Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 1.1e-95 353.2 172 100.0
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 1.1e-95 353.2 172 100.0
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 8.9e-69 263.8 139 88.5
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 1.5e-68 263.1 139 87.8
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 1.5e-68 263.1 139 86.3
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 7.6e-68 260.8 139 86.3
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 1.4e-66 256.5 139 85.6
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 1.9e-66 256.1 139 85.6
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 3.2e-66 255.4 140 86.4
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 4.1e-66 255.0 139 82.7
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 5.4e-66 254.6 139 82.7
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 1.6e-65 253.1 139 84.9
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 2.1e-65 252.7 139 84.9
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 2.7e-65 252.3 139 84.2
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 3.5e-65 251.9 139 84.2
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 6.0e-65 251.1 139 83.5
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 7.8e-65 250.8 139 83.5
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 7.8e-65 250.8 139 82.7
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.0e-64 250.4 139 83.5
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 1.3e-64 250.0 139 83.5
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 1.7e-64 249.6 139 83.5
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 1.7e-64 249.6 139 82.7
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 3.0e-64 248.8 140 83.6
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 3.0e-64 248.8 139 81.3
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 3.9e-64 248.4 139 82.0
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 5.1e-64 248.1 139 81.3
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 6.6e-64 247.7 139 81.3
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 6.6e-64 247.7 139 81.3
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 6.6e-64 247.7 139 82.0
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 8.6e-64 247.3 139 82.7
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 1.1e-63 246.9 140 82.9
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 1.1e-63 246.9 140 82.9
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 1.1e-63 246.9 140 82.1
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 1.5e-63 246.5 139 81.3
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 1.5e-63 246.5 139 82.0
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 1.5e-63 246.5 139 81.3
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 1.5e-63 246.5 139 80.6
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 2.5e-63 245.7 139 81.3
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 2.5e-63 245.7 139 81.3
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 3.3e-63 245.4 139 82.0
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 4.3e-63 245.0 139 81.3
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 4.3e-63 245.0 139 80.6
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 7.3e-63 244.2 139 80.6
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 9.6e-63 243.8 139 79.9
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 9.6e-63 243.8 139 79.9
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 9.6e-63 243.8 139 80.6
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 2.1e-62 242.7 139 81.3
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.1e-62 242.7 139 79.9
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 3.6e-62 241.9 139 79.1
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 4.7e-62 241.5 139 79.1
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 6.2e-62 241.1 140 80.7
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 6.2e-62 241.1 140 80.7
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 6.2e-62 241.1 139 80.6
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 6.2e-62 241.1 139 79.9
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 8.1e-62 240.7 139 79.9
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 8.1e-62 240.7 139 79.9
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 1.1e-61 240.4 136 80.9
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 1.4e-61 240.0 139 78.4
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 1.4e-61 240.0 139 79.9
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 3.1e-61 238.8 139 77.0
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 1.2e-60 236.9 139 79.1
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 1.2e-60 236.9 139 79.9
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 1.5e-60 236.5 139 79.1
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 2.0e-60 236.1 140 80.0
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 2.6e-60 235.7 139 78.4
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 3.4e-60 235.3 139 79.1
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 4.4e-60 235.0 139 79.9
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 7.6e-60 234.2 139 79.1
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 7.6e-60 234.2 139 79.9
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 7.6e-60 234.2 139 79.9
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 9.9e-60 233.8 139 77.7
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 1.3e-59 233.4 139 78.4
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 1.3e-59 233.4 141 78.0
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 1.3e-59 233.4 139 77.0
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 1.7e-59 233.0 139 78.4
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 3.8e-59 231.9 139 77.7
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 4.9e-59 231.5 139 79.1
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 6.4e-59 231.1 139 78.4
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 8.4e-59 230.7 139 77.7
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 8.4e-59 230.7 139 78.4
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 8.4e-59 230.7 146 75.3
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 8.4e-59 230.7 139 77.7
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 1.1e-58 230.3 139 77.7
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 1.4e-58 229.9 139 77.0
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.4e-58 229.2 139 77.0
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 3.2e-58 228.8 139 77.7
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 5.4e-58 228.0 139 76.3
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 9.3e-58 227.3 139 76.3
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 1.6e-57 226.5 139 75.5
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 2.7e-57 225.7 139 74.1
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 2.7e-57 225.7 139 74.1
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 2.7e-57 225.7 139 75.5
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 3.5e-57 225.3 139 76.3
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 4.6e-57 224.9 139 75.5
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 4.6e-57 224.9 172 65.7
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 6.0e-57 224.6 139 74.8
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 6.0e-57 224.6 139 74.1
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 1.0e-56 223.8 141 77.3
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.3e-56 223.4 137 74.5
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 5.1e-56 221.5 139 75.5
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 1.5e-55 219.9 142 76.8
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 3.3e-55 218.8 139 73.4
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 3.3e-55 218.8 141 73.0
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 1.8e-53 213.0 170 61.8
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 1.2e-52 210.3 139 73.4
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 1.5e-52 209.9 139 72.7
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 2.0e-52 209.5 141 69.5
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 4.5e-52 208.4 139 68.3
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 9.9e-52 207.2 140 69.3
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 3.8e-51 205.3 111 89.2
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 7.9e-49 197.6 161 62.1
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 1.0e-48 197.2 128 75.0
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 5.1e-48 194.9 137 65.7
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 3.3e-47 192.2 141 65.2
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 2.4e-45 186.0 139 59.7
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 3.4e-44 182.2 298 39.3
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 3.5e-41 172.2 95 78.9
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 2.3e-40 169.5 94 81.9
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 3.8e-35 152.1 121 62.8
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 3.2e-34 149.1 139 57.6
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 5.1e-32 141.7 87 75.9
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 5.7e-31 138.3 131 56.5
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.2e-25 120.6 84 70.2
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 1.9e-23 113.2 66 78.8
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 1.1e-21 107.5 55 83.6
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 9.4e-18 94.4 50 82.0
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 2.7e-17 92.8 51 74.5
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 2.0e-15 86.7 44 81.8
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 1.0e-11 74.3 81 53.1
arahy.Tifrunner.gnm1.ann1.YGZX15 Arachis hypogaea HOM05D000254 ORTHO05D000165 9.4e-10 67.8 119 37.0
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 4.7e-09 65.5 88 39.8
Nitab4.5_0000250g0200 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.3e-06 57.4 82 45.1


User provided reference genes

Program Settings