Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 1.8e-134 482.6 250 100.0
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 1.9e-88 329.7 216 75.5
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 3.6e-87 325.5 218 72.9
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 5.2e-86 321.6 238 70.2
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 4.4e-85 318.5 220 73.2
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 9.9e-85 317.4 218 73.4
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 3.8e-84 315.5 219 73.1
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 1.1e-83 313.9 239 66.9
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 1.2e-82 310.5 218 72.9
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 5.1e-81 305.1 218 71.1
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 6.6e-81 304.7 239 66.5
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 8.7e-81 304.3 218 68.3
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 1.9e-80 303.1 218 68.3
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 4.3e-80 302.0 220 69.5
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 1.3e-79 300.4 218 68.3
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 3.6e-79 298.9 239 66.1
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 4.8e-79 298.5 218 68.3
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 1.4e-78 297.0 236 64.4
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 1.8e-78 296.6 217 68.2
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 5.3e-78 295.0 289 58.5
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 6.9e-78 294.7 218 68.3
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 6.9e-78 294.7 219 68.9
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 3.4e-77 292.4 218 67.4
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 7.6e-77 291.2 242 66.5
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 3.8e-76 288.9 218 67.0
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 8.4e-76 287.7 197 74.1
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 8.4e-76 287.7 241 61.8
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 4.2e-75 285.4 218 67.4
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 4.2e-75 285.4 218 66.1
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 4.2e-75 285.4 218 67.4
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 4.2e-75 285.4 236 61.4
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 5.4e-75 285.0 218 68.3
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 1.2e-74 283.9 218 67.0
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 1.2e-74 283.9 218 66.1
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 3.5e-74 282.3 218 67.4
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 6.0e-74 281.6 197 72.1
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 1.3e-73 280.4 217 59.4
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 1.3e-73 280.4 217 59.4
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 1.3e-73 280.4 217 59.4
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 1.8e-73 280.0 217 59.9
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 1.8e-73 280.0 217 59.9
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 3.9e-73 278.9 239 61.5
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 3.9e-73 278.9 212 61.8
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 6.7e-73 278.1 212 62.7
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 1.5e-72 276.9 217 60.4
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 3.3e-72 275.8 218 65.1
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 3.3e-72 275.8 218 62.4
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 7.4e-72 274.6 217 65.0
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 1.6e-71 273.5 238 59.7
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 4.8e-71 271.9 217 59.4
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 4.8e-71 271.9 239 59.0
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 8.1e-71 271.2 239 61.9
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 3.1e-70 269.2 208 65.4
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.0e-70 268.9 236 59.7
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 6.9e-70 268.1 212 59.4
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 9.0e-70 267.7 215 58.6
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 1.2e-69 267.3 218 60.6
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 2.0e-69 266.5 259 57.9
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 4.5e-69 265.4 239 61.9
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 5.8e-69 265.0 210 63.3
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.3e-68 263.8 197 66.0
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 1.7e-68 263.5 212 58.5
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 1.7e-68 263.5 212 58.5
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.7e-68 263.5 236 59.3
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 2.9e-68 262.7 232 58.6
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.9e-68 261.9 236 58.9
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 6.4e-68 261.5 198 68.2
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 8.4e-68 261.2 238 58.8
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 8.4e-68 261.2 248 56.9
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.1e-67 260.8 197 65.5
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 5.5e-67 258.5 238 53.8
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 1.6e-66 256.9 218 61.0
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 2.1e-66 256.5 189 63.0
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 2.7e-66 256.1 240 57.9
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 3.5e-66 255.8 212 58.5
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 4.6e-66 255.4 240 57.5
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 7.9e-66 254.6 238 55.0
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 1.3e-65 253.8 248 56.5
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 1.3e-65 253.8 199 65.8
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 1.8e-65 253.4 212 57.5
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 2.3e-65 253.1 222 58.6
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 1.1e-64 250.8 239 55.6
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 1.5e-64 250.4 214 60.3
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 3.3e-64 249.2 171 74.3
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 3.3e-64 249.2 239 55.2
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 2.1e-63 246.5 200 61.0
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 1.1e-62 244.2 196 59.7
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 9.0e-62 241.1 189 64.0
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 9.0e-62 241.1 189 63.5
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 3.8e-60 235.7 207 61.4
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 4.6e-58 228.8 208 59.6
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 7.9e-58 228.0 219 57.1
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 6.3e-55 218.4 170 61.8
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 3.1e-54 216.1 192 54.7
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 1.0e-52 211.1 199 57.3
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 2.2e-52 209.9 149 66.4
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 5.0e-52 208.8 186 58.1
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 1.1e-51 207.6 218 53.7
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 7.4e-48 194.9 282 44.0
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 3.2e-43 179.5 132 66.7
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 9.4e-43 177.9 215 47.0
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 7.9e-42 174.9 136 68.4
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 2.2e-36 156.8 110 71.8
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.4e-33 147.5 109 65.1
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.4e-33 147.5 109 65.1
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 1.5e-32 144.1 192 43.8
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 2.1e-26 123.6 89 66.3
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 3.0e-25 119.8 206 36.9
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 2.0e-24 117.1 127 50.4
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 1.3e-20 104.4 129 48.1
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 1.0e-17 94.7 198 28.3
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 1.2e-16 91.3 62 72.6
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 1.6e-13 80.9 144 34.0
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 2.1e-10 70.5 173 28.9
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 1.7e-07 60.8 64 46.9
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 2.2e-07 60.5 121 32.2
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.1e-06 58.2 65 49.2


User provided reference genes

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