Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 0.0e+00 1383.6 718 100.0
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 0.0e+00 1117.8 718 81.8
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 1.0e-296 1023.1 716 75.0
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 1.3e-294 1016.1 718 74.2
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 3.9e-291 1004.6 715 74.8
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 5.6e-290 1000.7 719 72.9
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.9e-285 985.7 716 72.2
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 6.0e-284 980.7 760 69.3
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 7.8e-284 980.3 719 72.3
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 7.8e-284 980.3 715 73.1
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 6.6e-283 977.2 721 72.3
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 1.6e-281 972.6 718 72.3
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 1.6e-281 972.6 716 72.2
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 4.7e-281 971.1 692 73.3
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 7.6e-279 963.8 717 71.5
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.2e-278 962.2 718 71.6
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 1.4e-277 959.5 724 70.2
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.6e-276 956.1 718 71.2
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 3.5e-276 954.9 721 70.7
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 7.3e-274 947.2 716 69.8
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 9.6e-274 946.8 721 68.7
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 1.6e-273 946.0 718 69.6
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 8.1e-273 943.7 689 72.3
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 2.4e-272 942.2 705 71.3
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 3.1e-272 941.8 709 69.7
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 3.1e-272 941.8 718 69.9
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 6.8e-272 940.6 718 69.9
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 2.0e-271 939.1 718 69.2
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 4.4e-271 937.9 718 69.1
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 3.8e-270 934.9 718 69.2
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 5.1e-267 924.5 718 67.7
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 3.6e-265 918.3 719 68.6
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 8.1e-265 917.1 718 67.4
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 3.1e-264 915.2 720 66.8
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 4.4e-263 911.4 715 67.0
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.3e-262 909.8 722 66.6
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 1.3e-262 909.8 718 67.7
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 2.2e-262 909.1 712 68.3
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.9e-261 906.0 726 66.3
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 3.2e-261 905.2 832 60.8
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 2.7e-260 902.1 712 67.7
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 4.6e-260 901.4 719 66.3
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 7.4e-258 894.0 653 72.1
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 2.1e-257 892.5 723 65.4
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 5.3e-256 887.9 717 67.8
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 9.0e-256 887.1 718 66.2
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 4.5e-255 884.8 718 66.0
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 6.4e-254 880.9 718 65.7
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 1.1e-253 880.2 717 66.5
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 2.7e-252 875.5 700 68.0
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 1.1e-250 870.2 719 66.1
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 4.8e-249 864.8 717 66.1
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 1.4e-248 863.2 713 65.9
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 5.3e-248 861.3 715 64.1
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 6.9e-248 860.9 721 64.9
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 2.0e-247 859.4 721 64.8
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 4.5e-247 858.2 721 64.6
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 1.1e-245 853.6 710 64.1
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 7.1e-245 850.9 721 64.1
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 1.2e-244 850.1 747 61.4
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 6.0e-244 847.8 719 64.7
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 2.5e-242 842.4 717 64.4
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 1.9e-237 826.2 720 62.4
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 2.4e-232 809.3 708 61.4
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 1.8e-227 793.1 720 59.3
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 2.3e-227 792.7 720 59.2
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.1e-226 790.4 721 61.2
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 1.3e-225 786.9 720 59.9
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 4.5e-223 778.5 655 63.7
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 1.0e-222 777.3 717 59.6
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.7e-222 776.5 719 58.7
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 1.1e-221 773.9 719 59.2
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 1.1e-221 773.9 708 59.6
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 2.5e-221 772.7 719 60.5
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 3.2e-221 772.3 655 62.9
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 9.4e-221 770.8 867 52.0
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 1.2e-220 770.4 707 59.3
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 2.1e-220 769.6 711 57.9
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 2.7e-220 769.2 718 59.3
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 5.2e-219 765.0 711 58.2
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 1.5e-218 763.5 718 58.9
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 2.0e-218 763.1 655 64.3
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 5.7e-218 761.5 718 58.8
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 9.7e-218 760.8 711 57.7
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 1.3e-217 760.4 720 58.8
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.8e-216 756.5 722 58.6
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.3e-214 750.4 719 59.2
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 1.1e-213 747.3 714 57.7
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 1.9e-213 746.5 711 57.2
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 9.4e-213 744.2 714 57.7
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 9.4e-213 744.2 716 58.2
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 9.4e-213 744.2 716 57.8
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 1.6e-212 743.4 712 57.2
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 2.1e-212 743.0 717 55.9
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 8.0e-212 741.1 601 66.2
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.2e-210 737.3 706 58.8
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 2.2e-209 733.0 720 58.1
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 4.8e-209 731.9 717 56.2
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.1e-208 730.7 724 57.9
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 1.3e-206 723.8 719 56.7
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 4.2e-205 718.8 754 54.4
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 5.5e-205 718.4 715 56.1
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 1.6e-204 716.8 709 57.4
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 2.3e-203 713.0 715 55.5
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 4.0e-203 712.2 702 57.0
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 4.4e-202 708.8 715 55.1
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 6.3e-201 704.9 642 58.7
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 1.4e-200 703.7 715 55.0
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 1.4e-200 703.7 715 54.8
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 2.1e-196 689.9 715 54.1
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 3.0e-195 686.0 714 53.1
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 1.2e-194 684.1 708 54.7
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 2.6e-194 682.9 641 58.3
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 7.5e-194 681.4 717 55.5
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 2.7e-191 672.9 710 53.7
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 2.7e-191 672.9 787 51.8
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 5.0e-190 668.7 715 53.3
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 6.6e-190 668.3 716 52.9
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 1.5e-189 667.2 715 55.0
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 3.3e-189 666.0 686 55.0
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 1.1e-184 651.0 722 52.8
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 1.4e-184 650.6 715 52.6
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 2.7e-183 646.4 723 53.4
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 5.0e-182 642.1 724 53.6
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 7.3e-181 638.3 716 53.2
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 9.5e-181 637.9 638 56.4
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 8.0e-180 634.8 715 52.0
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 1.4e-176 624.0 710 50.7
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 2.5e-173 613.2 711 51.9
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 6.8e-171 605.1 538 64.3
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 1.7e-161 573.9 700 48.9
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 2.3e-150 537.0 740 45.7
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 1.5e-149 534.3 717 44.5
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 1.1e-147 528.1 716 46.2
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 2.9e-145 520.0 707 44.4
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 1.1e-144 518.1 716 43.0
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 1.1e-141 508.1 682 49.3
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.2e-135 488.0 439 59.2
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 4.0e-131 473.0 715 41.8
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 1.5e-130 471.1 676 46.0
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 3.4e-130 469.9 462 57.4
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 1.3e-129 468.0 458 57.9
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 1.6e-127 461.1 745 40.4
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 5.7e-117 426.0 435 55.4
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 3.6e-111 406.8 468 48.9
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 3.0e-110 403.7 731 37.3
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 2.8e-108 397.1 721 37.6
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 5.5e-104 382.9 714 37.3
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 8.8e-86 322.4 758 34.3
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-73 281.6 671 32.6
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.3e-60 238.8 378 44.4
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 5.8e-53 213.4 193 56.0
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 2.3e-49 201.4 321 43.3
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 7.3e-48 196.4 125 73.6
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 8.1e-47 193.0 165 58.8
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 2.4e-43 181.4 205 54.1
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 3.2e-43 181.0 305 38.0
BolC4t25898H Brassica oleracea HOM05D003622 ORTHO05D004453 1.4e-38 165.6 198 50.5
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 3.1e-38 164.5 238 45.0
A04p09720 Brassica napus HOM05D003622 ORTHO05D004453 1.8e-25 122.1 143 51.0
Haze_25503 Corylus avellana HOM05D003622 ORTHO05D004453 5.3e-22 110.5 65 83.1
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 5.3e-22 110.5 153 41.8
BraA04t16634Z Brassica rapa HOM05D003622 ORTHO05D004453 9.0e-22 109.8 102 54.9
MBI13_g36805_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.2e-21 109.4 141 52.5
ClCG06G011520 Citrullus lanatus HOM05D003622 ORTHO05D004453 3.4e-21 107.8 69 75.4
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.4e-19 102.4 114 51.8
HPP92_000472 Vanilla planifolia HOM05D003622 ORTHO05D004453 5.5e-19 100.5 153 47.1
C04p43210 Brassica napus HOM05D003622 ORTHO05D004453 7.1e-19 100.1 74 59.5
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 7.9e-18 96.7 65 72.3
SEGI_22443 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 3.7e-15 87.8 67 59.7
SHI22468 Sapria himalayana HOM05D003622 ORTHO05D004453 3.1e-14 84.7 64 65.6
Sabra10G0016400 Salix brachista HOM05D003622 ORTHO05D004453 6.9e-14 83.6 60 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2257 Anthoceros agrestis HOM05D003622 ORTHO05D004453 9.0e-14 83.2 86 46.5
Oeu042754.1 Olea europaea HOM05D003622 ORTHO05D004453 1.3e-07 62.8 40 70.0
MBI13_g36809_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D240810 8.2e-07 60.1 47 51.1


User provided reference genes

Program Settings