Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 6.1e-43 177.2 96 100.0
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 2.5e-28 128.6 96 77.1
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 9.5e-28 126.7 96 77.1
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 2.1e-27 125.6 96 72.9
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 6.2e-27 124.0 96 75.0
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 4.0e-26 121.3 96 74.0
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 1.2e-25 119.8 96 72.9
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 9.8e-25 116.7 96 72.9
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 9.8e-25 116.7 96 70.8
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.3e-24 116.3 97 73.2
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 2.2e-24 115.5 85 80.0
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 3.7e-24 114.8 96 68.8
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 8.3e-24 113.6 96 69.8
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 8.3e-24 113.6 96 68.8
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 3.2e-23 111.7 96 69.8
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 3.2e-23 111.7 96 69.8
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 5.4e-23 110.9 96 69.8
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 5.4e-23 110.9 96 69.8
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 1.2e-22 109.8 96 68.8
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.2e-22 109.8 85 75.3
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 2.1e-22 109.0 96 65.6
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 2.1e-22 109.0 96 68.8
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 3.5e-22 108.2 97 70.1
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 4.6e-22 107.8 85 75.3
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 6.0e-22 107.5 96 64.6
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 6.0e-22 107.5 96 68.8
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 6.0e-22 107.5 96 64.6
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 7.8e-22 107.1 96 64.6
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.0e-21 106.7 96 65.6
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 1.7e-21 105.9 96 63.5
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.7e-21 105.9 87 72.4
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 1.7e-21 105.9 96 67.7
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 1.7e-21 105.9 96 67.7
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 2.3e-21 105.5 96 63.5
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 2.3e-21 105.5 98 65.3
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 3.0e-21 105.1 96 64.6
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 5.1e-21 104.4 96 63.5
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 5.1e-21 104.4 96 63.5
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 6.6e-21 104.0 96 65.6
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 8.6e-21 103.6 96 63.5
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 8.6e-21 103.6 99 64.6
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 1.5e-20 102.8 96 61.5
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 1.5e-20 102.8 96 61.5
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 1.5e-20 102.8 96 61.5
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 1.5e-20 102.8 96 61.5
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 1.5e-20 102.8 96 61.5
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 1.5e-20 102.8 96 64.6
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.9e-20 102.4 96 62.5
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.9e-20 102.4 96 62.5
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 1.9e-20 102.4 87 71.3
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 2.5e-20 102.1 101 63.4
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.3e-20 101.7 98 63.3
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 3.3e-20 101.7 101 62.4
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 4.3e-20 101.3 96 65.6
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 4.3e-20 101.3 96 66.7
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 4.3e-20 101.3 96 66.7
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 9.5e-20 100.1 96 61.5
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 1.2e-19 99.8 120 55.0
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.6e-19 99.4 101 62.4
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 2.8e-19 98.6 99 60.6
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 3.6e-19 98.2 96 67.7
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 4.7e-19 97.8 96 62.5
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 6.2e-19 97.4 86 70.9
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 8.1e-19 97.1 96 62.5
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 8.1e-19 97.1 96 64.6
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 2.3e-18 95.5 96 66.7
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.1e-18 95.1 85 68.2
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 6.8e-18 94.0 96 61.5
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 2.6e-17 92.0 99 60.6
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 2.6e-17 92.0 85 68.2
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 5.8e-17 90.9 85 64.7
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 7.6e-17 90.5 120 50.8
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.3e-16 89.7 80 70.0
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 1.7e-16 89.4 85 63.5
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.2e-16 89.0 90 66.7
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 6.4e-16 87.4 87 64.4
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.1e-15 86.7 87 64.4
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 1.1e-15 86.7 131 48.9
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.4e-15 86.3 85 61.2
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 1.4e-15 86.3 85 60.0
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 1.4e-15 86.3 85 60.0
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 1.9e-15 85.9 85 65.9
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 1.9e-15 85.9 87 58.6
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 4.1e-15 84.7 97 56.7
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 7.1e-15 84.0 96 59.4
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 9.2e-15 83.6 96 57.3
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 9.2e-15 83.6 85 62.4
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 1.2e-14 83.2 51 80.4
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.6e-14 82.8 51 82.4
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 3.5e-14 81.6 76 63.2
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.5e-14 81.6 85 62.4
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 3.5e-14 81.6 77 63.6
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 4.6e-14 81.3 96 54.2
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 6.0e-14 80.9 87 58.6
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 1.0e-13 80.1 90 60.0
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.7e-13 79.3 85 56.5
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 5.1e-13 77.8 97 55.7
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.1e-12 76.6 51 80.4
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 5.6e-12 74.3 98 54.1
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 9.6e-12 73.6 77 63.6
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 1.1e-10 70.1 102 47.1
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 2.4e-10 68.9 50 72.0
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 6.8e-10 67.4 96 46.9
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 8.9e-10 67.0 88 51.1
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 4.4e-09 64.7 91 46.2
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 4.4e-09 64.7 104 44.2
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 4.4e-09 64.7 67 56.7
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 4.4e-09 64.7 92 50.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 5.8e-09 64.3 64 56.2
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 5.8e-09 64.3 64 56.2
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 7.6e-09 63.9 99 44.4
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 1.3e-08 63.2 107 43.0
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 1.3e-08 63.2 103 42.7
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.7e-08 62.8 92 48.9
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.2e-08 62.4 96 50.0
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.2e-08 62.4 103 42.7
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 2.9e-08 62.0 77 50.6
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 2.9e-08 62.0 99 44.4
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 2.9e-08 62.0 99 44.4
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 3.8e-08 61.6 103 43.7
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 4.9e-08 61.2 100 44.0
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.9e-08 61.2 95 45.3
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 4.9e-08 61.2 103 45.6
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 6.4e-08 60.8 103 42.7
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 8.4e-08 60.5 88 47.7
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 8.4e-08 60.5 86 51.2
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 8.4e-08 60.5 96 39.6
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 1.4e-07 59.7 103 42.7
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 1.4e-07 59.7 103 42.7
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 1.4e-07 59.7 96 43.8
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.9e-07 59.3 101 46.5
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.9e-07 59.3 86 48.8
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.9e-07 59.3 86 48.8
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 2.4e-07 58.9 55 56.4
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 2.4e-07 58.9 103 42.7
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 3.2e-07 58.5 102 40.2
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 3.2e-07 58.5 90 44.4
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 3.2e-07 58.5 99 44.4
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 5.4e-07 57.8 56 58.9
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 9.3e-07 57.0 97 45.4
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 9.3e-07 57.0 105 41.9
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.2e-06 56.6 105 42.9
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.2e-06 56.6 99 44.4
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.6e-06 56.2 96 41.7
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 1.6e-06 56.2 92 41.3
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 2.1e-06 55.8 82 48.8
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.1e-06 55.8 98 42.9
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 2.7e-06 55.5 99 42.4
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 2.7e-06 55.5 99 43.4
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.5e-06 55.1 101 44.6
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 3.5e-06 55.1 43 67.4
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 3.5e-06 55.1 81 44.4
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 3.5e-06 55.1 89 44.9
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 3.5e-06 55.1 95 43.2
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 3.5e-06 55.1 111 40.5
HPP92_009091 Vanilla planifolia HOM05D007429 ORTHO05D003505 4.6e-06 54.7 58 63.8
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 6.0e-06 54.3 53 58.5
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 6.0e-06 54.3 53 58.5
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 6.0e-06 54.3 47 63.8
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 6.0e-06 54.3 47 63.8
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 6.0e-06 54.3 93 47.3
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 7.8e-06 53.9 111 41.4
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 7.8e-06 53.9 99 42.4
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 7.8e-06 53.9 84 44.0


User provided reference genes

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