Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 1.5e-98 362.8 186 100.0
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.7e-12 77.0 44 81.8
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.7e-12 77.0 44 81.8
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 2.9e-12 76.3 58 69.0
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 3.7e-12 75.9 58 69.0
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.9e-12 75.5 44 79.5
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 4.9e-12 75.5 58 65.5
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 4.9e-12 75.5 44 81.8
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 4.9e-12 75.5 58 67.2
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 6.4e-12 75.1 58 67.2
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 6.4e-12 75.1 44 79.5
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 6.4e-12 75.1 44 79.5
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 6.4e-12 75.1 44 79.5
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 6.4e-12 75.1 44 79.5
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 8.3e-12 74.7 58 67.2
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 8.3e-12 74.7 44 79.5
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 8.3e-12 74.7 44 79.5
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 8.3e-12 74.7 44 79.5
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.3e-12 74.7 44 79.5
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 1.1e-11 74.3 44 77.3
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 1.1e-11 74.3 44 77.3
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.1e-11 74.3 44 79.5
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 1.4e-11 73.9 44 79.5
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 1.4e-11 73.9 58 65.5
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 1.4e-11 73.9 44 79.5
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 1.4e-11 73.9 44 79.5
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.9e-11 73.6 44 77.3
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 1.9e-11 73.6 44 79.5
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 2.4e-11 73.2 44 77.3
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.4e-11 73.2 44 77.3
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.4e-11 73.2 44 77.3
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 2.4e-11 73.2 44 79.5
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.4e-11 73.2 44 79.5
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 2.4e-11 73.2 55 67.3
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 2.4e-11 73.2 43 81.4
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 2.4e-11 73.2 44 77.3
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 3.2e-11 72.8 44 79.5
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 3.2e-11 72.8 44 79.5
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 3.2e-11 72.8 44 77.3
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 4.1e-11 72.4 44 77.3
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 4.1e-11 72.4 44 77.3
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 5.4e-11 72.0 49 73.5
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.4e-11 72.0 44 75.0
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 5.4e-11 72.0 43 79.1
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 5.4e-11 72.0 56 64.3
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 9.2e-11 71.2 48 72.9
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 9.2e-11 71.2 58 60.3
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.6e-10 70.5 40 82.5
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 1.6e-10 70.5 44 72.7
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.6e-10 70.5 44 77.3
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.6e-10 70.5 53 67.9
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.0e-10 70.1 44 77.3
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.0e-10 70.1 44 75.0
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.0e-10 70.1 44 75.0
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 2.0e-10 70.1 44 77.3
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.0e-10 70.1 44 75.0
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.7e-10 69.7 44 75.0
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 2.7e-10 69.7 48 70.8
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 2.7e-10 69.7 44 75.0
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 2.7e-10 69.7 48 68.8
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.5e-10 69.3 44 72.7
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.5e-10 69.3 44 72.7
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 4.6e-10 68.9 44 75.0
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 4.6e-10 68.9 44 75.0
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 4.6e-10 68.9 44 70.5
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 6.0e-10 68.6 58 60.3
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 6.0e-10 68.6 48 68.8
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 6.0e-10 68.6 55 65.5
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 6.0e-10 68.6 44 75.0
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 7.8e-10 68.2 51 64.7
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 7.8e-10 68.2 44 75.0
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 7.8e-10 68.2 44 75.0
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 7.8e-10 68.2 44 75.0
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 7.8e-10 68.2 53 66.0
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.0e-09 67.8 44 70.5
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.0e-09 67.8 58 58.6
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 1.0e-09 67.8 44 72.7
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.0e-09 67.8 44 72.7
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.0e-09 67.8 44 72.7
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.0e-09 67.8 44 75.0
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.3e-09 67.4 58 60.3
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.3e-09 67.4 44 70.5
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.3e-09 67.4 52 67.3
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.7e-09 67.0 58 58.6
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 1.7e-09 67.0 58 62.1
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.3e-09 66.6 58 56.9
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 3.0e-09 66.2 59 57.6
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 3.0e-09 66.2 44 70.5
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 3.0e-09 66.2 58 60.3
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 5.0e-09 65.5 44 65.9
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 5.0e-09 65.5 59 55.9
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 6.6e-09 65.1 46 67.4
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 6.6e-09 65.1 44 70.5
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 8.6e-09 64.7 44 70.5
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 8.6e-09 64.7 44 70.5
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 8.6e-09 64.7 69 55.1
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 1.1e-08 64.3 44 68.2
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.1e-08 64.3 58 58.6
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.5e-08 63.9 58 58.6
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.5e-08 63.9 44 65.9
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.5e-08 63.9 59 55.9
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.9e-08 63.5 37 78.4
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 2.5e-08 63.2 44 68.2
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 2.5e-08 63.2 44 70.5
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 2.5e-08 63.2 42 69.0
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 3.3e-08 62.8 44 65.9
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 4.3e-08 62.4 44 68.2
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 4.3e-08 62.4 44 63.6
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 4.3e-08 62.4 44 63.6
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 5.6e-08 62.0 44 68.2
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 9.5e-08 61.2 44 65.9
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 9.5e-08 61.2 44 65.9
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 9.5e-08 61.2 58 56.9
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 9.5e-08 61.2 58 55.2
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 1.2e-07 60.8 69 53.6
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.2e-07 60.8 44 63.6
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 1.6e-07 60.5 58 55.2
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 1.6e-07 60.5 58 56.9
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 2.1e-07 60.1 69 53.6
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 2.1e-07 60.1 58 55.2
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 2.8e-07 59.7 41 68.3
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 3.6e-07 59.3 69 53.6
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 6.2e-07 58.5 41 68.3
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 8.0e-07 58.2 44 63.6
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.8e-06 57.0 51 58.8
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 2.3e-06 56.6 41 65.9


User provided reference genes

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