Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.1e-136 490.0 255 100.0
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.1e-83 313.9 253 67.6
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 5.2e-81 305.1 265 65.3
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 9.1e-78 294.3 259 64.1
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.3e-76 290.4 253 64.8
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.1e-75 287.3 253 64.4
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 3.3e-75 285.8 253 63.6
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 4.2e-75 285.4 253 63.6
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 6.1e-74 281.6 256 61.7
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 2.2e-71 273.1 266 60.2
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 6.3e-71 271.6 257 62.3
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 6.3e-71 271.6 259 61.8
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.2e-69 267.3 253 60.5
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 5.9e-69 265.0 259 61.0
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.9e-69 265.0 276 58.3
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.1e-67 260.8 252 61.9
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 1.5e-67 260.4 258 60.1
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.9e-67 260.0 258 59.3
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.9e-67 260.0 251 62.2
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 4.3e-67 258.8 271 59.4
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 5.6e-67 258.5 257 59.9
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 5.6e-67 258.5 259 58.7
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 9.5e-67 257.7 259 58.7
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.2e-66 257.3 261 55.9
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 6.1e-66 255.0 260 58.5
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.0e-65 254.2 258 58.9
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.4e-65 253.8 259 58.3
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.7e-63 245.7 227 63.0
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.1e-62 244.2 259 58.7
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 9.2e-62 241.1 209 64.6
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 1.0e-60 237.7 259 54.8
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.7e-60 236.9 260 55.0
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 5.0e-60 235.3 269 55.0
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 6.6e-60 235.0 266 54.9
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 1.9e-59 233.4 264 54.2
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.9e-59 233.4 280 52.1
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 7.3e-59 231.5 257 54.5
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 2.8e-58 229.6 270 54.1
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 4.7e-58 228.8 253 54.5
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 8.9e-57 224.6 321 47.0
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 4.4e-56 222.2 262 52.3
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 5.8e-56 221.9 256 53.9
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 7.5e-56 221.5 257 53.7
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 9.8e-56 221.1 254 53.9
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.3e-55 220.7 259 53.7
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 2.2e-55 219.9 262 53.1
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 3.7e-55 219.2 265 53.2
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.7e-55 219.2 265 51.7
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 4.9e-55 218.8 256 53.1
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.1e-54 217.6 263 51.3
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.1e-54 217.6 264 51.1
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.1e-54 217.6 249 52.2
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 2.4e-54 216.5 248 54.4
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.1e-54 215.7 264 51.1
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 7.1e-54 214.9 261 49.4
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.2e-53 214.2 261 52.1
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.1e-53 213.4 257 53.7
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 6.0e-53 211.8 264 50.8
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 6.0e-53 211.8 264 50.8
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.0e-53 211.8 265 50.9
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 7.8e-53 211.5 264 50.8
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 1.0e-52 211.1 260 50.0
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.7e-52 210.3 272 51.1
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.7e-52 210.3 253 53.0
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.7e-52 210.3 268 51.9
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.3e-52 209.9 259 47.5
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.3e-52 209.9 265 50.9
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 3.9e-52 209.1 251 53.8
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 5.1e-52 208.8 265 47.9
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 6.6e-52 208.4 253 48.6
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 6.6e-52 208.4 191 63.4
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.1e-51 207.6 256 50.0
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 1.1e-51 207.6 243 53.5
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 1.1e-51 207.6 266 50.8
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.3e-51 206.1 247 52.6
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 5.6e-51 205.3 272 50.0
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 5.6e-51 205.3 252 50.4
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 5.6e-51 205.3 252 50.4
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 7.3e-51 204.9 244 51.2
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.2e-50 204.1 266 50.8
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.2e-50 204.1 254 50.0
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.6e-50 203.8 261 47.1
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.6e-50 203.8 244 50.8
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.8e-50 203.0 180 62.2
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.8e-50 203.0 244 51.2
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 3.6e-50 202.6 234 51.7
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 6.2e-50 201.8 245 50.6
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 8.1e-50 201.4 257 49.8
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 8.1e-50 201.4 253 47.0
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 1.1e-49 201.1 259 48.6
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.1e-49 201.1 252 50.8
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.8e-49 200.3 276 48.6
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 1.8e-49 200.3 259 52.1
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 5.2e-49 198.7 252 50.0
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 2.0e-48 196.8 260 48.5
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 2.6e-48 196.4 256 48.0
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 5.8e-48 195.3 252 50.4
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 5.8e-48 195.3 168 63.1
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 7.6e-48 194.9 259 50.6
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 2.2e-47 193.4 265 48.3
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 2.9e-47 193.0 256 46.9
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 1.9e-46 190.3 255 48.2
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.6e-45 187.2 374 39.6
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 3.5e-45 186.0 272 46.3
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 6.0e-45 185.3 254 48.0
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.8e-45 184.9 265 47.9
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.3e-44 184.1 272 45.6
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 3.9e-44 182.6 251 47.4
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 6.6e-44 181.8 261 45.2
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 1.1e-43 181.0 251 45.0
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.1e-43 181.0 283 44.2
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.1e-41 172.9 292 42.1
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 6.8e-41 171.8 255 44.7
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 6.8e-41 171.8 269 44.2
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 3.4e-40 169.5 174 55.2
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.4e-40 169.1 252 44.4
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 4.9e-39 165.6 252 42.1
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.1e-38 164.5 152 59.2
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 4.2e-38 162.5 200 47.5
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 5.4e-38 162.2 174 50.6
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.6e-37 160.6 247 45.3
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 3.9e-36 156.0 245 43.7
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 8.7e-36 154.8 262 42.7
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 4.0e-33 146.0 271 39.1
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.2e-31 140.2 259 41.7
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 2.4e-30 136.7 193 44.6
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 4.2e-30 136.0 365 33.7
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 2.7e-29 133.3 148 52.0
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 5.6e-27 125.6 251 35.9
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 2.8e-26 123.2 137 52.6
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 3.1e-25 119.8 142 50.7
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 9.0e-25 118.2 163 49.1
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.5e-24 117.5 125 58.4
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.5e-21 106.3 137 46.7
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 3.7e-18 96.3 139 47.5
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.1e-17 94.7 128 50.8
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.4e-17 94.4 154 37.0
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.8e-17 94.0 219 36.1
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 4.0e-17 92.8 146 40.4
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.2e-16 91.3 159 35.8
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 7.6e-16 88.6 67 68.7
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.7e-15 87.4 133 42.1
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 3.2e-14 83.2 160 36.2
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 3.7e-10 69.7 55 63.6
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 4.1e-09 66.2 75 45.3
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 4.1e-09 66.2 75 45.3
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 5.3e-09 65.9 221 33.9
Medtr3g104200 Medicago truncatula HOM05D004579 ORTHO05D005376 9.0e-09 65.1 105 42.9
Medtr3g104160 Medicago truncatula HOM05D004579 ORTHO05D005376 2.6e-08 63.5 84 51.2
arahy.Tifrunner.gnm1.ann1.FCA0JR Arachis hypogaea HOM05D004579 ORTHO05D005376 7.6e-08 62.0 94 46.8
QL03p011519 Quercus lobata HOM05D004579 ORTHO05D005376 1.3e-07 61.2 90 51.1
arahy.Tifrunner.gnm1.ann1.LJH7P1 Arachis hypogaea HOM05D004579 ORTHO05D005376 9.3e-06 55.1 124 37.1


User provided reference genes

Program Settings