Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 4.1e-33 144.1 69 100.0
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 1.3e-26 122.5 75 81.3
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 1.8e-20 102.1 64 75.0
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.0e-19 98.6 61 75.4
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.0e-19 98.6 62 72.6
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.0e-19 98.6 64 73.4
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 4.4e-19 97.4 73 67.1
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 7.6e-19 96.7 62 72.6
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 7.6e-19 96.7 65 72.3
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 7.6e-19 96.7 67 67.2
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.7e-18 95.5 68 64.7
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-18 95.5 67 65.7
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-18 95.5 67 65.7
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.7e-18 95.5 67 65.7
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 2.2e-18 95.1 64 67.2
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 6.4e-18 93.6 66 66.7
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 6.4e-18 93.6 73 63.0
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 6.4e-18 93.6 64 68.8
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 8.4e-18 93.2 68 66.2
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.9e-17 92.0 62 64.5
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 9.3e-17 89.7 64 62.5
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 9.3e-17 89.7 62 66.1
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 7.8e-16 86.7 62 64.5
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 7.8e-16 86.7 62 64.5
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 7.8e-16 86.7 69 65.2
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 7.8e-16 86.7 63 63.5
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.0e-15 86.3 65 64.6
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.0e-15 86.3 62 66.1
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.7e-15 85.5 64 59.4
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 3.9e-15 84.3 69 65.2
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 5.1e-15 84.0 64 60.9
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-14 82.4 76 60.5
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-14 82.4 76 60.5
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-14 82.4 76 60.5
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 1.5e-14 82.4 76 60.5
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 1.5e-14 82.4 76 60.5
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-14 82.4 64 60.9
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-14 82.4 64 60.9
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-14 82.4 64 60.9
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.9e-14 82.0 64 57.8
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.5e-14 81.6 62 67.7
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.3e-14 81.3 64 65.6
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 4.3e-14 80.9 76 60.5
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 5.6e-14 80.5 63 55.6
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 5.6e-14 80.5 63 55.6
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 5.6e-14 80.5 67 59.7
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 7.3e-14 80.1 64 64.1
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 7.3e-14 80.1 62 59.7
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 7.3e-14 80.1 62 58.1
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 9.6e-14 79.7 64 64.1
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 9.6e-14 79.7 64 57.8
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 9.6e-14 79.7 68 57.4
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.3e-13 79.3 66 59.1
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 1.6e-13 79.0 62 58.1
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 1.6e-13 79.0 61 59.0
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.6e-13 79.0 68 57.4
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 1.6e-13 79.0 64 62.5
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 2.1e-13 78.6 76 57.9
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.1e-13 78.6 64 59.4
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 3.6e-13 77.8 76 57.9
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.6e-13 77.8 63 58.7
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.6e-13 77.8 67 55.2
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.6e-13 77.8 62 59.7
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 4.8e-13 77.4 62 58.1
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 8.1e-13 76.6 62 58.1
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 8.1e-13 76.6 63 57.1
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.1e-12 76.3 63 58.7
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 1.4e-12 75.9 76 56.6
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 1.4e-12 75.9 76 56.6
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 1.4e-12 75.9 76 56.6
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.4e-12 75.9 60 63.3
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 1.4e-12 75.9 67 58.2
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.4e-12 75.9 67 58.2
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 1.4e-12 75.9 67 58.2
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.4e-12 75.9 62 56.5
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 1.8e-12 75.5 76 56.6
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 1.8e-12 75.5 76 56.6
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.8e-12 75.5 62 56.5
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 1.8e-12 75.5 67 56.7
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 2.4e-12 75.1 67 55.2
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 2.4e-12 75.1 67 55.2
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 2.4e-12 75.1 62 56.5
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 3.1e-12 74.7 64 53.1
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 4.0e-12 74.3 62 58.1
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 4.0e-12 74.3 76 55.3
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 4.0e-12 74.3 62 58.1
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 4.0e-12 74.3 62 58.1
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 4.0e-12 74.3 62 58.1
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 4.0e-12 74.3 76 55.3
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 4.0e-12 74.3 62 54.8
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 4.0e-12 74.3 64 51.6
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 5.3e-12 73.9 76 53.9
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 5.3e-12 73.9 76 53.9
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 5.3e-12 73.9 76 53.9
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 5.3e-12 73.9 76 55.3
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 6.9e-12 73.6 76 52.6
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 6.9e-12 73.6 62 58.1
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 6.9e-12 73.6 62 58.1
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 9.0e-12 73.2 62 56.5
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 9.0e-12 73.2 62 56.5
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 9.0e-12 73.2 76 53.9
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 1.2e-11 72.8 62 56.5
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.2e-11 72.8 62 56.5
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 1.2e-11 72.8 64 57.8
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.5e-11 72.4 62 56.5
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.5e-11 72.4 68 48.5
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-11 72.0 76 52.6
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 2.0e-11 72.0 76 52.6
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.0e-11 72.0 60 61.7
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.6e-11 71.6 62 53.2
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 2.6e-11 71.6 62 53.2
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 2.6e-11 71.6 62 54.8
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 2.6e-11 71.6 62 54.8
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 2.6e-11 71.6 62 54.8
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 2.6e-11 71.6 62 54.8
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 2.6e-11 71.6 62 54.8
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 2.6e-11 71.6 60 58.3
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 2.6e-11 71.6 60 60.0
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 2.6e-11 71.6 62 56.5
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 3.4e-11 71.2 62 54.8
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 3.4e-11 71.2 62 56.5
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 3.4e-11 71.2 63 54.0
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 4.5e-11 70.9 62 54.8
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 4.5e-11 70.9 60 55.0
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 4.5e-11 70.9 63 57.1
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 5.8e-11 70.5 62 51.6
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.8e-11 70.5 65 50.8
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 7.6e-11 70.1 61 55.7
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 7.6e-11 70.1 62 54.8
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 7.6e-11 70.1 62 54.8
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 7.6e-11 70.1 63 57.1
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 7.6e-11 70.1 62 56.5
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 9.9e-11 69.7 62 51.6
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 9.9e-11 69.7 62 54.8
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.3e-10 69.3 62 54.8
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.3e-10 69.3 48 70.8
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.7e-10 68.9 62 54.8
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.7e-10 68.9 63 57.1
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.7e-10 68.9 48 68.8
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.2e-10 68.6 63 55.6
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 2.2e-10 68.6 55 61.8
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 2.2e-10 68.6 55 61.8
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.9e-10 68.2 61 54.1
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 2.9e-10 68.2 62 50.0
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 2.9e-10 68.2 61 55.7
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 2.9e-10 68.2 62 54.8
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 3.8e-10 67.8 62 51.6
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 4.9e-10 67.4 62 53.2
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 4.9e-10 67.4 62 54.8
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 6.4e-10 67.0 62 53.2
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 6.4e-10 67.0 62 53.2
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 6.4e-10 67.0 62 51.6
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 8.4e-10 66.6 62 54.8
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 8.4e-10 66.6 61 52.5
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 8.4e-10 66.6 64 50.0
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.1e-09 66.2 64 53.1
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 1.4e-09 65.9 60 53.3
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 1.4e-09 65.9 62 51.6
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 1.4e-09 65.9 62 48.4
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.9e-09 65.5 63 50.8
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.9e-09 65.5 62 53.2
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 2.4e-09 65.1 62 51.6
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 2.4e-09 65.1 62 48.4
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.2e-09 64.7 61 54.1
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.2e-09 64.7 62 51.6
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 3.2e-09 64.7 62 50.0
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 7.1e-09 63.5 63 52.4
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 9.3e-09 63.2 61 52.5
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 1.6e-08 62.4 61 50.8
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 1.6e-08 62.4 48 60.4
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.0e-08 60.5 61 50.8
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 1.3e-07 59.3 54 53.7
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 1.3e-07 59.3 51 49.0
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 1.8e-07 58.9 64 51.6
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 3.0e-07 58.2 60 46.7
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 3.9e-07 57.8 57 50.9
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 1.1e-06 56.2 51 52.9
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.1e-06 56.2 61 49.2
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.5e-06 55.8 47 51.1
Nn2g12399 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.3e-06 54.7 48 58.3


User provided reference genes

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