Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 6.5e-85 317.4 165 100.0
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 4.7e-59 231.5 185 67.6
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 8.0e-59 230.7 185 69.7
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.2e-57 226.9 187 68.4
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 2.6e-57 225.7 187 65.8
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 1.3e-56 223.4 189 65.6
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.3e-56 223.4 185 65.9
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 6.4e-56 221.1 188 64.9
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.9e-55 219.5 186 65.1
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.6e-54 216.5 186 64.5
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.0e-54 216.1 185 65.4
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 2.0e-54 216.1 190 63.2
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 6.0e-54 214.5 191 63.9
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.3e-53 213.4 183 62.8
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 5.0e-53 211.5 186 62.9
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 4.3e-52 208.4 190 63.2
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 7.3e-52 207.6 188 62.8
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 7.3e-52 207.6 186 61.8
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.6e-51 206.5 191 61.3
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.6e-51 206.5 186 61.3
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.1e-51 206.1 188 61.2
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 3.6e-51 205.3 186 62.4
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.1e-50 203.8 193 60.1
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 1.8e-50 203.0 191 61.3
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.8e-50 203.0 186 60.8
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.3e-50 202.6 195 60.0
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 3.1e-50 202.2 190 61.1
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.1e-50 202.2 181 64.6
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 5.2e-50 201.4 192 60.4
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 5.2e-50 201.4 189 60.3
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.2e-49 200.3 193 58.0
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 4.4e-49 198.4 197 57.4
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 7.5e-49 197.6 189 60.8
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 7.5e-49 197.6 181 63.5
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 2.9e-48 195.7 191 60.2
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 3.7e-48 195.3 178 61.2
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 8.3e-48 194.1 198 56.6
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 4.1e-47 191.8 198 57.6
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 4.1e-47 191.8 186 59.1
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 4.1e-47 191.8 186 59.1
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 5.4e-47 191.4 191 54.5
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 7.1e-47 191.0 197 55.3
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 7.1e-47 191.0 178 60.7
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 7.1e-47 191.0 195 56.4
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 9.2e-47 190.7 209 51.7
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 9.2e-47 190.7 178 60.1
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 9.2e-47 190.7 185 58.4
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 9.2e-47 190.7 196 55.6
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 4.6e-46 188.3 178 59.6
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 6.0e-46 188.0 194 56.2
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.0e-46 188.0 185 58.4
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 7.8e-46 187.6 186 58.6
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 1.0e-45 187.2 194 55.7
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 2.3e-45 186.0 195 54.4
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 6.6e-45 184.5 127 74.0
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 8.6e-45 184.1 185 57.3
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.1e-44 183.7 187 55.6
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.5e-44 183.3 190 57.4
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.5e-44 183.3 117 76.1
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.5e-44 183.3 185 56.8
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 1.9e-44 183.0 199 54.3
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 3.3e-44 182.2 191 57.6
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 7.3e-44 181.0 199 53.8
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 7.3e-44 181.0 199 53.8
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 7.3e-44 181.0 188 56.4
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 7.3e-44 181.0 192 54.7
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 9.5e-44 180.6 197 54.3
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 9.5e-44 180.6 178 59.0
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 9.5e-44 180.6 186 57.0
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 1.6e-43 179.9 195 53.3
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.6e-43 179.9 202 54.0
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.6e-43 179.9 187 54.0
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 2.1e-43 179.5 196 53.1
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 2.1e-43 179.5 197 54.3
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 2.1e-43 179.5 196 53.1
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 2.1e-43 179.5 196 55.1
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 2.8e-43 179.1 196 55.1
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 2.8e-43 179.1 186 56.5
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.8e-43 179.1 188 56.4
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.7e-43 178.3 229 46.3
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 6.2e-43 177.9 205 52.7
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 3.1e-42 175.6 198 54.0
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 4.0e-42 175.3 187 55.6
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 4.0e-42 175.3 111 73.9
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 5.2e-42 174.9 193 55.4
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 6.8e-42 174.5 173 59.5
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.5e-41 173.3 251 42.6
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.0e-41 172.9 187 53.5
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.3e-40 170.2 183 53.6
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 2.9e-40 169.1 196 52.0
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.9e-40 169.1 178 57.3
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 8.4e-40 167.5 191 54.5
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 3.2e-39 165.6 199 51.3
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 4.1e-39 165.2 190 52.6
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 7.1e-39 164.5 184 52.2
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.6e-38 163.3 193 52.3
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 2.7e-38 162.5 203 51.7
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 4.6e-38 161.8 217 46.5
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 7.8e-38 161.0 178 53.9
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.3e-37 160.2 127 66.1
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.7e-37 159.8 117 68.4
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 6.6e-37 157.9 202 51.0
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 8.6e-37 157.5 129 65.9
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 1.9e-36 156.4 129 66.7
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 4.3e-36 155.2 155 57.4
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 4.3e-36 155.2 159 57.9
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 5.6e-36 154.8 119 68.1
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 1.2e-35 153.7 244 43.0
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 2.1e-35 152.9 129 65.9
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 3.6e-35 152.1 189 47.6
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 4.7e-35 151.8 93 79.6
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 8.1e-35 151.0 109 72.5
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 4.0e-34 148.7 171 53.2
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 4.0e-34 148.7 180 51.7
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.2e-33 147.1 188 48.4
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 2.0e-33 146.4 129 62.0
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.6e-33 146.0 194 45.9
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 5.8e-33 144.8 204 46.1
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.3e-32 143.7 117 59.0
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 6.4e-32 141.4 204 46.6
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.9e-31 139.8 190 45.8
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 3.9e-29 132.1 151 53.6
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 3.9e-29 132.1 89 78.7
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.1e-29 131.7 122 53.3
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 5.1e-29 131.7 194 42.8
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 8.7e-29 131.0 110 61.8
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 1.1e-28 130.6 170 47.6
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 7.3e-28 127.9 167 50.3
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 9.6e-28 127.5 129 51.9
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 9.6e-28 127.5 129 51.9
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 9.6e-28 127.5 129 51.9
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 1.6e-27 126.7 192 43.2
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.8e-27 125.2 119 52.1
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 1.5e-25 120.2 136 54.4
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.2e-23 112.1 145 51.0
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 6.7e-21 104.8 200 40.5
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.5e-20 102.8 121 52.9
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 3.3e-20 102.4 114 48.2
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.5e-17 92.0 82 58.5
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.5e-17 92.0 110 45.5
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 8.4e-16 87.8 62 74.2
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 8.4e-16 87.8 110 44.5
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 1.3e-11 73.9 64 64.1


User provided reference genes

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