Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 6.1e-64 247.3 122 100.0
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 1.9e-49 199.1 111 89.2
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.3e-45 186.4 97 93.8
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 1.9e-41 172.6 97 83.5
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 1.9e-41 172.6 97 83.5
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 2.5e-41 172.2 97 83.5
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 2.5e-41 172.2 97 82.5
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 3.3e-41 171.8 97 82.5
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 3.3e-41 171.8 97 82.5
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 5.6e-41 171.0 97 81.4
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 5.6e-41 171.0 97 81.4
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 9.5e-41 170.2 98 80.6
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 9.5e-41 170.2 97 81.4
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 2.1e-40 169.1 97 80.4
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.8e-40 168.7 97 79.4
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 2.8e-40 168.7 97 81.4
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 3.6e-40 168.3 97 81.4
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 3.6e-40 168.3 97 80.4
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 4.7e-40 167.9 97 83.5
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 4.7e-40 167.9 97 80.4
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 6.2e-40 167.5 97 79.4
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 8.1e-40 167.2 97 78.4
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 8.1e-40 167.2 97 80.4
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.1e-39 166.8 97 79.4
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 1.4e-39 166.4 97 80.4
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 1.8e-39 166.0 97 78.4
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 1.8e-39 166.0 97 80.4
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 1.8e-39 166.0 97 77.3
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 1.8e-39 166.0 97 78.4
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 1.8e-39 166.0 97 81.4
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 3.1e-39 165.2 97 79.4
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 3.1e-39 165.2 97 78.4
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 4.0e-39 164.9 97 77.3
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 4.0e-39 164.9 97 79.4
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 4.0e-39 164.9 97 79.4
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 1.5e-38 162.9 97 76.3
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.5e-38 162.9 97 75.3
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 2.0e-38 162.5 97 78.4
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 2.6e-38 162.2 97 78.4
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 2.6e-38 162.2 97 76.3
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 2.6e-38 162.2 97 79.4
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 3.4e-38 161.8 97 77.3
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 4.4e-38 161.4 97 76.3
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 4.4e-38 161.4 97 76.3
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 4.4e-38 161.4 97 77.3
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 5.8e-38 161.0 97 75.3
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 5.8e-38 161.0 97 78.4
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 5.8e-38 161.0 97 78.4
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 7.6e-38 160.6 97 76.3
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 9.9e-38 160.2 97 77.3
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 9.9e-38 160.2 97 75.3
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 9.9e-38 160.2 97 76.3
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 1.3e-37 159.8 97 78.4
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 1.7e-37 159.5 97 73.2
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 1.7e-37 159.5 97 75.3
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 1.7e-37 159.5 97 74.2
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 2.2e-37 159.1 97 73.2
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 2.2e-37 159.1 97 74.2
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 3.7e-37 158.3 97 74.2
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 4.9e-37 157.9 97 73.2
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 4.9e-37 157.9 97 77.3
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 4.9e-37 157.9 97 73.2
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 4.9e-37 157.9 97 74.2
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 4.9e-37 157.9 97 71.1
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 4.9e-37 157.9 97 74.2
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 4.9e-37 157.9 97 75.3
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 4.9e-37 157.9 97 76.3
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 8.3e-37 157.1 97 72.2
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 8.3e-37 157.1 97 73.2
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 8.3e-37 157.1 97 73.2
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.1e-36 156.8 97 73.2
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 1.4e-36 156.4 97 73.2
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 1.4e-36 156.4 97 72.2
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 1.9e-36 156.0 97 75.3
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 1.9e-36 156.0 97 75.3
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 1.9e-36 156.0 98 73.5
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 2.4e-36 155.6 97 74.2
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 2.4e-36 155.6 97 75.3
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 3.2e-36 155.2 97 72.2
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 4.1e-36 154.8 97 74.2
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 9.2e-36 153.7 97 74.2
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 1.6e-35 152.9 97 71.1
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.6e-35 152.9 97 70.1
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 2.1e-35 152.5 97 70.1
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 2.7e-35 152.1 97 71.1
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 3.5e-35 151.8 97 73.2
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 4.6e-35 151.4 97 69.1
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 6.0e-35 151.0 97 69.1
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 6.0e-35 151.0 97 69.1
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 6.0e-35 151.0 97 69.1
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 6.0e-35 151.0 97 69.1
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 7.8e-35 150.6 97 69.1
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 7.8e-35 150.6 97 69.1
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 7.8e-35 150.6 97 69.1
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 1.0e-34 150.2 97 71.1
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 2.3e-34 149.1 90 77.8
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 5.1e-34 147.9 93 76.3
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 1.1e-33 146.7 97 69.1
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 7.3e-33 144.1 97 66.0
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 3.6e-32 141.7 97 62.9
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 2.6e-30 135.6 97 66.0
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 9.3e-28 127.1 80 72.5
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 1.6e-27 126.3 79 74.7
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 1.6e-27 126.3 97 57.7
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 3.0e-26 122.1 104 60.6
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 1.1e-20 103.6 65 80.0
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.4e-20 103.2 126 46.0
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 3.5e-19 98.6 72 70.8
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 5.6e-17 91.3 86 50.0
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 8.1e-16 87.4 86 47.7
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.8e-15 86.3 88 44.3
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 2.9e-13 79.0 87 43.7
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 2.5e-09 65.9 88 45.5
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 2.1e-08 62.8 48 72.9
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 2.1e-08 62.8 48 72.9
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 1.5e-06 56.6 37 78.4


User provided reference genes

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