Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1889 Acer truncatum HOM05D004621 ORTHO05D005817 1.1e-148 530.0 279 100.0
Atru.chr7.1917 Acer truncatum HOM05D004621 ORTHO05D005817 2.3e-74 283.1 162 94.4
Atru.chr7.1890 Acer truncatum HOM05D004621 ORTHO05D005817 1.1e-55 221.1 511 38.6
Atru.chr7.1918 Acer truncatum HOM05D004621 ORTHO05D005817 1.1e-55 221.1 511 38.6
TWI32G0723 Tripterygium wilfordii HOM05D004621 ORTHO05D005817 2.0e-22 110.5 121 61.2
Thecc.09G059300 Theobroma cacao HOM05D004621 ORTHO05D005817 2.3e-21 107.1 112 61.6
Ciclev10010180m.g Citrus clementina HOM05D004621 ORTHO05D005817 3.0e-21 106.7 120 57.5
Manes.16G083500 Manihot esculenta HOM05D004621 ORTHO05D005817 8.6e-21 105.1 120 53.3
Hma1.2p1_0231F.1_g097600 Hydrangea macrophylla HOM05D004621 ORTHO05D005817 1.9e-20 104.0 124 56.5
Nitab4.5_0009148g0020 Nicotiana tabacum HOM05D004621 ORTHO05D005817 2.5e-20 103.6 111 55.0
Lsat_1_v5_gn_5_78680 Lactuca sativa HOM05D004621 ORTHO05D005817 3.3e-20 103.2 131 50.4
Nitab4.5_0000286g0110 Nicotiana tabacum HOM05D004621 ORTHO05D005817 3.3e-20 103.2 111 55.0
CANSAT21G1762 Cannabis sativa HOM05D004621 ORTHO05D005817 4.3e-20 102.8 160 47.5
COL.COLO4_21108 Corchorus olitorius HOM05D004621 ORTHO05D005817 4.3e-20 102.8 112 58.0
Dinv12464 Davidia involucrata HOM05D004621 ORTHO05D005817 4.3e-20 102.8 120 55.8
Hma1.2p1_0196F.1_g084950 Hydrangea macrophylla HOM05D004621 ORTHO05D005817 5.6e-20 102.4 125 54.4
Gohir.A05G040100 Gossypium hirsutum HOM05D004621 ORTHO05D005817 9.5e-20 101.7 112 57.1
Gohir.D05G041600 Gossypium hirsutum HOM05D004621 ORTHO05D005817 9.5e-20 101.7 112 57.1
Gorai.009G042200 Gossypium raimondii HOM05D004621 ORTHO05D005817 9.5e-20 101.7 112 57.1
Cfa017997 Carpinus fangiana HOM05D004621 ORTHO05D005817 1.2e-19 101.3 105 56.2
Haze_18137 Corylus avellana HOM05D004621 ORTHO05D005817 1.6e-19 100.9 105 56.2
Lj8A495T43 Lonicera japonica HOM05D004621 ORTHO05D005817 1.6e-19 100.9 118 54.2
Rhsim05G0135500 Rhododendron simsii HOM05D004621 ORTHO05D005817 2.1e-19 100.5 110 55.5
TPR.G3533 Trifolium pratense HOM05D004621 ORTHO05D005817 2.1e-19 100.5 103 58.3
Duzib168G0020 Durio zibethinus HOM05D004621 ORTHO05D005817 3.6e-19 99.8 112 57.1
Psat5g035360 Pisum sativum HOM05D004621 ORTHO05D005817 6.2e-19 99.0 112 54.5
Sabra06G0173000 Salix brachista HOM05D004621 ORTHO05D005817 6.2e-19 99.0 118 52.5
Ah.10g034040 Amaranthus hybridus HOM05D004621 ORTHO05D005817 8.1e-19 98.6 98 59.2
EL10Ac2g03807 Beta vulgaris HOM05D004621 ORTHO05D005817 8.1e-19 98.6 120 49.2
Sed0025089 Sechium edule HOM05D004621 ORTHO05D005817 8.1e-19 98.6 111 54.1
ClCG05G018120 Citrullus lanatus HOM05D004621 ORTHO05D005817 1.4e-18 97.8 138 47.1
CsaV3_4G035890 Cucumis sativus L. HOM05D004621 ORTHO05D005817 1.4e-18 97.8 111 55.0
Eucgr.C00676 Eucalyptus grandis HOM05D004621 ORTHO05D005817 1.4e-18 97.8 126 46.8
Medtr3g104760 Medicago truncatula HOM05D004621 ORTHO05D005817 1.4e-18 97.8 112 53.6
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.4e-18 97.8 120 51.7
ECA234G1492 Erigeron canadensis HOM05D004621 ORTHO05D005817 1.8e-18 97.4 100 56.0
HanXRQChr10g0309801 Helianthus annuus HOM05D004621 ORTHO05D005817 1.8e-18 97.4 114 52.6
Lj8A491T35 Lonicera japonica HOM05D004621 ORTHO05D005817 1.8e-18 97.4 96 60.4
PGSC0003DMG400008208 Solanum tuberosum HOM05D004621 ORTHO05D005817 1.8e-18 97.4 112 52.7
unitig_88.g27672 Utricularia gibba HOM05D004621 ORTHO05D005817 1.8e-18 97.4 102 54.9
Sc09g0009980 Simmondsia chinensis HOM05D004621 ORTHO05D005817 2.3e-18 97.1 101 55.4
MELO3C016896.2 Cucumis melo HOM05D004621 ORTHO05D005817 3.1e-18 96.7 105 55.2
MBI05_g23629_MAGBIO Magnolia biondii HOM05D004621 ORTHO05D005817 3.1e-18 96.7 115 48.7
Peaxi162Scf01253g00025 Petunia axillaris HOM05D004621 ORTHO05D005817 3.1e-18 96.7 110 52.7
Cpa.g.sc126.50 Carica papaya HOM05D004621 ORTHO05D005817 4.0e-18 96.3 108 53.7
FAN24G3059 Fragaria x ananassa HOM05D004621 ORTHO05D005817 4.0e-18 96.3 127 48.8
SalBow4G1696 Salvia bowleyana HOM05D004621 ORTHO05D005817 4.0e-18 96.3 120 51.7
GSVIVG01035427001 Vitis vinifera HOM05D004621 ORTHO05D005817 4.0e-18 96.3 120 52.5
MD15G1053900 Malus domestica HOM05D004621 ORTHO05D005817 5.2e-18 95.9 110 51.8
Prupe.1G407400 Prunus persica HOM05D004621 ORTHO05D005817 5.2e-18 95.9 109 54.1
PGR031G3863 Punica granatum HOM05D004621 ORTHO05D005817 5.2e-18 95.9 112 53.6
Potri.006G224000 Populus trichocarpa HOM05D004621 ORTHO05D005817 8.9e-18 95.1 103 54.4
arahy.Tifrunner.gnm1.ann1.I8I12Q Arachis hypogaea HOM05D004621 ORTHO05D005817 1.5e-17 94.4 96 59.4
arahy.Tifrunner.gnm1.ann1.T7L0BR Arachis hypogaea HOM05D004621 ORTHO05D005817 1.5e-17 94.4 96 59.4
Ca_15845_v3 Cicer arietinum L. HOM05D004621 ORTHO05D005817 1.5e-17 94.4 96 58.3
FvH4_2g31380 Fragaria vesca HOM05D004621 ORTHO05D005817 1.5e-17 94.4 116 50.9
Solyc08g062560.4 Solanum lycopersicum HOM05D004621 ORTHO05D005817 2.0e-17 94.0 105 53.3
Sopen08g017990 Solanum pennellii HOM05D004621 ORTHO05D005817 2.0e-17 94.0 120 50.8
RcHm_v2.0_Chr6g0311441 Rosa chinensis HOM05D004621 ORTHO05D005817 2.6e-17 93.6 116 50.0
Hund19431 Selenicereus undatus HOM05D004621 ORTHO05D005817 3.4e-17 93.2 125 49.6
QL02p000390 Quercus lobata HOM05D004621 ORTHO05D005817 5.8e-17 92.4 107 53.3
SGA_v2.0_scaffold20G09183 Striga asiatica HOM05D004621 ORTHO05D005817 5.8e-17 92.4 120 50.0
Glyma.06G054600 Glycine max HOM05D004621 ORTHO05D005817 9.9e-17 91.7 97 54.6
VMungo1309G3014 Vigna mungo HOM05D004621 ORTHO05D005817 9.9e-17 91.7 97 55.7
Aqoxy2G03981 Aquilegia oxysepala HOM05D004621 ORTHO05D005817 1.3e-16 91.3 97 56.7
FAN20G0813 Fragaria x ananassa HOM05D004621 ORTHO05D005817 1.3e-16 91.3 116 49.1
Phvul.009G080100 Phaseolus vulgaris HOM05D004621 ORTHO05D005817 2.2e-16 90.5 134 47.0
PSO210G1875 Papaver somniferum HOM05D004621 ORTHO05D005817 2.9e-16 90.1 104 51.9
PSO210G2988 Papaver somniferum HOM05D004621 ORTHO05D005817 2.9e-16 90.1 104 51.9
FAN15G0359 Fragaria x ananassa HOM05D004621 ORTHO05D005817 3.7e-16 89.7 116 48.3
Lalb_Chr11g0063251 Lupinus albus HOM05D004621 ORTHO05D005817 3.7e-16 89.7 97 51.5
HPP92_023989 Vanilla planifolia HOM05D004621 ORTHO05D005817 3.7e-16 89.7 95 57.9
Lj1g0023758 Lotus japonicus HOM05D004621 ORTHO05D005817 4.9e-16 89.4 97 51.5
FAN27G1750 Fragaria x ananassa HOM05D004621 ORTHO05D005817 6.4e-16 89.0 116 48.3
vmacro19714 Vaccinium macrocarpon HOM05D004621 ORTHO05D005817 6.4e-16 89.0 68 69.1
Cc08_g11070 Coffea canephora HOM05D004621 ORTHO05D005817 8.3e-16 88.6 140 43.6
Migut.A00101 Erythranthe guttata HOM05D004621 ORTHO05D005817 8.3e-16 88.6 108 51.9
Glyma.04G054300 Glycine max HOM05D004621 ORTHO05D005817 8.3e-16 88.6 97 52.6
Nn6g35569 Nelumbo nucifera HOM05D004621 ORTHO05D005817 8.3e-16 88.6 106 51.9
AUR62009103 Chenopodium quinoa HOM05D004621 ORTHO05D005817 1.1e-15 88.2 100 52.0
AUR62020569 Chenopodium quinoa HOM05D004621 ORTHO05D005817 1.1e-15 88.2 100 52.0
Oeu018033.1 Olea europaea HOM05D004621 ORTHO05D005817 1.1e-15 88.2 150 43.3
FAN17G2977 Fragaria x ananassa HOM05D004621 ORTHO05D005817 1.4e-15 87.8 105 50.5
HPP92_023996 Vanilla planifolia HOM05D004621 ORTHO05D005817 1.4e-15 87.8 95 56.8
THA.LOC104811228 Tarenaya hassleriana HOM05D004621 ORTHO05D005817 2.4e-15 87.0 112 49.1
DCAR_007741 Daucus carota HOM05D004621 ORTHO05D005817 3.2e-15 86.7 117 50.4
ATR0051G016 Amborella trichopoda HOM05D004621 ORTHO05D005817 9.2e-15 85.1 104 49.0
Sp2g21560 Schrenkiella parvula HOM05D004621 ORTHO05D005817 9.2e-15 85.1 112 49.1
Thhalv10004076m.g Eutrema salsugineum HOM05D004621 ORTHO05D005817 1.6e-14 84.3 98 54.1
AL6G38190 Arabidopsis lyrata HOM05D004621 ORTHO05D005817 2.1e-14 84.0 98 53.1
Aa31LG1G21020 Aethionema arabicum HOM05D004621 ORTHO05D005817 2.7e-14 83.6 98 52.0
MSTRG.25978 Avicennia marina HOM05D004621 ORTHO05D005817 3.5e-14 83.2 120 47.5
CSS0016381 Camellia sinensis var. sinensis HOM05D004621 ORTHO05D005817 6.0e-14 82.4 101 50.5
Carub.0006s2397 Capsella rubella HOM05D004621 ORTHO05D005817 6.0e-14 82.4 124 46.8
BcaC03g17845 Brassica carinata HOM05D004621 ORTHO05D005817 1.0e-13 81.6 112 47.3
C02p58840 Brassica napus HOM05D004621 ORTHO05D005817 1.0e-13 81.6 112 47.3
BolC2t11942H Brassica oleracea HOM05D004621 ORTHO05D005817 1.0e-13 81.6 112 47.3
BcaB07g29951 Brassica carinata HOM05D004621 ORTHO05D005817 1.7e-13 80.9 98 52.0
A02p39240 Brassica napus HOM05D004621 ORTHO05D005817 2.3e-13 80.5 112 47.3
BraA02t08889Z Brassica rapa HOM05D004621 ORTHO05D005817 2.3e-13 80.5 112 47.3
CARHR187480 Cardamine hirsuta HOM05D004621 ORTHO05D005817 3.0e-13 80.1 97 50.5
BcaC04g23605 Brassica carinata HOM05D004621 ORTHO05D005817 3.9e-13 79.7 105 48.6
A09p05980 Brassica napus HOM05D004621 ORTHO05D005817 3.9e-13 79.7 105 48.6
SEGI_04699 Sequoiadendron giganteum HOM05D004621 ORTHO05D005817 3.9e-13 79.7 98 50.0
Os02g0217800 Oryza sativa ssp. japonica HOM05D004621 ORTHO05D005817 5.1e-13 79.3 94 51.1
Zm00001eb240170 Zea mays HOM05D004621 ORTHO05D005817 5.1e-13 79.3 112 45.5
BcaB04g19746 Brassica carinata HOM05D004621 ORTHO05D005817 6.6e-13 79.0 109 47.7
BraA09t36240Z Brassica rapa HOM05D004621 ORTHO05D005817 8.6e-13 78.6 105 47.6
C09p06540 Brassica napus HOM05D004621 ORTHO05D005817 1.1e-12 78.2 105 47.6
BolC9t53577H Brassica oleracea HOM05D004621 ORTHO05D005817 1.5e-12 77.8 105 47.6
SHI18707 Sapria himalayana HOM05D004621 ORTHO05D005817 5.6e-12 75.9 104 43.3
AT5G26180 Arabidopsis thaliana HOM05D004621 ORTHO05D005817 2.8e-11 73.6 92 48.9
BcaB04g19747 Brassica carinata HOM05D004621 ORTHO05D005817 1.3e-08 64.7 81 48.1
BcaB07g29949 Brassica carinata HOM05D004621 ORTHO05D005817 1.1e-07 61.6 109 39.4
AagrBONN_evm.TU.Sc2ySwM_228.3331 Anthoceros agrestis HOM05D004621 ORTHO05D005817 1.6e-06 57.8 86 40.7


User provided reference genes

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