Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2235 Acer truncatum HOM05D004606 ORTHO05D005086 5.3e-167 590.9 288 100.0
Ciclev10008268m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.3e-100 368.6 329 59.3
CSS0047394 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 1.6e-94 350.1 327 56.0
CSS0017380 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 7.9e-94 347.8 327 54.7
Lj7C716G6 Lonicera japonica HOM05D004606 ORTHO05D005086 8.7e-93 344.4 328 54.6
Lj5g0014776 Lotus japonicus HOM05D004606 ORTHO05D005086 5.6e-92 341.7 325 55.4
Nn2g11896 Nelumbo nucifera HOM05D004606 ORTHO05D005086 1.4e-90 337.0 329 53.2
Eucgr.C02826 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.8e-90 336.7 310 57.4
Oeu031575.3 Olea europaea HOM05D004606 ORTHO05D005086 5.3e-90 335.1 328 54.0
Rhsim02G0193100 Rhododendron simsii HOM05D004606 ORTHO05D005086 1.5e-89 333.6 327 52.0
TPR.G15650 Trifolium pratense HOM05D004606 ORTHO05D005086 1.5e-89 333.6 328 52.7
Cfa013195 Carpinus fangiana HOM05D004606 ORTHO05D005086 4.5e-89 332.0 328 53.7
GSVIVG01035774001 Vitis vinifera HOM05D004606 ORTHO05D005086 4.5e-89 332.0 327 53.8
TAR626G1705 Trochodendron aralioides HOM05D004606 ORTHO05D005086 5.8e-89 331.6 326 53.4
Hma1.2p1_0000F.1_g000990 Hydrangea macrophylla HOM05D004606 ORTHO05D005086 7.6e-89 331.3 327 53.2
MD15G1118300 Malus domestica HOM05D004606 ORTHO05D005086 7.6e-89 331.3 327 53.8
MBI04_g33818_MAGBIO Magnolia biondii HOM05D004606 ORTHO05D005086 2.9e-88 329.3 329 51.7
Sabra18G0033400 Salix brachista HOM05D004606 ORTHO05D005086 2.9e-88 329.3 328 53.7
Glyma.17G206700 Glycine max HOM05D004606 ORTHO05D005086 4.9e-88 328.6 329 53.8
arahy.Tifrunner.gnm1.ann1.K28DE3 Arachis hypogaea HOM05D004606 ORTHO05D005086 1.9e-87 326.6 334 51.8
Cc11_g01620 Coffea canephora HOM05D004606 ORTHO05D005086 2.5e-87 326.2 326 52.1
Medtr1g011690 Medicago truncatula HOM05D004606 ORTHO05D005086 2.5e-87 326.2 328 51.5
QL04p042401 Quercus lobata HOM05D004606 ORTHO05D005086 3.2e-87 325.9 325 52.6
Sopen08g021410 Solanum pennellii HOM05D004606 ORTHO05D005086 4.2e-87 325.5 325 52.9
Thecc.09G147400 Theobroma cacao HOM05D004606 ORTHO05D005086 5.5e-87 325.1 328 54.0
Lsat_1_v5_gn_1_40980 Lactuca sativa HOM05D004606 ORTHO05D005086 7.1e-87 324.7 331 51.7
PGSC0003DMG400025535 Solanum tuberosum HOM05D004606 ORTHO05D005086 9.3e-87 324.3 325 52.9
QL04p042370 Quercus lobata HOM05D004606 ORTHO05D005086 1.2e-86 323.9 325 52.3
Solyc08g067470.3 Solanum lycopersicum HOM05D004606 ORTHO05D005086 1.2e-86 323.9 325 52.6
BcaB08g37070 Brassica carinata HOM05D004606 ORTHO05D005086 1.6e-86 323.6 327 51.1
Potri.018G032500 Populus trichocarpa HOM05D004606 ORTHO05D005086 2.7e-86 322.8 328 53.7
QL04p042484 Quercus lobata HOM05D004606 ORTHO05D005086 4.6e-86 322.0 325 52.6
C09p65540 Brassica napus HOM05D004606 ORTHO05D005086 1.3e-85 320.5 326 50.9
Migut.A00299 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.3e-85 320.5 326 50.3
BcaC04g19239 Brassica carinata HOM05D004606 ORTHO05D005086 1.8e-85 320.1 326 50.9
AL6G21980 Arabidopsis lyrata HOM05D004606 ORTHO05D005086 2.3e-85 319.7 329 49.2
Gohir.D03G064400 Gossypium hirsutum HOM05D004606 ORTHO05D005086 2.3e-85 319.7 311 54.7
TWI63G0154 Tripterygium wilfordii HOM05D004606 ORTHO05D005086 2.3e-85 319.7 330 52.4
BraA10t44697Z Brassica rapa HOM05D004606 ORTHO05D005086 3.0e-85 319.3 323 50.8
Duzib187G0213 Durio zibethinus HOM05D004606 ORTHO05D005086 3.9e-85 318.9 327 52.9
Phvul.001G053900 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 3.9e-85 318.9 330 52.1
Gohir.A02G109707 Gossypium hirsutum HOM05D004606 ORTHO05D005086 5.1e-85 318.5 328 53.4
A10p26400 Brassica napus HOM05D004606 ORTHO05D005086 6.7e-85 318.2 326 50.3
AUR62032354 Chenopodium quinoa HOM05D004606 ORTHO05D005086 6.7e-85 318.2 328 52.1
BolC9t59377H Brassica oleracea HOM05D004606 ORTHO05D005086 2.5e-84 316.2 326 50.6
FAN27G1511 Fragaria x ananassa HOM05D004606 ORTHO05D005086 2.5e-84 316.2 312 51.9
Ca_13137_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 3.3e-84 315.8 328 51.2
Duzib168G1788 Durio zibethinus HOM05D004606 ORTHO05D005086 5.7e-84 315.1 329 52.0
Thhalv10013697m.g Eutrema salsugineum HOM05D004606 ORTHO05D005086 5.7e-84 315.1 329 49.5
AT5G11330 Arabidopsis thaliana HOM05D004606 ORTHO05D005086 9.6e-84 314.3 329 48.9
CARHR201940 Cardamine hirsuta HOM05D004606 ORTHO05D005086 1.3e-83 313.9 328 49.1
Gorai.013G110500 Gossypium raimondii HOM05D004606 ORTHO05D005086 1.6e-83 313.5 328 52.1
Manes.16G118200 Manihot esculenta HOM05D004606 ORTHO05D005086 1.6e-83 313.5 327 50.2
Phvul.001G053700 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 4.8e-83 312.0 325 51.7
RcHm_v2.0_Chr6g0298811 Rosa chinensis HOM05D004606 ORTHO05D005086 6.3e-83 311.6 327 50.5
FvH4_2g29790 Fragaria vesca HOM05D004606 ORTHO05D005086 8.2e-83 311.2 327 50.2
Nitab4.5_0002339g0060 Nicotiana tabacum HOM05D004606 ORTHO05D005086 8.2e-83 311.2 325 52.0
Oeu045189.1 Olea europaea HOM05D004606 ORTHO05D005086 8.2e-83 311.2 328 48.8
Peaxi162Scf00251g01122 Petunia axillaris HOM05D004606 ORTHO05D005086 8.2e-83 311.2 325 51.4
Prupe.1G471700 Prunus persica HOM05D004606 ORTHO05D005086 1.1e-82 310.8 328 50.3
Carub.0006s0979 Capsella rubella HOM05D004606 ORTHO05D005086 1.8e-82 310.1 329 48.0
FAN15G1610 Fragaria x ananassa HOM05D004606 ORTHO05D005086 2.4e-82 309.7 327 49.8
Lalb_Chr22g0361571 Lupinus albus HOM05D004606 ORTHO05D005086 2.4e-82 309.7 329 50.8
Nitab4.5_0000508g0210 Nicotiana tabacum HOM05D004606 ORTHO05D005086 3.1e-82 309.3 325 51.4
CiPaw.07G219400 Carya illinoinensis HOM05D004606 ORTHO05D005086 4.1e-82 308.9 329 51.1
MD08G1141800 Malus domestica HOM05D004606 ORTHO05D005086 4.1e-82 308.9 327 49.8
PGR044G0860 Punica granatum HOM05D004606 ORTHO05D005086 4.1e-82 308.9 328 51.5
PSO017G2258 Papaver somniferum HOM05D004606 ORTHO05D005086 9.0e-82 307.8 327 49.8
PSO170G2975 Papaver somniferum HOM05D004606 ORTHO05D005086 9.0e-82 307.8 327 49.8
Sp6g32250 Schrenkiella parvula HOM05D004606 ORTHO05D005086 9.0e-82 307.8 326 49.4
vmacro11130 Vaccinium macrocarpon HOM05D004606 ORTHO05D005086 1.5e-81 307.0 328 49.7
VMungo0647G1004 Vigna mungo HOM05D004606 ORTHO05D005086 1.5e-81 307.0 330 50.9
EL10Ac2g02564 Beta vulgaris HOM05D004606 ORTHO05D005086 2.0e-81 306.6 324 50.9
FAN24G2357 Fragaria x ananassa HOM05D004606 ORTHO05D005086 2.0e-81 306.6 327 49.8
Ca_12923_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 3.4e-81 305.8 328 50.6
Oeu045190.1 Olea europaea HOM05D004606 ORTHO05D005086 3.4e-81 305.8 328 48.2
Ciclev10010533m.g Citrus clementina HOM05D004606 ORTHO05D005086 7.6e-81 304.7 294 52.4
THA.LOC104815034 Tarenaya hassleriana HOM05D004606 ORTHO05D005086 2.9e-80 302.8 326 50.0
MELO3C011226.2 Cucumis melo HOM05D004606 ORTHO05D005086 6.5e-80 301.6 329 50.2
Sed0001356 Sechium edule HOM05D004606 ORTHO05D005086 8.5e-80 301.2 329 49.2
Ciclev10010301m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.2e-79 299.3 326 48.5
SGA_v2.0_scaffold448G51772 Striga asiatica HOM05D004606 ORTHO05D005086 1.2e-78 297.4 326 47.2
CsaV3_2G031750 Cucumis sativus L. HOM05D004606 ORTHO05D005086 1.6e-78 297.0 329 48.6
Eucgr.C02822 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.7e-78 296.2 326 48.5
CSS0006183 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 3.6e-78 295.8 328 47.9
Eucgr.C02820 Eucalyptus grandis HOM05D004606 ORTHO05D005086 3.0e-77 292.7 326 48.2
Oeu045188.1 Olea europaea HOM05D004606 ORTHO05D005086 5.1e-77 292.0 328 45.7
Aqoxy7G01977_Aqoxy7G01978 Aquilegia oxysepala HOM05D004606 ORTHO05D005086 6.7e-77 291.6 326 49.4
Aa31LG3G15860 Aethionema arabicum HOM05D004606 ORTHO05D005086 4.3e-76 288.9 325 46.5
Ciclev10008396m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.3e-76 288.9 328 44.5
Eucgr.C02823 Eucalyptus grandis HOM05D004606 ORTHO05D005086 7.4e-76 288.1 326 47.2
Ciclev10008398m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.3e-75 287.3 328 44.5
Ciclev10008369m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.6e-75 287.0 327 45.3
Eucgr.C02825 Eucalyptus grandis HOM05D004606 ORTHO05D005086 6.3e-75 285.0 324 46.9
Ciclev10010634m.g Citrus clementina HOM05D004606 ORTHO05D005086 8.2e-75 284.6 331 43.5
Migut.A00296 Erythranthe guttata HOM05D004606 ORTHO05D005086 8.2e-75 284.6 330 44.5
PGR044G1635 Punica granatum HOM05D004606 ORTHO05D005086 1.4e-74 283.9 329 46.5
Eucgr.L02556 Eucalyptus grandis HOM05D004606 ORTHO05D005086 3.1e-74 282.7 326 45.1
Migut.A00292 Erythranthe guttata HOM05D004606 ORTHO05D005086 5.3e-74 282.0 329 44.4
Ciclev10008384m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.0e-73 280.0 327 43.4
Ciclev10010709m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.0e-72 277.7 335 46.6
Migut.A00293 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.7e-72 276.9 328 45.7
Ciclev10008450m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.9e-72 276.2 316 44.6
Psat6g030120 Pisum sativum HOM05D004606 ORTHO05D005086 1.6e-70 270.4 329 45.6
Migut.A00297 Erythranthe guttata HOM05D004606 ORTHO05D005086 3.6e-70 269.2 329 45.0
ATR0051G060 Amborella trichopoda HOM05D004606 ORTHO05D005086 6.1e-70 268.5 324 45.4
ClCG08G013020 Citrullus lanatus HOM05D004606 ORTHO05D005086 6.1e-70 268.5 328 40.5
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 6.1e-70 268.5 327 45.3
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 6.1e-70 268.5 327 45.3
arahy.Tifrunner.gnm1.ann1.Z34R6V Arachis hypogaea HOM05D004606 ORTHO05D005086 7.9e-70 268.1 326 46.3
CsaV3_2G031760 Cucumis sativus L. HOM05D004606 ORTHO05D005086 3.0e-69 266.2 327 41.3
COL.COLO4_24007 Corchorus olitorius HOM05D004606 ORTHO05D005086 1.5e-68 263.8 298 49.0
MELO3C011227.2 Cucumis melo HOM05D004606 ORTHO05D005086 2.6e-68 263.1 329 42.2
Sc09g0008700 Simmondsia chinensis HOM05D004606 ORTHO05D005086 6.3e-67 258.5 331 44.1
COL.COLO4_24006 Corchorus olitorius HOM05D004606 ORTHO05D005086 6.9e-66 255.0 272 53.3
Dinv11601 Davidia involucrata HOM05D004606 ORTHO05D005086 1.5e-65 253.8 283 49.1
PGR044G2107 Punica granatum HOM05D004606 ORTHO05D005086 4.5e-65 252.3 299 47.8
ClCG08G013030 Citrullus lanatus HOM05D004606 ORTHO05D005086 3.8e-64 249.2 328 40.5
Eucgr.L01636 Eucalyptus grandis HOM05D004606 ORTHO05D005086 7.2e-63 245.0 296 46.3
Medtr1g011700 Medicago truncatula HOM05D004606 ORTHO05D005086 9.4e-63 244.6 313 46.6
ECA233G1913 Erigeron canadensis HOM05D004606 ORTHO05D005086 6.1e-62 241.9 283 47.3
SEGI_39416 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 1.8e-61 240.4 328 42.7
TPR.G15652 Trifolium pratense HOM05D004606 ORTHO05D005086 9.7e-60 234.6 263 49.0
SEGI_00162 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 2.2e-59 233.4 324 42.9
Eucgr.L01635 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.6e-57 227.3 326 41.7
Zm00001eb385840 Zea mays HOM05D004606 ORTHO05D005086 1.7e-56 223.8 325 39.7
Eucgr.C02829 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.5e-55 219.9 283 46.3
TAR626G0087 Trochodendron aralioides HOM05D004606 ORTHO05D005086 2.1e-54 216.9 260 45.0
Os06g0597600 Oryza sativa ssp. japonica HOM05D004606 ORTHO05D005086 4.7e-54 215.7 328 38.7
Haze_21597 Corylus avellana HOM05D004606 ORTHO05D005086 3.0e-53 213.0 274 48.2
Potri.006G248800 Populus trichocarpa HOM05D004606 ORTHO05D005086 1.2e-52 211.1 254 46.9
Pp3c18_1340 Physcomitrium patens HOM05D004606 ORTHO05D005086 3.3e-52 209.5 335 34.9
CAN.G211.3 Capsicum annuum HOM05D004606 ORTHO05D005086 3.7e-51 206.1 271 43.2
AagrBONN_evm.TU.Sc2ySwM_368.1911 Anthoceros agrestis HOM05D004606 ORTHO05D005086 1.4e-50 204.1 273 40.7
Cpa.g.sc91.30 Carica papaya HOM05D004606 ORTHO05D005086 1.8e-50 203.8 128 68.8
AUR62041849 Chenopodium quinoa HOM05D004606 ORTHO05D005086 3.1e-50 203.0 225 46.2
Mapoly0132s0019 Marchantia polymorpha HOM05D004606 ORTHO05D005086 2.0e-49 200.3 327 37.9
PGR044G1641 Punica granatum HOM05D004606 ORTHO05D005086 4.4e-44 182.6 263 39.5
Atru.chr7.2355 Acer truncatum HOM05D004606 ORTHO05D005086 2.2e-43 180.3 239 41.0
Ciclev10010537m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.9e-40 169.9 275 40.0
Glyma.14G127200 Glycine max HOM05D004606 ORTHO05D005086 3.8e-40 169.5 259 40.2
MD15G1335000 Malus domestica HOM05D004606 ORTHO05D005086 1.3e-35 154.5 101 67.3
Ciclev10010790m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.3e-32 143.7 181 44.8
Ciclev10010356m.g Citrus clementina HOM05D004606 ORTHO05D005086 6.6e-32 142.1 121 57.0
SalBow4G2310 Salvia bowleyana HOM05D004606 ORTHO05D005086 2.1e-30 137.1 122 55.7
Cc11_g01610 Coffea canephora HOM05D004606 ORTHO05D005086 3.7e-27 126.3 80 72.5
SalBow6G2354 Salvia bowleyana HOM05D004606 ORTHO05D005086 5.6e-23 112.5 120 49.2
SalBow6G5372 Salvia bowleyana HOM05D004606 ORTHO05D005086 5.6e-23 112.5 120 49.2
QL04p042408 Quercus lobata HOM05D004606 ORTHO05D005086 4.0e-21 106.3 65 70.8
CAN.G98.22 Capsicum annuum HOM05D004606 ORTHO05D005086 2.0e-17 94.0 81 59.3
MSTRG.25861 Avicennia marina HOM05D004606 ORTHO05D005086 6.6e-16 89.0 49 75.5


User provided reference genes

Program Settings