Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2105 Acer truncatum HOM05D000814 ORTHO05D001161 3.1e-44 181.4 92 100.0
Atru.chr7.2121 Acer truncatum HOM05D000814 ORTHO05D001161 1.0e-39 166.4 84 100.0
Potri.018G042000 Populus trichocarpa HOM05D000814 ORTHO05D001161 3.1e-20 101.7 82 68.3
Sabra18G0041400 Salix brachista HOM05D000814 ORTHO05D001161 7.0e-20 100.5 83 66.3
Sabra18G0042700 Salix brachista HOM05D000814 ORTHO05D001161 9.1e-20 100.1 88 63.6
Thecc.09G043200 Theobroma cacao HOM05D000814 ORTHO05D001161 3.5e-19 98.2 84 65.5
QL12p029143 Quercus lobata HOM05D000814 ORTHO05D001161 4.5e-19 97.8 79 63.3
Ciclev10008414m.g Citrus clementina HOM05D000814 ORTHO05D001161 7.7e-19 97.1 83 68.7
Sabra06G0187500 Salix brachista HOM05D000814 ORTHO05D001161 1.3e-18 96.3 82 63.4
Duzib168G0186 Durio zibethinus HOM05D000814 ORTHO05D001161 1.1e-17 93.2 86 60.5
Duzib187G0870 Durio zibethinus HOM05D000814 ORTHO05D001161 2.5e-17 92.0 91 62.6
Manes.03G062200 Manihot esculenta HOM05D000814 ORTHO05D001161 4.7e-16 87.8 82 58.5
MELO3C003460.2 Cucumis melo HOM05D000814 ORTHO05D001161 1.0e-15 86.7 83 55.4
CsaV3_3G048590 Cucumis sativus L. HOM05D000814 ORTHO05D001161 1.8e-15 85.9 83 55.4
TAR624G0788 Trochodendron aralioides HOM05D000814 ORTHO05D001161 1.8e-15 85.9 67 67.2
Gohir.D05G049200 Gossypium hirsutum HOM05D000814 ORTHO05D001161 4.0e-15 84.7 90 54.4
Gorai.009G050400 Gossypium raimondii HOM05D000814 ORTHO05D001161 4.0e-15 84.7 90 54.4
vmacro11065 Vaccinium macrocarpon HOM05D000814 ORTHO05D001161 4.0e-15 84.7 82 61.0
AUR62009299 Chenopodium quinoa HOM05D000814 ORTHO05D001161 6.8e-15 84.0 55 76.4
Sed0007357 Sechium edule HOM05D000814 ORTHO05D001161 6.8e-15 84.0 83 54.2
ClCG11G015180 Citrullus lanatus HOM05D000814 ORTHO05D001161 1.5e-14 82.8 83 54.2
Gohir.A05G047300 Gossypium hirsutum HOM05D000814 ORTHO05D001161 1.5e-14 82.8 90 53.3
Lj7C703G6 Lonicera japonica HOM05D000814 ORTHO05D001161 1.5e-14 82.8 62 67.7
Dinv30279 Davidia involucrata HOM05D000814 ORTHO05D001161 2.0e-14 82.4 86 55.8
AUR62041713 Chenopodium quinoa HOM05D000814 ORTHO05D001161 2.6e-14 82.0 55 74.5
Hund19521 Selenicereus undatus HOM05D000814 ORTHO05D001161 2.6e-14 82.0 108 44.4
TWI63G1296 Tripterygium wilfordii HOM05D000814 ORTHO05D001161 3.4e-14 81.6 82 58.5
PGR031G1946 Punica granatum HOM05D000814 ORTHO05D001161 4.4e-14 81.3 88 56.8
Prupe.1G449700 Prunus persica HOM05D000814 ORTHO05D001161 5.7e-14 80.9 61 72.1
EL10Ac2g04035 Beta vulgaris HOM05D000814 ORTHO05D001161 1.7e-13 79.3 54 74.1
Ah.16g105660 Amaranthus hybridus HOM05D000814 ORTHO05D001161 2.2e-13 79.0 54 72.2
Actinidia13328 Actinidia chinensis HOM05D000814 ORTHO05D001161 2.8e-13 78.6 79 57.0
MBI01_g06183_MAGBIO Magnolia biondii HOM05D000814 ORTHO05D001161 3.7e-13 78.2 77 57.1
RcHm_v2.0_Chr6g0306061 Rosa chinensis HOM05D000814 ORTHO05D001161 3.7e-13 78.2 83 62.7
FvH4_2g35720 Fragaria vesca HOM05D000814 ORTHO05D001161 4.9e-13 77.8 61 72.1
FAN15G1574 Fragaria x ananassa HOM05D000411 ORTHO05D001161 4.9e-13 77.8 61 72.1
FAN20G1959 Fragaria x ananassa HOM05D000411 ORTHO05D001161 4.9e-13 77.8 61 72.1
FAN27G1541 Fragaria x ananassa HOM05D000814 ORTHO05D001161 4.9e-13 77.8 61 72.1
Glyma.04G083000 Glycine max HOM05D000814 ORTHO05D001161 6.3e-13 77.4 55 69.1
MD15G1094600 Malus domestica HOM05D000814 ORTHO05D001161 8.3e-13 77.0 84 59.5
CAN.G335.3 Capsicum annuum HOM05D000814 ORTHO05D001161 1.1e-12 76.6 81 53.1
Phvul.009G108600 Phaseolus vulgaris HOM05D000814 ORTHO05D001161 1.1e-12 76.6 84 53.6
Rhsim02G0179300 Rhododendron simsii HOM05D000814 ORTHO05D001161 1.4e-12 76.3 56 69.6
VMungo1309G2296 Vigna mungo HOM05D000814 ORTHO05D001161 1.8e-12 75.9 83 54.2
GSVIVG01035642001 Vitis vinifera HOM05D000814 ORTHO05D001161 1.8e-12 75.9 86 58.1
Cc08_g09390 Coffea canephora HOM05D000814 ORTHO05D001161 5.4e-12 74.3 66 59.1
Nitab4.5_0000837g0030 Nicotiana tabacum HOM05D000814 ORTHO05D001161 7.0e-12 73.9 82 53.7
Solyc08g066860.2 Solanum lycopersicum HOM05D000814 ORTHO05D001161 9.2e-12 73.6 81 53.1
SalBow4G0770 Salvia bowleyana HOM05D000814 ORTHO05D001161 1.6e-11 72.8 95 44.2
Sopen08g020840 Solanum pennellii HOM05D000814 ORTHO05D001161 2.0e-11 72.4 82 52.4
Nitab4.5_0000151g0320 Nicotiana tabacum HOM05D000814 ORTHO05D001161 4.5e-11 71.2 81 53.1
PGSC0003DMG400009605 Solanum tuberosum HOM05D000814 ORTHO05D001161 7.8e-11 70.5 75 53.3
Sc09g0009130 Simmondsia chinensis HOM05D000814 ORTHO05D001161 1.3e-10 69.7 51 66.7
Lalb_Chr08g0243131 Lupinus albus HOM05D000814 ORTHO05D001161 1.7e-10 69.3 83 50.6
Nn3g18147 Nelumbo nucifera HOM05D000814 ORTHO05D001161 2.3e-10 68.9 66 57.6
arahy.Tifrunner.gnm1.ann1.HTI7FU Arachis hypogaea HOM05D000814 ORTHO05D001161 3.8e-10 68.2 47 74.5
arahy.Tifrunner.gnm1.ann1.YHN668 Arachis hypogaea HOM05D000814 ORTHO05D001161 3.8e-10 68.2 47 74.5
Ca_15602_v3 Cicer arietinum L. HOM05D000411 ORTHO05D000310 3.8e-10 68.2 51 68.6
Peaxi162Scf00161g00511 Petunia axillaris HOM05D000814 ORTHO05D001161 3.8e-10 68.2 81 53.1
ATR0315G031 Amborella trichopoda HOM05D000814 ORTHO05D001161 6.6e-10 67.4 90 44.4
Lsat_1_v5_gn_6_63860 Lactuca sativa HOM05D000814 ORTHO05D001161 1.5e-09 66.2 55 60.0
SGA_v2.0_scaffold103G29946 Striga asiatica HOM05D000814 ORTHO05D001161 1.9e-09 65.9 49 69.4
ECA233G5302 Erigeron canadensis HOM05D000814 ORTHO05D001161 3.3e-09 65.1 85 45.9
Eucgr.C00587 Eucalyptus grandis HOM05D000814 ORTHO05D001161 3.3e-09 65.1 57 61.4
CiPaw.07G205100 Carya illinoinensis HOM05D000814 ORTHO05D001161 5.6e-09 64.3 54 64.8
CANSAT25G1950 Cannabis sativa HOM05D000814 ORTHO05D001161 9.5e-09 63.5 86 51.2
BcaC09g52074 Brassica carinata HOM05D000814 ORTHO05D001161 2.1e-08 62.4 55 58.2
TPR.G1352 Trifolium pratense HOM05D000814 ORTHO05D001161 2.8e-08 62.0 82 47.6
A01p05510 Brassica napus HOM05D000814 ORTHO05D001161 3.6e-08 61.6 55 58.2
C01p06120 Brassica napus HOM05D000814 ORTHO05D001161 3.6e-08 61.6 55 58.2
BolC1t00609H Brassica oleracea HOM05D000814 ORTHO05D001161 3.6e-08 61.6 55 58.2
BraA01t00523Z Brassica rapa HOM05D000814 ORTHO05D001161 3.6e-08 61.6 55 58.2
Lj1g0022815 Lotus japonicus HOM05D000814 ORTHO05D001161 4.7e-08 61.2 83 50.6
Medtr3g110182 Medicago truncatula HOM05D000814 ORTHO05D001161 4.7e-08 61.2 51 66.7
CARHR240770 Cardamine hirsuta HOM05D000814 ORTHO05D001161 8.0e-08 60.5 55 56.4
Zm00001eb119220 Zea mays HOM05D000814 ORTHO05D001161 8.0e-08 60.5 49 65.3
AL7G18960 Arabidopsis lyrata HOM05D000814 ORTHO05D001161 1.0e-07 60.1 55 56.4
HPP92_023901 Vanilla planifolia HOM05D000814 ORTHO05D001161 1.4e-07 59.7 49 65.3
AT4G32780 Arabidopsis thaliana HOM05D000814 ORTHO05D001161 2.3e-07 58.9 55 56.4
Thhalv10025284m.g Eutrema salsugineum HOM05D000814 ORTHO05D001161 3.0e-07 58.5 55 54.5
Carub.0007s0771 Capsella rubella HOM05D000814 ORTHO05D001161 4.0e-07 58.2 57 54.4
HanXRQChr12g0380011 Helianthus annuus HOM05D000814 ORTHO05D001161 4.0e-07 58.2 80 48.8
Sp7g30540 Schrenkiella parvula HOM05D000814 ORTHO05D001161 5.2e-07 57.8 88 40.9
Nn6g33916 Nelumbo nucifera HOM05D000814 ORTHO05D005211 1.2e-06 56.6 49 61.2
Cpa.g.sc29.175 Carica papaya HOM05D000814 ORTHO05D005211 2.0e-06 55.8 69 49.3
TWI60G1470 Tripterygium wilfordii HOM05D000814 ORTHO05D005211 4.4e-06 54.7 91 42.9
BraA08t33133Z Brassica rapa HOM05D000814 ORTHO05D001161 5.7e-06 54.3 40 67.5
TAR365G1177 Trochodendron aralioides HOM05D000814 ORTHO05D001161 5.7e-06 54.3 46 54.3
TAR375G0084 Trochodendron aralioides HOM05D000814 ORTHO05D005211 5.7e-06 54.3 40 65.0
SEGI_32936 Sequoiadendron giganteum HOM05D000814 ORTHO05D001161 7.5e-06 53.9 50 60.0
BcaC09g50150 Brassica carinata HOM05D000814 ORTHO05D001161 9.8e-06 53.5 41 63.4
A01p22870 Brassica napus HOM05D000814 ORTHO05D001161 9.8e-06 53.5 41 63.4
C01p28530 Brassica napus HOM05D000814 ORTHO05D001161 9.8e-06 53.5 41 63.4
BolC1t02774H Brassica oleracea HOM05D000814 ORTHO05D001161 9.8e-06 53.5 41 63.4
BraA01t02201Z Brassica rapa HOM05D000814 ORTHO05D001161 9.8e-06 53.5 41 63.4
Thhalv10025120m.g Eutrema salsugineum HOM05D000814 ORTHO05D001161 9.8e-06 53.5 41 63.4
Sp7g12850 Schrenkiella parvula HOM05D000814 ORTHO05D001161 9.8e-06 53.5 41 63.4
PGSC0003DMG400006453 Solanum tuberosum HOM05D000814 ORTHO05D001161 9.8e-06 53.5 65 49.2


User provided reference genes

Program Settings