Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 3.0e-114 415.2 216 100.0
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 1.3e-109 399.8 216 95.8
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.5e-108 395.6 216 94.4
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 7.2e-108 394.0 216 93.5
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 3.9e-106 388.3 216 91.7
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 6.7e-106 387.5 216 91.2
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 1.1e-105 386.7 216 92.1
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.0e-105 386.0 216 91.2
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 91.2
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 7.4e-105 384.0 216 91.2
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 7.4e-105 384.0 216 91.2
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 1.3e-104 383.3 216 90.7
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 90.7
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 90.7
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 90.3
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 90.3
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 89.8
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 89.8
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 89.8
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 89.8
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 6.3e-104 380.9 215 89.8
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 88.9
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 90.3
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 90.3
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 89.4
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 88.9
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 4.1e-103 378.3 216 89.8
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 89.4
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 89.4
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 90.3
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 89.4
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 88.9
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 89.4
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 88.9
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 88.4
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 88.9
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 88.9
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 1.6e-102 376.3 215 88.8
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 89.4
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 89.4
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 88.9
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 88.9
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 87.0
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 86.6
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 86.6
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 88.4
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 88.4
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.0
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 89.8
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.0e-101 373.6 214 89.3
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 86.1
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 86.1
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.0
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.4
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.4
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.9
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.4
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 88.9
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 88.0
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 88.9
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 89.4
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 88.0
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 86.6
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 88.9
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 88.4
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 87.0
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 85.6
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 85.6
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 85.6
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 85.2
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 85.2
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 85.2
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 87.5
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 88.4
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 88.0
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 87.0
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.1e-100 370.2 227 85.9
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 88.0
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 1.5e-100 369.8 220 87.3
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 88.4
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 87.5
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 88.0
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.2e-100 368.6 215 86.5
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 85.2
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 87.0
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 84.3
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 84.3
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 84.3
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 7.2e-100 367.5 215 87.9
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 87.5
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 83.8
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 83.8
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 85.2
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.3
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 87.0
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 83.8
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 8.0e-99 364.0 216 85.6
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 8.0e-99 364.0 221 86.4
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 86.6
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 86.1
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 86.1
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 1.3e-96 356.7 216 83.8
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 1.3e-96 356.7 216 85.2
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.4e-95 353.2 217 85.3
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 3.1e-95 352.1 221 81.9
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 3.1e-95 352.1 199 91.0
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 1.2e-94 350.1 216 81.5
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 3.5e-94 348.6 216 78.7
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 5.0e-93 344.7 216 84.3
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 5.5e-92 341.3 216 83.8
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 7.2e-92 340.9 216 83.3
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 3.6e-91 338.6 221 81.0
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 6.8e-90 334.3 216 81.0
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 6.8e-90 334.3 216 81.0
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.2e-89 333.6 216 78.2
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 4.4e-89 331.6 216 79.6
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 4.4e-89 331.6 218 78.0
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.8e-88 328.9 216 77.3
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 6.3e-88 327.8 216 78.2
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 1.1e-87 327.0 216 77.8
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.4e-87 326.6 216 73.1
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 1.8e-87 326.2 216 79.6
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 2.7e-86 322.4 181 90.1
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 5.0e-85 318.2 215 79.5
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 6.5e-85 317.8 216 78.7
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 6.1e-83 311.2 165 92.7
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 5.2e-82 308.1 165 93.3
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 1.2e-81 307.0 216 76.9
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 3.7e-80 302.0 165 90.3
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 4.1e-79 298.5 276 62.0
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 2.7e-78 295.8 216 74.5
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.0e-77 293.9 216 74.1
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.0e-77 293.9 216 74.1
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 2.3e-77 292.7 217 70.0
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.7e-75 285.0 216 69.9
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 6.1e-75 284.6 216 70.8
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 1.8e-74 283.1 217 70.5
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 2.0e-73 279.6 203 76.4
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.6e-73 279.3 216 71.8
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 1.2e-70 270.4 353 49.0
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 2.7e-70 269.2 165 84.8
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 6.6e-69 264.6 180 81.1
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 3.3e-68 262.3 144 84.0
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 4.7e-67 258.5 217 68.7
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 5.2e-58 228.4 219 56.2
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 4.9e-56 221.9 233 53.2
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.6e-51 206.8 273 52.0
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 6.8e-50 201.4 108 87.0
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 6.8e-50 201.4 108 87.0
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 3.4e-49 199.1 136 80.9
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 3.5e-46 189.1 219 47.5
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 7.3e-44 181.4 135 73.3
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 3.6e-43 179.1 204 46.6
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 3.2e-39 166.0 114 80.7
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 4.2e-39 165.6 97 80.4
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.2e-38 164.1 106 76.4
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.5e-36 157.1 84 83.3
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 1.9e-36 156.8 81 91.4
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 4.8e-35 152.1 101 84.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 4.8e-35 152.1 101 84.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 4.8e-35 152.1 101 84.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 4.8e-35 152.1 101 84.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 4.8e-35 152.1 101 84.2
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.4e-34 150.6 81 87.7
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 3.6e-27 125.9 71 77.5
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.3e-19 100.9 63 85.7
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.3e-19 100.9 74 78.4
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.7e-16 90.5 66 77.3
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 4.8e-11 72.4 39 82.1
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.8e-10 70.5 39 79.5
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 5.3e-10 68.9 48 70.8
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 5.3e-10 68.9 48 70.8
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 5.3e-10 68.9 48 70.8
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 2.0e-09 67.0 48 68.8


User provided reference genes

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