Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2114 Acer truncatum HOM05D000454 ORTHO05D002637 1.4e-88 330.5 305 100.0
Atru.chr7.2100 Acer truncatum HOM05D000454 ORTHO05D002637 1.1e-80 304.3 290 99.7
Atru.chr7.2112 Acer truncatum HOM05D000454 ORTHO05D002637 6.4e-70 268.5 290 92.8
Ciclev10007796m.g Citrus clementina HOM05D000454 ORTHO05D002637 4.2e-53 212.6 290 83.8
Potri.018G042200 Populus trichocarpa HOM05D000454 ORTHO05D002637 1.4e-48 197.6 290 79.3
Sabra18G0042900 Salix brachista HOM05D000454 ORTHO05D002637 1.0e-46 191.4 291 79.7
TWI34G0381 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 1.0e-46 191.4 290 80.0
TAR383G0435 Trochodendron aralioides HOM05D000454 ORTHO05D002637 1.9e-45 187.2 290 79.0
Dinv14254 Davidia involucrata HOM05D000454 ORTHO05D002637 5.7e-42 175.6 290 77.6
COL.COLO4_18654 Corchorus olitorius HOM05D000454 ORTHO05D002637 7.4e-42 175.3 292 76.4
Duzib168G0801 Durio zibethinus HOM05D000454 ORTHO05D002637 6.9e-40 168.7 290 75.9
HanXRQChr11g0352041 Helianthus annuus HOM05D000454 ORTHO05D002637 1.1e-37 161.4 290 68.3
Lsat_1_v5_gn_1_47140 Lactuca sativa HOM05D000454 ORTHO05D002637 3.2e-37 159.8 290 73.4
Manes.16G072800 Manihot esculenta HOM05D000454 ORTHO05D002637 2.1e-36 157.1 294 68.0
Aqoxy7G01501 Aquilegia oxysepala HOM05D000454 ORTHO05D002637 4.6e-36 156.0 290 68.6
Nn3g18151 Nelumbo nucifera HOM05D000454 ORTHO05D002637 3.9e-35 152.9 290 73.8
THA.LOC104799197 Tarenaya hassleriana HOM05D000454 ORTHO05D002637 6.7e-35 152.1 299 72.9
Oeu031552.2 Olea europaea HOM05D000454 ORTHO05D002637 7.4e-34 148.7 288 73.6
Lj8C577G8 Lonicera japonica HOM05D000454 ORTHO05D002637 1.3e-33 147.9 289 74.4
MBI04_g02615_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 2.4e-32 143.7 285 73.0
PGSC0003DMG400004315 Solanum tuberosum HOM05D000454 ORTHO05D002637 3.1e-32 143.3 297 68.0
DCAR_007717 Daucus carota HOM05D000454 ORTHO05D002637 6.9e-32 142.1 295 74.6
GSVIVG01035638001 Vitis vinifera HOM05D000454 ORTHO05D002637 1.5e-31 141.0 304 60.9
Sopen08g020740 Solanum pennellii HOM05D000454 ORTHO05D002637 1.9e-29 134.0 298 67.4
Solyc08g066770.3 Solanum lycopersicum HOM05D000454 ORTHO05D002637 2.1e-28 130.6 295 67.5
TAR636G2176 Trochodendron aralioides HOM05D000454 ORTHO05D002637 2.1e-28 130.6 284 73.2
TAR626G1687 Trochodendron aralioides HOM05D000454 ORTHO05D002637 3.6e-28 129.8 284 72.9
Nn3g18158 Nelumbo nucifera HOM05D000454 ORTHO05D002637 4.7e-28 129.4 287 71.8
Sopen08g020730 Solanum pennellii HOM05D000454 ORTHO05D002637 5.2e-27 125.9 296 66.6
Lj8C577G4 Lonicera japonica HOM05D000454 ORTHO05D002637 2.8e-25 120.2 290 69.7
Lj8C586G6 Lonicera japonica HOM05D000454 ORTHO05D002637 2.8e-25 120.2 290 69.3
GSVIVG01035671001 Vitis vinifera HOM05D000454 ORTHO05D002637 1.8e-24 117.5 269 73.2
Oeu012195.1 Olea europaea HOM05D000454 ORTHO05D002637 2.6e-23 113.6 287 65.2
Lj8C587G6 Lonicera japonica HOM05D000454 ORTHO05D002637 4.5e-23 112.8 171 66.7
ATR0315G145 Amborella trichopoda HOM05D000454 ORTHO05D002637 6.5e-22 109.0 275 69.1
MBI18_g43125_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 1.9e-21 107.5 286 61.9
PGSC0003DMG400012067 Solanum tuberosum HOM05D000454 ORTHO05D002637 1.6e-20 104.4 294 57.8
Ciclev10007811m.g Citrus clementina HOM05D000454 ORTHO05D002637 8.8e-19 98.6 72 62.5
Solyc08g066760.4 Solanum lycopersicum HOM05D000454 ORTHO05D002637 2.6e-18 97.1 292 44.9
QL05p020771 Quercus lobata HOM05D000454 ORTHO05D002637 9.7e-18 95.1 175 34.3
Atru.chr1.3491 Acer truncatum HOM05D000454 ORTHO05D002637 1.7e-17 94.4 175 60.0
Nitab4.5_0000151g0410 Nicotiana tabacum HOM05D000454 ORTHO05D002637 2.8e-17 93.6 291 66.0
Cpa.g.sc7.265 Carica papaya HOM05D000454 ORTHO05D002637 3.7e-17 93.2 73 60.3
Prupe.3G062200 Prunus persica HOM05D000454 ORTHO05D002637 3.7e-17 93.2 298 47.0
Thecc.09G043600 Theobroma cacao HOM05D000454 ORTHO05D002637 1.1e-16 91.7 71 62.0
Dinv30455 Davidia involucrata HOM05D000454 ORTHO05D002637 5.3e-16 89.4 174 58.6
MBI04_g02616_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 5.3e-16 89.4 73 54.8
Peaxi162Scf00161g00121 Petunia axillaris HOM05D000454 ORTHO05D002637 1.6e-15 87.8 292 65.8
Nitab4.5_0000837g0120 Nicotiana tabacum HOM05D000454 ORTHO05D002637 3.5e-15 86.7 71 56.3
RcHm_v2.0_Chr2g0140011 Rosa chinensis HOM05D000454 ORTHO05D002637 5.9e-15 85.9 287 42.9
Prupe.3G061800 Prunus persica HOM05D000454 ORTHO05D002637 3.8e-14 83.2 284 56.3
RcHm_v2.0_Chr2g0139951 Rosa chinensis HOM05D000454 ORTHO05D002637 5.0e-14 82.8 288 55.2
Haze_15818 Corylus avellana HOM05D000454 ORTHO05D002637 2.5e-13 80.5 72 48.6
Cfa003673 Carpinus fangiana HOM05D000454 ORTHO05D002637 3.2e-13 80.1 73 47.9
Thecc.06G097000 Theobroma cacao HOM05D000454 ORTHO05D002637 4.2e-13 79.7 174 57.5
Cpa.g.sc56.53 Carica papaya HOM05D000454 ORTHO05D002637 7.2e-13 79.0 174 54.0
ECA248G1005 Erigeron canadensis HOM05D000454 ORTHO05D002637 7.2e-13 79.0 67 53.7
PGSC0003DMG400004320 Solanum tuberosum HOM05D000454 ORTHO05D030671 1.2e-12 78.2 154 66.9
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 2.1e-12 77.4 73 50.7
FAN14G2323 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.7e-12 77.0 291 41.2
CiPaw.01G233200 Carya illinoinensis HOM05D000454 ORTHO05D002637 6.1e-12 75.9 71 46.5
FvH4_6g32123 Fragaria vesca HOM05D000454 ORTHO05D002637 6.1e-12 75.9 287 41.5
Cpa.g.sc7.266 Carica papaya HOM05D000454 ORTHO05D002637 8.0e-12 75.5 140 72.9
PGSC0003DMG400004319 Solanum tuberosum HOM05D000454 ORTHO05D002637 1.0e-11 75.1 68 54.4
Potri.001G187600 Populus trichocarpa HOM05D000454 ORTHO05D002637 1.4e-11 74.7 289 54.3
Prupe.3G061900 Prunus persica HOM05D000454 ORTHO05D002637 3.0e-11 73.6 71 45.1
COL.COLO4_30480 Corchorus olitorius HOM05D000454 ORTHO05D002637 5.2e-11 72.8 73 49.3
RcHm_v2.0_Chr2g0139911 Rosa chinensis HOM05D000454 ORTHO05D002637 5.2e-11 72.8 73 43.8
FAN05G3697 Fragaria x ananassa HOM05D000454 ORTHO05D002637 6.8e-11 72.4 173 55.5
SalBow4G0286 Salvia bowleyana HOM05D000454 ORTHO05D002637 8.8e-11 72.0 74 45.9
CiPaw.02G147100 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.2e-10 71.6 73 43.8
FAN05G3019 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.2e-10 71.6 73 46.6
PSO782G3005 Papaver somniferum HOM05D000454 ORTHO05D002637 1.5e-10 71.2 46 67.4
CANSAT56G0237 Cannabis sativa HOM05D000454 ORTHO05D002637 2.0e-10 70.9 166 28.9
Thecc.06G096900 Theobroma cacao HOM05D000454 ORTHO05D002637 2.6e-10 70.5 71 50.7
Hma1.2p1_0659F.1_g197390 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 3.4e-10 70.1 316 55.1
RcHm_v2.0_Chr2g0139771 Rosa chinensis HOM05D000454 ORTHO05D002637 4.4e-10 69.7 73 45.2
Hma1.2p1_1056F.1_g252690 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 5.7e-10 69.3 71 45.1
FAN14G0896 Fragaria x ananassa HOM05D000454 ORTHO05D002637 9.8e-10 68.6 167 54.5
MD17G1186800 Malus domestica HOM05D000454 ORTHO05D002637 9.8e-10 68.6 69 44.9
FvH4_6g32100 Fragaria vesca HOM05D000454 ORTHO05D002637 1.3e-09 68.2 73 45.2
FAN14G0706 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.3e-09 68.2 73 45.2
Manes.04G132001 Manihot esculenta HOM05D000454 ORTHO05D002637 1.3e-09 68.2 175 53.7
ATR0705G094 Amborella trichopoda HOM05D000454 ORTHO05D002637 2.2e-09 67.4 73 45.2
QL05p020680 Quercus lobata HOM05D000454 ORTHO05D002637 2.2e-09 67.4 71 42.3
RcHm_v2.0_Chr1g0353591 Rosa chinensis HOM05D000454 ORTHO05D002637 2.2e-09 67.4 73 45.2
RcHm_v2.0_Chr2g0140001 Rosa chinensis HOM05D000454 ORTHO05D002637 2.2e-09 67.4 287 56.1
Cfa012703 Carpinus fangiana HOM05D000454 ORTHO05D002637 2.8e-09 67.0 201 47.3
FvH4_6g32121 Fragaria vesca HOM05D000454 ORTHO05D002637 2.8e-09 67.0 73 41.1
PSO566G0187 Papaver somniferum HOM05D000454 ORTHO05D002637 2.8e-09 67.0 44 63.6
Prupe.3G062400 Prunus persica HOM05D000454 ORTHO05D002637 2.8e-09 67.0 174 54.0
FAN09G2279 Fragaria x ananassa HOM05D000454 ORTHO05D002637 3.7e-09 66.6 73 39.7
arahy.Tifrunner.gnm1.ann1.A9YK01 Arachis hypogaea HOM05D000454 ORTHO05D002637 8.3e-09 65.5 73 38.4
arahy.Tifrunner.gnm1.ann1.N3KGB9 Arachis hypogaea HOM05D000454 ORTHO05D002637 8.3e-09 65.5 73 38.4
Lj8A587G30 Lonicera japonica HOM05D000454 ORTHO05D002637 8.3e-09 65.5 45 66.7
Atru.chr1.3486 Acer truncatum HOM05D000454 ORTHO05D002637 1.1e-08 65.1 53 50.9
QL05p020655 Quercus lobata HOM05D000454 ORTHO05D002637 1.1e-08 65.1 70 40.0
Medtr2g101310 Medicago truncatula HOM05D000454 ORTHO05D002637 1.8e-08 64.3 72 40.3
QL05p020750 Quercus lobata HOM05D000454 ORTHO05D002637 1.8e-08 64.3 70 40.0
TPR.G27663 Trifolium pratense HOM05D000454 ORTHO05D002637 2.4e-08 63.9 71 40.8
CiPaw.01G233300 Carya illinoinensis HOM05D000454 ORTHO05D002637 3.1e-08 63.5 72 37.5
Peaxi162Scf00161g00126 Petunia axillaris HOM05D000454 ORTHO05D002637 4.1e-08 63.2 138 70.3
arahy.Tifrunner.gnm1.ann1.VK618R Arachis hypogaea HOM05D000454 ORTHO05D002637 5.4e-08 62.8 72 37.5
Medtr2g101320 Medicago truncatula HOM05D000454 ORTHO05D002637 5.4e-08 62.8 71 40.8
RcHm_v2.0_Chr2g0139761 Rosa chinensis HOM05D000454 ORTHO05D002637 5.4e-08 62.8 71 42.3
Peaxi162Scf01379g00001 Petunia axillaris HOM05D000264 ORTHO05D002637 9.1e-08 62.0 45 64.4
ATR0705G165 Amborella trichopoda HOM05D000480 ORTHO05D000313 1.2e-07 61.6 69 43.5
QL05p020689 Quercus lobata HOM05D000454 ORTHO05D002637 1.2e-07 61.6 70 38.6
QL05p020802 Quercus lobata HOM05D000454 ORTHO05D002637 1.2e-07 61.6 68 39.7
CiPaw.01G233400 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.6e-07 61.2 70 37.1
Ciclev10025077m.g Citrus clementina HOM05D000454 ORTHO05D002637 1.6e-07 61.2 69 47.8
Sed0021062 Sechium edule HOM05D000454 ORTHO05D002637 1.6e-07 61.2 73 37.0
arahy.Tifrunner.gnm1.ann1.2M4JN6 Arachis hypogaea HOM05D000454 ORTHO05D002637 2.0e-07 60.8 71 36.6
Lj8A605G12 Lonicera japonica HOM05D000454 ORTHO05D002637 2.0e-07 60.8 44 63.6
Duzib192G1039 Durio zibethinus HOM05D000454 ORTHO05D002637 7.7e-07 58.9 173 27.7
FvH4_6g32091 Fragaria vesca HOM05D000454 ORTHO05D002637 7.7e-07 58.9 71 39.4
FAN14G5147 Fragaria x ananassa HOM05D000454 ORTHO05D002637 7.7e-07 58.9 71 39.4
PGR102G3036 Punica granatum HOM05D000454 ORTHO05D002637 7.7e-07 58.9 71 43.7
Lj3g0015079 Lotus japonicus HOM05D000454 ORTHO05D002637 1.0e-06 58.5 71 38.0
MELO3C024269.2 Cucumis melo HOM05D000454 ORTHO05D002637 1.7e-06 57.8 72 44.4
Phvul.005G167300 Phaseolus vulgaris HOM05D000454 ORTHO05D002637 1.7e-06 57.8 73 32.9
Sed0022178 Sechium edule HOM05D000454 ORTHO05D002637 2.3e-06 57.4 169 52.7
Sc12g0009600 Simmondsia chinensis HOM05D000454 ORTHO05D002637 2.3e-06 57.4 172 25.0
Glyma.15G018600 Glycine max HOM05D000454 ORTHO05D002637 2.9e-06 57.0 70 35.7
Sp2g30100 Schrenkiella parvula HOM05D000454 ORTHO05D002637 3.8e-06 56.6 75 38.7
SEGI_23263 Sequoiadendron giganteum HOM05D000454 ORTHO05D002637 3.8e-06 56.6 289 59.2
Duzib177G0874 Durio zibethinus HOM05D000264 ORTHO05D000152 6.5e-06 55.8 73 35.6
Lsat_1_v5_gn_4_101061 Lactuca sativa HOM05D000454 ORTHO05D002637 6.5e-06 55.8 72 36.1
CsaV3_7G033580 Cucumis sativus L. HOM05D000454 ORTHO05D002637 8.6e-06 55.5 72 43.1
VMungo1080G0542 Vigna mungo HOM05D000454 ORTHO05D002637 8.6e-06 55.5 73 34.2


User provided reference genes

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