Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 2.0e-152 542.3 263 100.0
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 4.5e-80 302.0 265 61.5
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 4.9e-66 255.4 260 52.3
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 4.1e-65 252.3 252 53.6
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 2.0e-64 250.0 253 50.2
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 3.8e-63 245.7 254 52.0
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 4.3e-62 242.3 272 48.5
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 4.3e-62 242.3 265 50.2
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 2.3e-60 236.5 263 50.6
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 6.8e-60 235.0 272 48.9
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 4.4e-59 232.3 263 49.8
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.7e-58 229.2 263 49.4
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.7e-58 229.2 263 49.0
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.9e-58 228.8 265 49.4
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 8.3e-58 228.0 263 48.3
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 1.1e-57 227.6 276 48.6
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 1.0e-55 221.1 246 49.2
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.3e-54 216.1 263 46.8
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 7.3e-54 214.9 270 46.3
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.4e-52 210.7 270 47.0
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.1e-52 209.5 270 47.4
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.1e-52 209.5 274 47.1
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 4.1e-49 199.1 269 45.7
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 5.4e-49 198.7 269 42.8
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 9.2e-49 198.0 270 43.0
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 6.0e-48 195.3 275 45.5
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.3e-47 194.1 293 42.3
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.9e-47 192.6 270 42.6
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.1e-46 191.0 267 42.7
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 2.5e-46 189.9 270 42.2
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.5e-46 188.0 270 41.9
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.8e-44 183.7 270 43.7
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 5.2e-44 182.2 271 40.2
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 3.3e-38 162.9 286 37.4
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 9.5e-38 161.4 245 41.6
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.8e-37 159.8 291 37.8
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.4e-33 147.5 277 37.2
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.1e-32 143.7 261 38.7
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.7e-32 143.3 272 38.6
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.8e-28 130.6 259 35.9
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 3.1e-28 129.8 275 34.5
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 5.2e-28 129.0 177 41.8
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 6.9e-28 128.6 263 31.6
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.2e-27 127.9 285 34.4
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 7.6e-27 125.2 271 33.2
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.3e-26 124.4 272 34.6
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 3.8e-26 122.9 272 34.2
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 8.4e-26 121.7 245 35.1
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 8.4e-26 121.7 245 35.1
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.4e-25 120.9 247 36.4
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.9e-25 120.6 257 36.6
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.9e-25 120.6 263 30.8
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 2.4e-25 120.2 272 33.5
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.6e-24 117.5 263 30.0
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.7e-23 114.0 246 35.4
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 4.3e-22 109.4 272 34.6
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 4.3e-22 109.4 274 31.8
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.6e-21 107.5 242 36.8
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.6e-21 106.3 232 35.3
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 8.1e-21 105.1 244 34.0
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 1.1e-20 104.8 273 31.1
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 1.4e-20 104.4 270 34.4
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 9.0e-20 101.7 218 29.8
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 5.8e-19 99.0 273 30.4
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.7e-18 97.4 246 34.6
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 3.8e-18 96.3 261 33.3
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 4.9e-18 95.9 225 33.3
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 6.4e-18 95.5 267 33.7
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.9e-17 94.0 272 29.8
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 5.4e-17 92.4 221 30.3
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 1.6e-16 90.9 235 31.9
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 3.5e-16 89.7 268 30.2
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.0e-15 88.2 233 30.5
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 2.3e-15 87.0 241 34.0
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.1e-14 84.7 220 33.2
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 3.3e-14 83.2 243 32.1
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.3e-14 83.2 264 31.8
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.3e-14 83.2 248 29.0
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.3e-13 81.3 228 29.4
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.1e-13 80.5 246 29.3
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 2.1e-13 80.5 233 30.0
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 2.1e-13 80.5 233 30.0
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 3.7e-13 79.7 238 32.8
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 3.7e-13 79.7 243 31.7
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.4e-12 77.8 117 35.0
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 2.4e-12 77.0 181 32.0
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 3.1e-12 76.6 235 29.8
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 5.3e-12 75.9 233 29.2
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 6.9e-12 75.5 181 32.0
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 1.2e-11 74.7 181 32.6
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 2.6e-11 73.6 271 30.3
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 3.4e-11 73.2 235 29.4
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 3.4e-11 73.2 194 32.5
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 4.5e-11 72.8 260 30.0
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 4.5e-11 72.8 260 30.0
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 4.5e-11 72.8 260 30.0
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 7.6e-11 72.0 239 31.0
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.3e-10 71.2 177 31.6
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 2.2e-10 70.5 232 31.0
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.8e-10 69.7 264 29.9
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 4.9e-10 69.3 237 30.0
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 6.4e-10 68.9 164 34.8
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 8.4e-10 68.6 259 30.1
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 2.4e-09 67.0 184 32.1
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.2e-09 66.6 164 33.5
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 9.3e-09 65.1 262 28.6
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 4.6e-08 62.8 279 26.9
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.0e-07 61.6 149 32.9
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 3.0e-07 60.1 196 33.2
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.9e-06 57.4 50 58.0
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.5e-06 57.0 159 29.6
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 3.3e-06 56.6 201 30.3
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 3.3e-06 56.6 186 29.0
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.6e-06 55.8 82 40.2
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 7.4e-06 55.5 127 34.6
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 9.6e-06 55.1 146 28.8


User provided reference genes

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