Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.7e-57 225.7 111 100.0
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 1.3e-25 119.8 67 85.1
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.5e-24 116.3 67 83.6
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.5e-24 115.5 67 82.1
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 3.3e-24 115.2 67 80.6
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.3e-24 114.8 76 77.6
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 5.6e-24 114.4 67 80.6
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 1.6e-23 112.8 69 79.7
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.6e-23 112.8 65 81.5
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.1e-23 112.5 69 78.3
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.1e-23 112.5 69 78.3
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.1e-23 112.5 69 78.3
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 3.7e-23 111.7 67 79.1
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 8.2e-23 110.5 63 82.5
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.1e-22 110.2 67 79.1
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 1.4e-22 109.8 73 68.5
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.4e-22 109.8 67 80.6
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 3.1e-22 108.6 65 83.1
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 3.1e-22 108.6 67 77.6
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 4.0e-22 108.2 68 80.9
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.0e-22 108.2 89 66.3
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.3e-22 107.8 68 80.9
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.3e-22 107.8 68 80.9
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 5.3e-22 107.8 65 78.5
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 6.9e-22 107.5 67 77.6
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 6.9e-22 107.5 67 74.6
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 9.0e-22 107.1 67 74.6
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 1.2e-21 106.7 66 77.3
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.2e-21 106.7 68 79.4
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.6e-21 105.5 67 76.1
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 3.4e-21 105.1 67 76.1
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.4e-21 105.1 65 80.0
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 4.5e-21 104.8 65 80.0
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 4.5e-21 104.8 58 84.5
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 4.5e-21 104.8 58 84.5
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.0e-20 103.6 65 80.0
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.0e-20 103.6 67 76.1
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.3e-20 103.2 60 80.0
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.3e-20 103.2 60 81.7
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.3e-20 103.2 67 74.6
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.3e-20 103.2 61 82.0
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 1.3e-20 103.2 60 81.7
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.7e-20 102.8 99 55.6
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 2.9e-20 102.1 60 80.0
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.9e-20 101.3 67 74.6
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 4.9e-20 101.3 61 77.0
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 6.5e-20 100.9 78 64.1
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 8.4e-20 100.5 67 74.6
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 8.4e-20 100.5 66 71.2
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.4e-19 99.8 62 75.8
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 1.4e-19 99.8 58 84.5
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 2.5e-19 99.0 62 77.4
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.2e-19 98.6 67 76.1
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 4.2e-19 98.2 65 73.8
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 5.5e-19 97.8 66 71.2
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 7.1e-19 97.4 75 68.0
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.2e-18 96.7 67 71.6
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.6e-18 96.3 63 73.0
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.6e-18 96.3 67 68.7
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 2.1e-18 95.9 67 68.7
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 3.5e-18 95.1 69 71.0
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 3.5e-18 95.1 82 59.8
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 6.0e-18 94.4 66 69.7
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 6.0e-18 94.4 71 71.8
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 7.9e-18 94.0 62 71.0
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 7.9e-18 94.0 61 72.1
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 7.9e-18 94.0 61 72.1
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.0e-17 93.6 68 73.5
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.0e-17 93.6 67 73.1
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.3e-17 93.2 55 80.0
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.3e-17 93.2 67 68.7
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.8e-17 92.8 68 73.5
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.8e-17 92.8 60 76.7
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.8e-17 92.8 63 69.8
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.3e-17 92.4 62 72.6
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 5.1e-17 91.3 67 71.6
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 6.7e-17 90.9 55 76.4
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 8.7e-17 90.5 67 65.7
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.1e-16 90.1 67 62.7
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.1e-16 90.1 67 62.7
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.1e-16 90.1 67 62.7
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 1.1e-16 90.1 60 78.3
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 2.5e-16 89.0 76 61.8
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 3.3e-16 88.6 52 80.8
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 4.3e-16 88.2 59 72.9
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 4.3e-16 88.2 59 72.9
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 4.3e-16 88.2 60 71.7
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 5.7e-16 87.8 49 85.7
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 7.4e-16 87.4 79 62.0
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 9.7e-16 87.0 64 73.4
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.6e-15 86.3 49 79.6
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.6e-15 86.3 49 79.6
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 2.2e-15 85.9 49 77.6
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 2.2e-15 85.9 49 81.6
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 2.8e-15 85.5 64 68.8
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 4.8e-15 84.7 60 70.0
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 8.2e-15 84.0 67 59.7
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 8.2e-15 84.0 67 59.7
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.4e-14 83.2 86 54.7
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.4e-14 83.2 63 68.3
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 4.1e-14 81.6 65 63.1
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 4.1e-14 81.6 65 63.1
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 4.1e-14 81.6 63 65.1
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 5.3e-14 81.3 89 53.9
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 6.9e-14 80.9 51 72.5
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 6.9e-14 80.9 51 74.5
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 6.9e-14 80.9 50 82.0
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 6.9e-14 80.9 69 63.8
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 6.9e-14 80.9 67 61.2
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 6.9e-14 80.9 59 66.1
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 6.9e-14 80.9 45 82.2
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 1.5e-13 79.7 59 64.4
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.5e-13 79.7 58 75.9
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 2.6e-13 79.0 58 60.3
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.4e-13 78.6 49 81.6
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 5.9e-13 77.8 67 67.2
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 5.9e-13 77.8 48 75.0
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.0e-12 77.0 50 76.0
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.0e-12 77.0 45 82.2
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 1.7e-12 76.3 47 72.3
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.7e-12 76.3 56 71.4
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 2.9e-12 75.5 48 77.1
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 5.0e-12 74.7 66 56.1
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.0e-12 74.7 67 64.2
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 5.0e-12 74.7 62 59.7
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.1e-11 73.6 42 81.0
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.9e-11 72.8 43 76.7
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 1.9e-11 72.8 42 81.0
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 2.5e-11 72.4 70 61.4
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 2.5e-11 72.4 53 66.0
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 2.5e-11 72.4 64 56.2
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 4.2e-11 71.6 85 49.4
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 4.2e-11 71.6 85 49.4
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 9.4e-11 70.5 60 58.3
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.2e-10 70.1 38 84.2
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.6e-10 69.7 61 55.7
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.6e-10 69.7 57 61.4
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 2.1e-10 69.3 49 69.4
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 2.1e-10 69.3 49 67.3
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 3.6e-10 68.6 54 64.8
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 7.9e-10 67.4 51 72.5
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 7.9e-10 67.4 50 62.0
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 1.4e-09 66.6 54 57.4
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.8e-09 66.2 54 55.6
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.3e-09 65.9 53 62.3
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 3.0e-09 65.5 50 62.0
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 3.9e-09 65.1 47 74.5
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 6.7e-09 64.3 54 57.4
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 6.7e-09 64.3 51 52.9
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 8.8e-09 63.9 42 69.0
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 8.8e-09 63.9 54 55.6
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.9e-08 62.8 94 42.6
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 3.3e-08 62.0 65 55.4
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 4.3e-08 61.6 80 45.0
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 9.7e-08 60.5 52 59.6
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 2.2e-07 59.3 50 62.0
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 3.7e-07 58.5 60 50.0
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 3.7e-07 58.5 65 49.2
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 3.7e-07 58.5 51 56.9
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 4.8e-07 58.2 69 55.1
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 6.3e-07 57.8 58 51.7
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 8.2e-07 57.4 37 73.0
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 8.2e-07 57.4 69 49.3
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 8.2e-07 57.4 51 54.9
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.4e-06 56.6 47 55.3
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 5.3e-06 54.7 61 50.8
Medtr4g125015 Medicago truncatula HOM05D003803 ORTHO05D004456 6.9e-06 54.3 27 88.9


User provided reference genes

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