Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 2.4e-102 375.6 196 100.0
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 2.0e-64 249.6 196 69.9
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 5.2e-57 224.9 200 61.5
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-55 219.5 200 59.5
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-54 216.9 200 59.0
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 1.9e-54 216.5 200 61.0
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 1.6e-53 213.4 201 60.2
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 3.5e-53 212.2 187 63.6
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 1.5e-51 206.8 195 61.5
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.9e-51 206.5 194 61.3
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 4.3e-51 205.3 187 61.5
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 5.6e-51 204.9 194 61.3
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.6e-51 204.9 194 61.3
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-50 203.8 194 60.8
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 1.8e-49 199.9 205 58.0
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 5.3e-49 198.4 206 56.8
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.9e-49 198.0 194 59.8
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 2.0e-48 196.4 200 55.0
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 3.4e-48 195.7 235 52.3
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 2.9e-47 192.6 195 60.5
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.6e-45 186.8 202 55.4
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.0e-45 184.9 200 55.0
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.7e-44 181.0 200 54.5
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.9e-43 179.9 199 54.8
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 3.3e-43 179.1 200 53.0
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.3e-43 177.9 200 53.5
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.6e-43 177.6 200 54.0
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.6e-43 177.6 200 54.0
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-42 176.4 200 53.5
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 3.6e-42 175.6 168 61.3
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.8e-42 175.3 200 53.5
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.2e-42 174.9 200 53.0
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.1e-41 174.1 200 52.5
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 6.9e-41 171.4 202 51.5
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.0e-41 171.0 196 54.1
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 4.5e-40 168.7 200 52.0
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 5.8e-40 168.3 193 51.8
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 7.6e-40 167.9 211 48.3
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 9.9e-40 167.5 202 50.5
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.1e-38 164.1 200 53.0
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 3.5e-37 159.1 203 50.7
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.0e-37 158.3 145 57.9
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 6.0e-37 158.3 201 50.7
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.3e-36 157.1 201 50.2
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 3.9e-36 155.6 199 49.7
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 9.6e-35 151.0 183 50.8
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.3e-34 150.6 205 49.8
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-34 149.8 196 50.5
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 6.2e-34 148.3 193 50.8
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 6.2e-34 148.3 191 48.7
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 8.1e-34 147.9 227 45.4
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 3.1e-33 146.0 191 47.6
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 5.3e-33 145.2 152 57.9
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 5.3e-33 145.2 203 47.3
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 6.9e-33 144.8 191 47.6
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 9.0e-33 144.4 200 47.5
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 1.2e-32 144.1 194 48.5
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.2e-32 144.1 206 48.1
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 1.5e-32 143.7 200 48.5
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 3.4e-32 142.5 192 49.0
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 9.9e-32 141.0 194 47.9
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 1.3e-31 140.6 190 46.3
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 2.5e-30 136.3 190 44.7
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 3.2e-30 136.0 157 52.9
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 4.2e-30 135.6 190 44.2
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 1.6e-29 133.7 202 48.0
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 2.7e-29 132.9 172 50.0
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 2.7e-29 132.9 193 46.6
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 3.5e-29 132.5 195 45.1
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 4.6e-29 132.1 196 46.9
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 1.0e-28 131.0 172 48.8
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.3e-28 130.6 196 46.4
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.7e-28 127.9 145 53.1
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.7e-28 127.9 145 53.1
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 1.5e-27 127.1 202 46.0
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 1.9e-27 126.7 188 46.8
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.9e-27 126.7 202 43.6
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 2.5e-27 126.3 187 47.1
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 3.3e-27 125.9 194 45.9
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 3.3e-27 125.9 197 46.2
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 3.3e-27 125.9 186 45.7
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 4.3e-27 125.6 188 45.2
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 4.3e-27 125.6 195 45.1
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 5.6e-27 125.2 188 45.2
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 3.7e-26 122.5 230 40.0
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 3.7e-26 122.5 182 46.2
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 1.4e-25 120.6 199 46.2
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 2.4e-25 119.8 192 45.8
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 3.1e-25 119.4 171 44.4
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 3.1e-25 119.4 188 44.1
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 3.1e-25 119.4 188 44.1
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 5.3e-25 118.6 193 45.6
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.0e-24 116.7 165 47.9
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 3.4e-24 115.9 196 43.9
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 4.5e-24 115.5 197 42.6
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 5.8e-24 115.2 200 43.5
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 5.8e-24 115.2 198 43.4
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 5.8e-24 115.2 198 43.4
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.5e-22 109.8 191 42.9
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 3.2e-22 109.4 185 44.3
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 3.2e-22 109.4 83 75.9
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 4.2e-22 109.0 201 39.8
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 9.3e-22 107.8 201 41.3
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.1e-21 106.7 197 44.2
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.7e-21 106.3 193 41.5
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 3.5e-21 105.9 148 45.9
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.6e-21 105.5 196 43.9
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.3e-20 104.0 181 40.9
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 3.0e-20 102.8 208 38.5
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 3.0e-20 102.8 193 39.9
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 5.1e-20 102.1 180 42.8
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 5.1e-20 102.1 152 45.4
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 8.7e-20 101.3 184 40.8
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.5e-19 100.5 189 41.3
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.9e-19 100.1 193 38.9
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.5e-19 99.8 197 40.1
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 3.3e-19 99.4 193 38.9
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 4.3e-19 99.0 145 45.5
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 5.7e-19 98.6 192 39.6
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 5.7e-19 98.6 192 39.6
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 5.7e-19 98.6 195 41.0
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 9.7e-19 97.8 204 38.7
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 1.6e-18 97.1 186 39.8
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 2.2e-18 96.7 189 40.2
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 2.8e-18 96.3 185 37.3
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 1.4e-17 94.0 188 38.8
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 3.1e-17 92.8 187 40.1
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 3.1e-17 92.8 199 38.2
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 3.1e-17 92.8 199 38.2
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 9.0e-17 91.3 187 38.0
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 9.0e-17 91.3 258 33.3
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 1.5e-16 90.5 193 38.9
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 3.4e-16 89.4 192 38.5
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 4.5e-16 89.0 91 57.1
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 5.9e-16 88.6 180 37.8
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 5.9e-16 88.6 192 38.5
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-15 87.8 186 38.2
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 2.2e-15 86.7 197 35.5
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 5.0e-15 85.5 145 42.1
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 6.5e-15 85.1 191 36.1
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 6.5e-15 85.1 191 36.1
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 6.5e-15 85.1 76 57.9
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 1.1e-14 84.3 189 38.1
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.2e-14 82.8 187 37.4
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 4.2e-14 82.4 192 38.0
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.2e-14 82.4 54 74.1
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.2e-14 82.4 54 74.1
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 5.5e-14 82.0 192 38.0
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 9.4e-14 81.3 192 38.0
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 1.2e-13 80.9 183 35.0
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.2e-13 80.9 148 40.5
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 2.7e-13 79.7 176 38.6
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 4.6e-13 79.0 191 35.1
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 7.9e-13 78.2 146 39.0
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 3.9e-12 75.9 120 42.5
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 3.9e-12 75.9 120 42.5
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 5.1e-12 75.5 88 50.0
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 5.1e-12 75.5 171 37.4
Actinidia15710 Actinidia chinensis HOM05D004036 ORTHO05D004576 1.5e-11 73.9 137 41.6
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 1.5e-11 73.9 207 33.8
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 2.0e-11 73.6 141 39.7
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 2.0e-11 73.6 141 39.7
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 2.5e-11 73.2 141 39.0
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 3.3e-11 72.8 150 39.3
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 5.7e-11 72.0 196 35.2
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 2.2e-10 70.1 141 39.0
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 4.8e-10 68.9 198 33.3
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 7.7e-08 61.6 45 64.4
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 1.7e-07 60.5 69 44.9
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 3.8e-07 59.3 171 29.8
unitig_85.g27159 Utricularia gibba HOM05D050274 ORTHO05D004576 5.0e-07 58.9 194 29.9
VMungo1309G1209 Vigna mungo HOM05D033454 ORTHO05D050263 6.5e-07 58.5 54 55.6
ATR0037G046 Amborella trichopoda HOM05D004036 ORTHO05D004576 1.1e-06 57.8 212 27.4


User provided reference genes

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