Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1763 Acer truncatum HOM05D005122 ORTHO05D006057 0.0e+00 1206.8 625 100.0
Ciclev10007237m.g Citrus clementina HOM05D005122 ORTHO05D006057 7.4e-238 827.4 617 70.8
Cfa002940 Carpinus fangiana HOM05D005122 ORTHO05D006057 6.7e-215 751.1 628 66.1
GSVIVG01015020001 Vitis vinifera HOM05D005122 ORTHO05D006057 4.2e-209 731.9 618 63.4
Haze_26065 Corylus avellana HOM05D005122 ORTHO05D006057 7.2e-209 731.1 650 63.1
Potri.006G136900 Populus trichocarpa HOM05D005122 ORTHO05D006057 6.3e-205 718.0 606 63.2
Prupe.7G192500 Prunus persica HOM05D005122 ORTHO05D006057 9.1e-204 714.1 625 63.8
Thecc.09G070600 Theobroma cacao HOM05D005122 ORTHO05D006057 1.2e-203 713.8 626 62.8
QL11p002844 Quercus lobata HOM05D005122 ORTHO05D006057 3.4e-203 712.2 626 63.3
Manes.16G092800 Manihot esculenta HOM05D005122 ORTHO05D006057 1.3e-202 710.3 621 62.5
CiPaw.03G200700 Carya illinoinensis HOM05D005122 ORTHO05D006057 2.3e-199 699.5 617 64.5
MD02G1100300 Malus domestica HOM05D005122 ORTHO05D006057 6.7e-199 698.0 627 61.1
Sabra06G0107000 Salix brachista HOM05D005122 ORTHO05D006057 5.7e-198 694.9 657 59.1
TWI34G1091 Tripterygium wilfordii HOM05D005122 ORTHO05D006057 7.7e-195 684.5 605 62.0
Duzib168G0854 Durio zibethinus HOM05D005122 ORTHO05D006057 3.3e-190 669.1 624 60.6
MD15G1223300 Malus domestica HOM05D005122 ORTHO05D006057 3.3e-190 669.1 622 59.6
Gorai.009G037900 Gossypium raimondii HOM05D005122 ORTHO05D006057 8.2e-189 664.5 622 60.5
Cpa.g.sc82.66 Carica papaya HOM05D005122 ORTHO05D006057 1.8e-188 663.3 786 49.6
Gohir.D05G037400 Gossypium hirsutum HOM05D005122 ORTHO05D006057 2.4e-188 662.9 622 60.3
Gohir.A05G035900 Gossypium hirsutum HOM05D005122 ORTHO05D006057 7.0e-188 661.4 622 60.0
CSS0025527 Camellia sinensis var. sinensis HOM05D005122 ORTHO05D006057 1.6e-187 660.2 615 60.0
RcHm_v2.0_Chr2g0095891 Rosa chinensis HOM05D005122 ORTHO05D006057 2.7e-184 649.4 616 58.9
Nn8g38537 Nelumbo nucifera HOM05D005122 ORTHO05D006057 3.6e-184 649.0 613 58.1
Cc06_g12660 Coffea canephora HOM05D005122 ORTHO05D006057 5.7e-182 641.7 627 57.7
CANSAT56G2058 Cannabis sativa HOM05D005122 ORTHO05D006057 3.7e-181 639.0 615 58.0
FAN28G0954 Fragaria x ananassa HOM05D005122 ORTHO05D006057 2.4e-180 636.3 617 58.8
Nitab4.5_0000170g0030 Nicotiana tabacum HOM05D005122 ORTHO05D006057 9.1e-180 634.4 625 57.4
arahy.Tifrunner.gnm1.ann1.C788P2 Arachis hypogaea HOM05D005122 ORTHO05D006057 2.0e-179 633.3 609 57.1
FAN19G2002 Fragaria x ananassa HOM05D005122 ORTHO05D006057 2.0e-179 633.3 617 58.8
Rhsim03G0225900 Rhododendron simsii HOM05D005122 ORTHO05D006057 4.5e-179 632.1 614 57.2
Nitab4.5_0007169g0020 Nicotiana tabacum HOM05D005122 ORTHO05D006057 1.7e-178 630.2 623 56.7
Phvul.003G127600 Phaseolus vulgaris HOM05D005122 ORTHO05D006057 3.8e-178 629.0 616 55.0
CANSAT56G0085 Cannabis sativa HOM05D005122 ORTHO05D006057 6.5e-178 628.2 616 57.5
Sopen07g022170 Solanum pennellii HOM05D005122 ORTHO05D006057 8.6e-178 627.9 625 57.6
CAN.G210.4 Capsicum annuum HOM05D005122 ORTHO05D006057 1.5e-177 627.1 626 57.2
Glyma.13G113900 Glycine max HOM05D005122 ORTHO05D006057 1.9e-177 626.7 617 55.1
PGSC0003DMG400013574 Solanum tuberosum HOM05D005122 ORTHO05D006057 7.2e-177 624.8 626 56.9
Rhsim05G0002500 Rhododendron simsii HOM05D005122 ORTHO05D006057 9.5e-177 624.4 625 56.8
Glyma.17G045900 Glycine max HOM05D005122 ORTHO05D006057 1.6e-176 623.6 637 54.5
Solyc07g042500.4 Solanum lycopersicum HOM05D005122 ORTHO05D006057 1.6e-176 623.6 623 57.0
FvH4_1g09310 Fragaria vesca HOM05D005122 ORTHO05D006057 2.1e-176 623.2 618 57.4
arahy.Tifrunner.gnm1.ann1.EYQ1XG Arachis hypogaea HOM05D005122 ORTHO05D006057 2.8e-176 622.9 610 56.7
vmacro06355 Vaccinium macrocarpon HOM05D005122 ORTHO05D006057 4.7e-176 622.1 611 55.2
Ca_30968_v3 Cicer arietinum L. HOM05D005122 ORTHO05D006057 1.0e-175 620.9 606 55.9
Lj4g0009327 Lotus japonicus HOM05D005122 ORTHO05D006057 1.3e-173 614.0 623 54.7
COL.COLO4_21211 Corchorus olitorius HOM05D005122 ORTHO05D006057 1.1e-172 610.9 559 62.3
VMungo1215G1386 Vigna mungo HOM05D005122 ORTHO05D006057 3.8e-170 602.4 619 54.3
PGR142G3115 Punica granatum HOM05D005122 ORTHO05D006057 4.3e-169 599.0 646 53.1
DCAR_028528 Daucus carota HOM05D005122 ORTHO05D006057 5.6e-169 598.6 632 52.7
Medtr4g124670 Medicago truncatula HOM05D005122 ORTHO05D006057 6.1e-168 595.1 605 54.2
ECA234G0156 Erigeron canadensis HOM05D005122 ORTHO05D006057 1.4e-167 594.0 622 52.9
Lalb_Chr13g0299211 Lupinus albus HOM05D005122 ORTHO05D006057 3.0e-167 592.8 656 53.0
BraA10t44307Z Brassica rapa HOM05D005122 ORTHO05D006057 2.0e-166 590.1 622 51.3
BcaC04g18854 Brassica carinata HOM05D005122 ORTHO05D006057 3.4e-166 589.3 621 51.5
BolC9t58866H Brassica oleracea HOM05D005122 ORTHO05D006057 4.4e-166 589.0 621 51.4
TPR.G12583 Trifolium pratense HOM05D005122 ORTHO05D006057 7.5e-166 588.2 685 49.6
A10p22480 Brassica napus HOM05D005122 ORTHO05D006057 1.7e-165 587.0 621 51.0
ClCG11G000010 Citrullus lanatus HOM05D005122 ORTHO05D006057 2.2e-165 586.6 614 55.4
C09p60330 Brassica napus HOM05D005122 ORTHO05D006057 8.3e-165 584.7 604 52.0
MSTRG.19429 Avicennia marina HOM05D005122 ORTHO05D006057 7.0e-164 581.6 622 53.5
Aqoxy7G00978 Aquilegia oxysepala HOM05D005122 ORTHO05D006057 2.0e-163 580.1 618 53.4
AT2G03140 Arabidopsis thaliana HOM05D005122 ORTHO05D006057 6.0e-163 578.6 605 51.7
Sp6g27400 Schrenkiella parvula HOM05D005122 ORTHO05D006057 1.7e-162 577.0 604 52.8
Hund26106 Selenicereus undatus HOM05D005122 ORTHO05D006057 1.5e-161 573.9 639 52.0
Thhalv10012418m.g Eutrema salsugineum HOM05D005122 ORTHO05D006057 2.5e-161 573.2 604 51.8
Aa31LG4G13020 Aethionema arabicum HOM05D005122 ORTHO05D006057 3.3e-161 572.8 614 53.4
Migut.J00884 Erythranthe guttata HOM05D005122 ORTHO05D006057 8.9e-159 564.7 623 52.0
Peaxi162Scf00191g00046 Petunia axillaris HOM05D005122 ORTHO05D006057 1.2e-158 564.3 629 53.6
AL5G12790 Arabidopsis lyrata HOM05D005122 ORTHO05D006057 2.0e-158 563.5 613 51.1
EL10Ac8g18978 Beta vulgaris HOM05D005122 ORTHO05D006057 2.0e-158 563.5 638 50.5
MELO3C022901.2 Cucumis melo HOM05D005122 ORTHO05D006057 7.5e-158 561.6 600 53.5
Lj4A920G55 Lonicera japonica HOM05D005122 ORTHO05D006057 1.3e-157 560.8 805 44.6
MBI19_g37996_MAGBIO Magnolia biondii HOM05D005122 ORTHO05D006057 4.1e-156 555.8 616 52.4
Carub.0005s0197 Capsella rubella HOM05D005122 ORTHO05D006057 5.4e-156 555.4 604 50.8
HanXRQChr10g0319771 Helianthus annuus HOM05D005122 ORTHO05D006057 1.6e-155 553.9 605 53.4
PSO104G0049 Papaver somniferum HOM05D005122 ORTHO05D006057 3.0e-154 549.7 615 51.9
SalBow6G0425 Salvia bowleyana HOM05D005122 ORTHO05D006057 1.5e-153 547.4 605 51.6
AUR62028313 Chenopodium quinoa HOM05D005122 ORTHO05D006057 1.9e-153 547.0 612 52.3
AUR62025308 Chenopodium quinoa HOM05D005122 ORTHO05D006057 6.2e-152 542.0 612 51.8
PSO421G0465 Papaver somniferum HOM05D005122 ORTHO05D006057 2.3e-146 523.5 613 50.9
Ca_21337_v3 Cicer arietinum L. HOM05D005122 ORTHO05D006057 1.1e-143 514.6 518 54.6
Lsat_1_v5_gn_5_139061 Lactuca sativa HOM05D005122 ORTHO05D006057 1.5e-142 510.8 608 49.0
ATR0681G090 Amborella trichopoda HOM05D005122 ORTHO05D006057 4.4e-142 509.2 631 47.4
TAR624G1119 Trochodendron aralioides HOM05D005122 ORTHO05D006057 3.8e-141 506.1 446 63.5
Psat4g019280 Pisum sativum HOM05D005122 ORTHO05D006057 1.2e-139 501.1 522 53.3
Dinv42429 Davidia involucrata HOM05D005122 ORTHO05D006057 6.0e-139 498.8 621 49.6
Actinidia39620 Actinidia chinensis HOM05D005122 ORTHO05D006057 8.7e-138 495.0 408 63.7
Ah.14g084680 Amaranthus hybridus HOM05D005122 ORTHO05D006057 3.1e-135 486.5 593 49.7
Sc08g0009130 Simmondsia chinensis HOM05D005122 ORTHO05D006057 5.2e-135 485.7 557 51.3
HPP92_016226 Vanilla planifolia HOM05D005122 ORTHO05D006057 1.7e-133 480.7 630 45.4
Zm00001eb313890 Zea mays HOM05D005122 ORTHO05D006057 1.9e-129 467.2 603 44.4
SGA_v2.0_scaffold31G12693 Striga asiatica HOM05D005122 ORTHO05D006057 9.6e-129 464.9 522 52.5
Sed0023749 Sechium edule HOM05D005122 ORTHO05D006057 1.6e-128 464.2 495 53.5
CDE04G2636 Ceratophyllum demersum HOM05D005122 ORTHO05D006057 9.0e-127 458.4 611 44.8
SEGI_27630 Sequoiadendron giganteum HOM05D005122 ORTHO05D006057 9.6e-121 438.3 625 43.2
Oeu028111.1 Olea europaea HOM05D005122 ORTHO05D006057 1.7e-109 401.0 422 55.5
unitig_27.g24782 Utricularia gibba HOM05D005122 ORTHO05D006057 2.8e-104 383.6 547 42.4
Mapoly0027s0173 Marchantia polymorpha HOM05D005122 ORTHO05D006057 6.3e-104 382.5 641 37.8
Pp3c18_16020 Physcomitrium patens HOM05D005122 ORTHO05D006057 2.0e-102 377.5 658 36.5
AagrBONN_evm.TU.Sc2ySwM_362.1932 Anthoceros agrestis HOM05D005122 ORTHO05D006057 7.7e-102 375.6 592 40.2
CsaV3_5G027680 Cucumis sativus L. HOM05D005122 ORTHO05D006057 4.6e-99 366.3 404 52.7
Os09g0436800 Oryza sativa ssp. japonica HOM05D005122 ORTHO05D006057 8.2e-88 328.9 314 52.2
SMO228G0085 Selaginella moellendorffii HOM05D005122 ORTHO05D006057 4.5e-78 296.6 558 37.3
THA.LOC104811288 Tarenaya hassleriana HOM05D005122 ORTHO05D006057 5.7e-73 279.6 333 53.8
CBR_g48436 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-68 264.6 597 31.8
Eucgr.C00770 Eucalyptus grandis HOM05D005122 ORTHO05D006057 4.0e-42 177.2 307 43.6
HPP92_016239 Vanilla planifolia HOM05D005122 ORTHO05D006057 1.3e-40 172.2 205 44.4
Eucgr.I00075 Eucalyptus grandis HOM05D005122 ORTHO05D006057 2.2e-40 171.4 143 60.1
arahy.Tifrunner.gnm1.ann1.T9PSLR Arachis hypogaea HOM05D005122 ORTHO05D006057 1.6e-38 165.2 192 50.0
arahy.Tifrunner.gnm1.ann1.UG5RRW Arachis hypogaea HOM05D005122 ORTHO05D006057 1.1e-31 142.5 229 39.3
CARHR289930 Cardamine hirsuta HOM05D005122 ORTHO05D006057 4.7e-27 127.1 112 58.0
Actinidia30254 Actinidia chinensis HOM05D005122 ORTHO05D006057 9.3e-23 112.8 129 46.5
PRCOL_00005095 Prasinoderma coloniale HOM05D005122 ORTHO05D006057 1.6e-14 85.5 189 30.2
Oeu037751.1 Olea europaea HOM05D006164 ORTHO05D001269 4.6e-14 84.0 53 79.2
Nn6g32039 Nelumbo nucifera HOM05D005122 ORTHO05D006057 6.2e-11 73.6 44 86.4
Oeu004189.1 Olea europaea HOM05D006164 ORTHO05D001269 4.5e-09 67.4 52 63.5
CAN.G140.31 Capsicum annuum HOM05D005122 ORTHO05D006057 9.9e-09 66.2 86 46.5
Medtr8g078690 Medicago truncatula HOM05D005122 ORTHO05D000920 7.9e-06 56.6 80 38.8


User provided reference genes

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