783.5 628 65.4
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.7e-221 773.1 590 69.5
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 8.5e-221 770.8 571 70.6
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 7.2e-220 767.7 634 63.6
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 3.6e-219 765.4 623 65.8
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.4e-218 763.5 623 65.3
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 5.1e-218 761.5 625 62.7
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 2.5e-217 759.2 623 64.5
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 9.7e-217 757.3 639 62.8
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.7e-216 756.5 626 64.7
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.7e-216 756.5 626 64.7
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 3.7e-216 755.4 617 63.9
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 8.2e-216 754.2 626 64.7
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.4e-215 753.4 624 63.8
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 4.1e-215 751.9 624 63.8
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 5.3e-215 751.5 622 64.0
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.6e-214 749.2 621 63.3
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 2.6e-214 749.2 627 61.7
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.5e-214 748.4 626 63.3
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 4.5e-214 748.4 628 62.9
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 5.9e-214 748.0 624 63.6
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 5.9e-214 748.0 669 61.0
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 7.7e-214 747.7 568 69.5
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.0e-213 747.3 626 63.3
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 6.5e-213 744.6 630 62.2
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 8.5e-213 744.2 629 62.8
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.1e-212 743.8 572 67.7
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 1.9e-212 743.0 627 61.7
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 4.2e-212 741.9 632 62.5
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 1.2e-211 740.3 627 62.2
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.0e-210 737.3 621 62.8
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.4e-210 736.9 627 60.8
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 2.0e-209 733.0 632 61.4
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 2.0e-209 733.0 628 61.8
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 9.7e-209 730.7 665 60.5
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 4.8e-208 728.4 623 62.9
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 1.8e-207 726.5 627 61.4
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 8.5e-205 717.6 642 60.4
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.0e-202 710.7 512 72.9
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.3e-202 709.5 512 72.7
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.6e-201 706.1 627 60.3
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 1.3e-200 703.7 538 70.1
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 1.0e-197 694.1 628 60.2
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 6.5e-197 691.4 509 69.5
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 5.5e-196 688.3 627 58.4
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 7.2e-196 688.0 572 63.8
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.2e-195 687.2 593 59.4
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.2e-195 687.2 593 59.4
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 4.7e-195 685.3 635 58.4
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 2.0e-193 679.9 628 55.7
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 4.1e-191 672.2 638 57.5
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 5.9e-190 668.3 632 58.2
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 1.2e-187 660.6 622 56.9
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.8e-186 656.8 631 55.5
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 6.8e-186 654.8 633 58.0
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.1e-183 647.5 529 63.5
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 7.0e-183 644.8 662 55.0
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 1.6e-179 633.6 510 64.1
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.8e-178 630.2 465 71.8
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 5.7e-177 625.2 626 52.6
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 2.8e-176 622.9 448 73.7
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 4.1e-175 619.0 606 57.9
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 5.0e-173 612.1 625 55.5
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 1.6e-171 607.1 544 60.5
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.5e-169 600.5 560 58.0
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 2.4e-167 593.2 469 65.0
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 4.1e-167 592.4 624 51.1
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 1.6e-163 580.5 632 51.3
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 7.5e-153 545.0 660 47.1
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 4.6e-150 535.8 628 50.5
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 4.0e-138 496.1 585 49.9
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.3e-133 480.3 390 61.8
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 2.1e-123 447.2 370 62.7
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 2.6e-121 440.3 479 49.7
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 8.5e-96 355.5 628 34.4
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 3.2e-95 353.6 381 54.6
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 4.7e-94 349.7 632 38.3
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 4.5e-89 333.2 624 32.9
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 5.3e-82 309.7 523 40.7
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 5.3e-82 309.7 523 40.7
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 8.0e-78 295.8 378 46.6
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 3.4e-76 290.4 374 50.0
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 7.5e-76 289.3 623 31.0
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.0e-72 278.9 516 34.3
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.4e-69 268.5 260 55.0
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 7.3e-55 219.5 255 48.2
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 3.6e-54 217.2 255 47.8
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 6.0e-49 199.9 198 52.5
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 2.0e-44 184.9 167 61.7
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 4.1e-42 177.2 167 59.3
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 2.1e-41 174.9 398 29.6
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 6.0e-41 173.3 130 69.2
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 1.1e-39 169.1 144 60.4
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 5.2e-37 160.2 222 45.5
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 1.2e-36 159.1 149 55.7
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 2.2e-35 154.8 169 46.2
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.2e-35 154.8 407 32.9
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 2.4e-34 151.4 164 48.2
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 7.8e-33 146.4 376 33.5
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 1.7e-32 145.2 561 29.1
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.1e-32 143.7 142 53.5
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.9e-31 141.7 140 58.6
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 5.2e-29 133.7 320 32.2
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 6.6e-24 116.7 91 62.6
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 8.7e-24 116.3 122 49.2
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.8e-21 108.6 82 67.1
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.4e-21 108.2 60 86.7
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 4.6e-17 94.0 68 69.1
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 4.6e-17 94.0 149 37.6
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 2.3e-16 91.7 91 57.1
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 8.1e-14 83.2 81 54.3
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 9.9e-12 76.3 120 37.5
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 9.9e-12 76.3 40 90.0
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 6.4e-11 73.6 69 52.2
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 3.2e-10 71.2 74 54.1
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.0e-08 66.2 75 50.7
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 2.3e-08 65.1 44 65.9
Rhsim01G0220500 Rhododendron simsii HOM05D004744 ORTHO05D005655 3.3e-07 61.2 38 81.6
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 3.3e-07 61.2 48 60.4
CsaV3_5G015120 Cucumis sativus L. HOM05D004744 ORTHO05D005655 6.2e-06 57.0 38 73.7


User provided reference genes

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