Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 5.4e-59 230.7 111 100.0
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 1.9e-56 222.2 106 100.0
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 1.3e-28 129.8 99 63.6
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 2.9e-28 128.6 96 63.5
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 2.1e-26 122.5 90 58.9
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 6.0e-26 120.9 88 61.4
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.0e-25 120.2 100 55.0
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.3e-25 119.8 90 57.8
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.3e-25 119.8 90 57.8
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 2.3e-25 119.0 90 58.9
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 6.7e-25 117.5 97 54.6
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 8.7e-25 117.1 102 48.0
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 1.5e-24 116.3 100 51.0
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.9e-24 115.9 90 56.7
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 5.6e-24 114.4 99 52.5
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 7.4e-24 114.0 102 52.9
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 7.4e-24 114.0 104 55.8
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 7.4e-24 114.0 101 51.5
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 7.4e-24 114.0 101 51.5
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 7.4e-24 114.0 102 52.0
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 9.6e-24 113.6 102 52.9
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 2.1e-23 112.5 101 51.5
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 3.7e-23 111.7 94 53.2
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 4.8e-23 111.3 101 52.5
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 4.8e-23 111.3 101 52.5
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 4.8e-23 111.3 101 53.5
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 4.8e-23 111.3 98 50.0
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 8.2e-23 110.5 95 52.6
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 8.2e-23 110.5 101 53.5
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.1e-22 110.2 90 55.6
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 1.4e-22 109.8 97 51.5
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.4e-22 109.8 101 53.5
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 1.4e-22 109.8 109 52.3
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 1.8e-22 109.4 97 51.5
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.4e-22 109.0 101 53.5
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 2.4e-22 109.0 92 55.4
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 3.1e-22 108.6 101 48.5
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.1e-22 108.6 96 50.0
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 3.1e-22 108.6 102 49.0
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 4.0e-22 108.2 101 52.5
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 4.0e-22 108.2 102 49.0
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 5.3e-22 107.8 100 49.0
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 9.0e-22 107.1 99 48.5
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 2.0e-21 105.9 93 50.5
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 2.0e-21 105.9 99 50.5
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.6e-21 105.5 96 51.0
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 4.5e-21 104.8 95 50.5
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 5.8e-21 104.4 103 50.5
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.3e-20 103.2 97 52.6
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.3e-20 103.2 83 55.4
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 1.7e-20 102.8 103 48.5
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 2.9e-20 102.1 91 49.5
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 2.9e-20 102.1 97 46.4
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 2.9e-20 102.1 103 53.4
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 2.9e-20 102.1 97 52.6
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 2.5e-19 99.0 100 52.0
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 5.5e-19 97.8 91 50.5
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 7.1e-19 97.4 92 48.9
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 2.1e-18 95.9 93 46.2
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.7e-18 95.5 91 49.5
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 4.6e-18 94.7 92 46.7
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 6.0e-18 94.4 79 53.2
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 5.1e-17 91.3 104 44.2
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 6.7e-17 90.9 93 46.2
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.1e-16 90.1 90 46.7
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 3.3e-16 88.6 66 59.1
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 7.4e-16 87.4 83 45.8
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.3e-15 86.7 95 44.2
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 1.6e-15 86.3 101 41.6
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 2.8e-15 85.5 90 48.9
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 8.2e-15 84.0 91 46.2
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 2.4e-14 82.4 82 45.1
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 2.4e-14 82.4 100 44.0
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 5.3e-14 81.3 100 43.0
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 6.9e-14 80.9 82 45.1
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 2.0e-13 79.3 88 45.5
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 2.6e-13 79.0 82 46.3
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 7.6e-13 77.4 82 42.7
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 7.6e-13 77.4 81 44.4
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 7.6e-13 77.4 98 40.8
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 7.6e-13 77.4 80 42.5
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.3e-12 76.6 82 43.9
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 1.3e-12 76.6 81 45.7
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 1.7e-12 76.3 99 40.4
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.9e-12 75.5 66 50.0
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 3.8e-12 75.1 82 46.3
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.8e-12 75.1 100 39.0
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 1.4e-11 73.2 73 42.5
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-11 72.8 68 50.0
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 2.5e-11 72.4 98 36.7
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 4.2e-11 71.6 98 36.7
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.2e-11 71.6 68 48.5
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 4.2e-11 71.6 89 40.4
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 5.5e-11 71.2 100 38.0
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.5e-11 71.2 66 48.5
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 5.5e-11 71.2 93 39.8
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 9.4e-11 70.5 91 36.3
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.1e-10 69.3 100 37.0
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 2.7e-10 68.9 100 36.0
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 2.7e-10 68.9 100 36.0
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 3.6e-10 68.6 75 45.3
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 4.6e-10 68.2 77 40.3
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 4.6e-10 68.2 96 39.6
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 6.1e-10 67.8 86 40.7
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 1.4e-09 66.6 100 37.0
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 1.8e-09 66.2 63 46.0
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 2.3e-09 65.9 77 37.7
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.9e-09 65.1 95 37.9
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 5.1e-09 64.7 77 42.9
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 6.7e-09 64.3 77 37.7
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 1.1e-08 63.5 75 37.3
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 1.9e-08 62.8 68 38.2
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 3.1e-06 55.5 54 46.3


User provided reference genes

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