Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 1.4e-159 566.2 295 100.0
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 1.6e-126 456.4 284 84.5
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 7.0e-122 441.0 283 80.9
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 2.0e-121 439.5 283 80.2
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 2.7e-121 439.1 283 80.6
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 5.0e-120 434.9 283 79.5
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 8.6e-120 434.1 283 79.5
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 2.5e-119 432.6 284 77.8
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 2.5e-119 432.6 290 78.6
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 5.5e-119 431.4 283 78.1
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 7.2e-119 431.0 283 79.9
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 7.2e-119 431.0 283 80.2
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 1.6e-118 429.9 280 79.3
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 2.1e-118 429.5 283 77.7
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.8e-118 429.1 280 78.9
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.0e-117 427.2 280 78.2
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 1.4e-117 426.8 280 78.6
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.2e-116 423.7 284 78.2
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 1.5e-116 423.3 283 76.7
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 2.0e-116 422.9 283 76.7
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 2.0e-116 422.9 280 77.1
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 2.0e-116 422.9 280 77.9
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 4.4e-116 421.8 283 76.7
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 4.4e-116 421.8 283 76.7
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 2.8e-115 419.1 285 77.9
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 1.1e-114 417.2 278 76.3
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 1.1e-114 417.2 283 75.6
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.4e-114 416.8 285 76.5
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.8e-114 416.4 283 77.0
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 2.4e-114 416.0 284 77.1
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 5.4e-114 414.8 283 76.3
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 1.2e-113 413.7 283 76.3
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 1.2e-113 413.7 283 77.7
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 2.7e-113 412.5 283 75.6
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 3.5e-113 412.1 283 74.6
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 1.3e-112 410.2 278 75.5
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 8.6e-112 407.5 283 75.3
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.5e-111 406.8 283 75.6
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 1.5e-111 406.8 283 75.6
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 1.5e-111 406.8 284 74.6
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 2.5e-111 406.0 283 74.6
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 4.3e-111 405.2 281 75.8
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 5.6e-111 404.8 271 76.8
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 9.5e-111 404.1 283 74.9
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 2.8e-110 402.5 283 73.9
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 3.6e-110 402.1 283 74.6
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.4e-109 400.2 283 73.1
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.8e-109 399.8 286 73.8
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 1.8e-109 399.8 283 73.1
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 3.1e-109 399.1 283 73.9
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 2.6e-108 396.0 284 72.2
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 7.5e-108 394.4 283 70.7
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 9.8e-108 394.0 283 71.0
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 1.3e-107 393.7 275 73.8
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 4.9e-107 391.7 278 72.7
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 8.3e-107 391.0 283 73.1
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 8.3e-107 391.0 278 70.9
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 3.2e-106 389.0 278 70.1
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 4.1e-106 388.7 263 75.3
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 9.2e-106 387.5 283 72.4
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 1.2e-105 387.1 270 73.7
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 2.7e-105 386.0 283 72.4
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.7e-105 386.0 283 72.4
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.7e-105 386.0 283 72.4
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 3.5e-105 385.6 275 73.8
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 5.0e-104 381.7 285 71.2
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 6.6e-104 381.3 285 70.9
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 2.5e-103 379.4 299 68.9
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 3.3e-103 379.0 285 70.9
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 3.3e-103 379.0 285 70.2
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.3e-103 379.0 257 76.7
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 4.3e-103 378.6 284 70.4
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 9.5e-103 377.5 285 69.5
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 9.5e-103 377.5 283 69.6
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 3.6e-102 375.6 269 73.2
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 5.2e-101 371.7 317 67.2
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 6.8e-101 371.3 284 70.1
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 1.5e-100 370.2 229 82.5
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 5.8e-100 368.2 280 67.5
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.3e-99 367.1 283 70.0
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.7e-99 366.7 284 67.6
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.7e-99 366.7 275 67.6
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 8.3e-99 364.4 283 68.9
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 2.4e-98 362.8 283 70.3
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 7.0e-98 361.3 306 68.0
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 1.2e-97 360.5 276 68.1
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 3.9e-96 355.5 248 74.2
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 6.6e-96 354.8 310 62.3
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 1.9e-95 353.2 260 71.2
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 7.3e-95 351.3 243 76.5
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 9.5e-95 350.9 235 77.4
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 4.0e-93 345.5 283 66.8
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 6.8e-93 344.7 237 73.4
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.0e-92 343.2 264 68.9
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 2.0e-92 343.2 302 63.9
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 1.7e-91 340.1 283 64.7
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.7e-91 340.1 283 65.0
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.9e-90 336.7 229 77.3
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 1.3e-88 330.5 280 62.1
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 9.5e-87 324.3 342 57.0
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 4.7e-86 322.0 235 72.3
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 4.0e-85 318.9 223 75.8
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.5e-84 317.0 235 71.5
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 2.6e-84 316.2 326 58.6
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 8.7e-80 301.2 203 77.8
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 8.1e-78 294.7 378 48.1
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.1e-77 294.3 275 57.1
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 9.0e-77 291.2 194 77.8
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 3.2e-74 282.7 204 70.6
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 9.3e-74 281.2 330 51.8
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 2.7e-73 279.6 263 57.4
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 1.3e-72 277.3 198 73.2
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 3.0e-72 276.2 238 60.9
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 2.5e-71 273.1 223 65.0
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 6.2e-70 268.5 240 64.2
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 6.9e-61 238.4 141 86.5
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.1e-58 228.4 347 45.5
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 1.6e-57 227.3 196 63.8
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 2.7e-57 226.5 163 71.8
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 4.3e-55 219.2 149 75.2
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 3.4e-52 209.5 145 71.0
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 3.8e-51 206.1 266 48.1
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 3.8e-51 206.1 253 43.1
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 2.7e-49 199.9 254 44.5
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 6.7e-48 195.3 268 41.4
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 5.7e-47 192.2 125 77.6
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.6e-41 172.9 129 69.8
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 9.4e-26 121.7 134 53.7
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 3.6e-25 119.8 99 66.7
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 1.1e-23 114.8 267 31.8
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 4.4e-23 112.8 182 42.9
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 3.1e-21 106.7 73 76.7
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 3.5e-20 103.2 93 58.1
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 2.7e-17 93.6 78 65.4
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.2e-15 88.2 146 37.0
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 5.7e-15 85.9 56 78.6
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 1.3e-14 84.7 50 82.0
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 1.7e-11 74.3 50 76.0
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 3.8e-11 73.2 65 52.3
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 1.6e-09 67.8 66 50.0
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 8.0e-09 65.5 67 52.2
arahy.Tifrunner.gnm1.ann1.9B3XF4 Arachis hypogaea HOM05D000237 ORTHO05D017465 1.3e-06 58.2 47 57.4
arahy.Tifrunner.gnm1.ann1.2X24PF Arachis hypogaea HOM05D002335 ORTHO05D006282 6.3e-06 55.8 56 55.4


User provided reference genes

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