Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 0.0e+00 1302.7 988 100.0
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 3.3e-256 889.0 942 75.3
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.5e-237 827.0 940 66.2
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 3.4e-237 825.9 955 69.4
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 2.0e-229 800.0 1007 69.3
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.6e-229 799.7 984 65.3
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.3e-225 787.3 943 66.5
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.3e-225 787.3 991 68.7
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 6.8e-222 775.0 940 67.1
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 1.2e-221 774.2 983 63.6
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.8e-220 769.2 994 67.1
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 6.4e-220 768.5 960 68.0
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.2e-219 766.1 989 69.8
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.2e-218 764.2 942 68.3
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 2.7e-218 763.1 964 66.8
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 2.3e-217 760.0 945 67.5
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.3e-215 754.2 774 73.3
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.6e-215 753.8 940 62.6
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.5e-213 747.3 943 67.4
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 9.9e-213 744.6 956 66.5
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.1e-210 736.9 774 74.5
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 2.7e-210 736.5 1056 61.6
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.7e-209 733.8 944 57.5
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 3.9e-209 732.6 938 66.8
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 5.1e-209 732.3 938 66.8
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.9e-208 730.3 968 67.7
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.5e-208 729.9 773 76.3
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.3e-208 729.6 954 65.0
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 2.1e-202 710.3 993 57.2
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 7.4e-200 701.8 940 65.6
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.3e-199 701.0 815 67.4
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 8.1e-199 698.4 773 74.4
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.4e-198 697.6 771 75.6
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.1e-198 696.4 771 74.4
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 4.0e-198 696.0 946 64.4
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 4.0e-198 696.0 772 76.7
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.5e-197 694.1 940 60.0
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 2.2e-196 690.3 941 65.0
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 2.9e-196 689.9 955 64.5
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 3.2e-195 686.4 805 75.7
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 3.5e-194 682.9 942 59.4
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 6.0e-194 682.2 869 68.4
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 7.9e-194 681.8 747 78.2
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 8.7e-193 678.3 769 74.3
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 8.7e-193 678.3 774 73.5
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.3e-191 674.5 775 74.5
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.1e-191 673.7 776 74.5
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.1e-190 671.4 801 68.3
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.4e-190 671.0 768 71.5
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 2.4e-190 670.2 781 65.7
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 2.4e-190 670.2 993 62.4
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 3.1e-190 669.8 774 73.9
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.7e-188 664.1 780 73.8
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.4e-187 661.0 790 66.7
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.9e-187 660.6 775 72.1
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 4.2e-187 659.4 817 73.4
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.2e-186 657.9 798 69.9
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.2e-186 657.9 776 74.6
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 2.1e-186 657.1 774 73.3
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 3.6e-186 656.4 772 74.4
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 4.6e-186 656.0 824 73.5
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.3e-185 654.4 741 70.0
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 2.3e-185 653.7 757 72.7
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 3.0e-185 653.3 774 72.2
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 5.1e-185 652.5 857 68.3
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.1e-184 651.4 743 75.8
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.1e-184 651.4 787 71.5
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 1.9e-184 650.6 768 68.9
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 4.3e-184 649.4 772 74.5
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.3e-183 647.9 766 70.2
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 2.4e-182 643.7 766 71.0
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 1.2e-181 641.3 773 72.4
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 1.2e-181 641.3 773 73.1
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-181 641.3 773 72.4
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.2e-181 641.3 773 73.1
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 1.5e-181 641.0 798 69.2
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.0e-180 638.3 943 60.9
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.0e-180 638.3 768 70.4
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.3e-180 637.9 772 71.1
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.7e-180 637.5 801 69.3
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.9e-180 636.7 772 69.2
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.9e-180 636.7 773 69.7
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 8.5e-180 635.2 771 72.6
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 8.5e-180 635.2 771 72.6
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 8.5e-180 635.2 781 69.1
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.1e-179 634.8 786 70.0
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.1e-179 634.8 976 60.8
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.9e-179 634.0 745 64.7
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.2e-178 631.3 743 64.1
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.6e-178 630.9 781 68.9
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 3.6e-178 629.8 722 75.3
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 3.6e-178 629.8 940 61.7
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 4.6e-178 629.4 773 70.0
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 6.1e-178 629.0 808 71.3
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 1.4e-177 627.9 768 68.4
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.1e-176 624.8 807 68.8
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 2.6e-176 623.6 768 68.9
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.3e-175 621.3 1006 51.1
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 1.1e-174 618.2 773 71.8
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.1e-174 618.2 773 70.0
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 1.1e-174 618.2 771 70.3
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 3.1e-174 616.7 789 71.4
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 3.4e-173 613.2 770 71.4
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 5.0e-172 609.4 761 70.0
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 6.5e-172 609.0 773 71.2
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.5e-171 607.1 743 71.7
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 7.2e-171 605.5 753 69.9
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 7.2e-171 605.5 858 67.7
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.2e-170 604.7 751 68.7
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 4.7e-170 602.8 932 61.8
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 6.1e-170 602.4 938 58.6
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.4e-169 601.3 762 70.3
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 3.9e-169 599.7 767 70.8
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 6.7e-169 599.0 724 66.9
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 2.8e-167 593.6 742 64.8
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 9.1e-166 588.6 796 66.6
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 5.5e-163 579.3 815 68.6
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.4e-161 574.7 743 70.0
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 3.7e-159 566.6 818 59.9
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 3.7e-159 566.6 732 69.1
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 4.8e-159 566.2 723 69.4
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.6e-157 561.2 760 61.6
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.6e-157 561.2 760 61.6
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.7e-156 557.8 760 61.6
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.9e-156 557.0 765 61.8
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 4.0e-153 546.6 729 64.1
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.4e-150 538.1 706 68.7
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 4.5e-149 533.1 765 60.8
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.7e-148 531.2 743 64.3
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 4.0e-145 520.0 735 64.2
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.3e-143 515.0 658 65.3
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 4.9e-143 513.1 764 59.6
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 3.1e-142 510.4 603 81.6
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 4.1e-142 510.0 764 59.9
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 4.1e-142 510.0 694 68.7
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 7.7e-141 505.8 765 59.5
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 7.3e-139 499.2 764 59.4
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.6e-136 490.7 737 63.4
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.8e-134 484.6 720 66.2
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 4.1e-134 483.4 772 59.2
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 4.3e-131 473.4 675 61.8
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.4e-128 463.8 655 68.2
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 3.3e-123 447.2 720 46.4
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 3.6e-122 443.7 823 52.1
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.1e-117 427.9 643 61.7
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.9e-116 423.7 839 48.3
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 2.0e-112 411.4 643 61.1
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 9.2e-110 402.5 777 45.6
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.7e-109 401.0 761 56.0
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.5e-99 367.9 602 73.6
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.9e-95 354.4 844 42.9
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.4e-95 353.2 665 55.2
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.2e-93 349.0 358 65.9
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 1.3e-92 345.5 470 66.0
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 6.2e-90 336.7 628 61.6
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.5e-88 332.0 669 54.9
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 2.0e-88 331.6 470 48.9
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.4e-86 324.7 799 34.3
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 4.8e-82 310.5 1224 29.1
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.2e-77 295.8 562 69.4
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 1.4e-73 282.3 439 47.2
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.2e-72 279.3 583 54.5
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 6.1e-61 240.4 192 66.1
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 5.7e-59 233.8 149 78.5
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 3.9e-52 211.1 319 72.1
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.9e-47 194.9 143 65.0
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.2e-46 191.4 339 39.2
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.3e-39 169.5 142 61.3
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 6.5e-39 167.2 115 70.4
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 8.0e-29 133.7 84 78.6
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 3.0e-28 131.7 119 58.8
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 3.4e-27 128.3 88 72.7
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 3.6e-21 108.2 66 83.3
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.1e-12 80.1 63 60.3
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 5.8e-11 74.3 230 74.8


User provided reference genes

Program Settings