Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 3.9e-102 374.8 189 100.0
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 2.6e-98 362.1 191 96.9
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 9.1e-91 337.0 191 88.0
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 7.7e-90 334.0 189 88.4
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 2.2e-89 332.4 191 88.0
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 2.2e-89 332.4 194 85.1
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 2.9e-89 332.0 194 86.1
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 3.8e-89 331.6 194 85.6
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 3.8e-89 331.6 190 86.8
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.1e-88 330.1 190 86.3
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.9e-88 329.3 193 85.0
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 3.2e-88 328.6 193 85.5
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 7.2e-88 327.4 194 84.5
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 7.2e-88 327.4 194 86.1
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 9.4e-88 327.0 190 85.3
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.7e-87 325.5 198 83.8
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.7e-87 324.7 194 84.0
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 4.7e-87 324.7 193 85.5
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.0e-86 323.6 189 83.1
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.8e-86 322.8 194 85.1
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.3e-86 322.4 198 83.3
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 4.0e-86 321.6 189 82.5
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 5.2e-86 321.2 189 82.5
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 6.8e-86 320.9 189 82.5
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.2e-85 320.1 192 83.9
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.5e-85 319.7 189 84.1
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.6e-85 318.9 192 83.3
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 2.6e-85 318.9 192 83.9
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.6e-85 318.9 198 80.3
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.4e-85 318.5 189 84.1
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 4.4e-85 318.2 195 82.1
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 5.7e-85 317.8 189 82.5
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 9.8e-85 317.0 193 81.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.8e-85 317.0 190 84.2
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 9.8e-85 317.0 192 82.3
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.3e-84 316.6 189 82.0
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.3e-84 316.6 194 82.0
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.7e-84 316.2 194 83.0
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.7e-84 316.2 189 83.6
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 2.2e-84 315.8 193 81.3
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 2.2e-84 315.8 192 80.2
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.2e-84 315.8 189 83.6
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 2.8e-84 315.5 193 81.9
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 3.7e-84 315.1 195 80.5
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 3.7e-84 315.1 189 82.5
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.3e-84 314.3 195 82.1
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 6.3e-84 314.3 189 83.1
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 8.3e-84 313.9 194 82.0
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-83 313.5 189 81.5
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.4e-83 313.2 191 82.2
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.4e-83 313.2 201 78.1
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.8e-83 312.8 189 82.0
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.8e-83 312.8 199 80.4
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.8e-83 312.8 198 78.3
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.4e-83 312.4 195 82.1
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.4e-83 312.4 195 82.1
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 2.4e-83 312.4 191 80.1
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.1e-83 312.0 200 79.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.1e-83 312.0 200 79.0
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 4.1e-83 311.6 193 81.9
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 5.4e-83 311.2 195 81.5
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 5.4e-83 311.2 194 78.9
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.6e-82 309.7 199 77.9
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.7e-82 308.9 200 78.0
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 3.5e-82 308.5 197 76.6
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 3.5e-82 308.5 194 79.4
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 7.7e-82 307.4 212 72.6
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.0e-81 307.0 205 76.6
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.3e-81 306.6 196 78.6
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 2.3e-81 305.8 199 76.4
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 2.9e-81 305.4 200 76.5
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.9e-81 305.4 201 75.1
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.9e-81 305.4 189 79.9
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.8e-81 305.1 203 78.8
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.8e-81 305.1 203 74.9
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 3.8e-81 305.1 194 80.9
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 6.6e-81 304.3 194 79.9
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.1e-80 303.5 207 77.3
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.1e-80 303.5 201 74.6
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.5e-80 303.1 203 75.9
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.9e-80 302.8 198 78.3
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.5e-80 302.4 198 75.3
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.5e-80 302.4 201 74.1
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 3.3e-80 302.0 191 80.1
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.3e-80 302.0 196 76.5
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.6e-79 298.5 201 76.6
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 6.1e-79 297.7 193 79.3
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 6.1e-79 297.7 204 72.1
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 8.0e-79 297.4 196 76.5
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.0e-78 297.0 199 74.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.0e-78 297.0 199 74.9
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.4e-78 296.6 196 74.5
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.4e-78 296.6 172 86.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.4e-78 296.6 199 74.4
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 3.0e-78 295.4 199 74.9
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 8.9e-78 293.9 191 78.0
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.2e-77 293.5 199 73.4
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.5e-77 293.1 198 74.7
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.5e-77 293.1 198 74.7
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 2.6e-77 292.4 196 74.0
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 3.4e-77 292.0 238 65.1
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 5.7e-77 291.2 198 75.3
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 5.7e-77 291.2 192 77.1
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 9.8e-77 290.4 199 74.9
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 9.8e-77 290.4 199 73.4
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 9.8e-77 290.4 199 72.4
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.3e-76 290.0 199 74.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.2e-76 289.3 199 73.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.2e-76 289.3 199 73.4
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 3.7e-76 288.5 199 73.4
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 6.3e-76 287.7 198 75.3
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 4.1e-75 285.0 198 73.2
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.1e-75 285.0 174 82.2
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 2.7e-74 282.3 180 77.8
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 2.7e-74 282.3 199 73.4
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 4.5e-74 281.6 202 72.3
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.0e-73 280.4 201 70.6
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.3e-73 280.0 186 75.3
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.3e-73 280.0 201 70.6
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 5.0e-73 278.1 210 68.1
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.6e-73 277.3 176 81.2
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.1e-72 276.9 179 77.7
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.5e-72 276.6 223 65.5
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 5.6e-72 274.6 184 74.5
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 5.6e-72 274.6 192 70.3
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 9.5e-72 273.9 211 69.2
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.6e-71 273.1 197 67.0
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.1e-71 272.7 192 72.9
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 8.0e-71 270.8 201 70.1
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.5e-69 266.5 205 68.8
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 7.5e-69 264.2 180 72.8
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.9e-68 262.3 196 64.3
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 3.7e-68 261.9 233 62.2
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 8.3e-68 260.8 184 69.6
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.9e-67 259.6 190 70.5
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 3.2e-67 258.8 181 68.5
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 8.6e-65 250.8 182 69.8
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.1e-64 250.4 213 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 7.3e-64 247.7 173 67.6
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.2e-63 246.9 189 69.3
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 4.4e-61 238.4 200 60.5
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 6.4e-60 234.6 175 69.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.2e-58 230.3 201 62.2
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 5.8e-53 211.5 153 69.3
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 6.0e-50 201.4 120 86.7
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.1e-47 193.0 132 75.8
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 7.8e-42 174.5 173 55.5
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.7e-41 173.3 98 89.8
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.5e-40 170.2 110 80.0
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.1e-38 164.1 99 84.8
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.9e-35 153.3 97 75.3
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 7.1e-35 151.4 188 51.6
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 8.1e-31 137.9 192 46.9
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 5.8e-29 131.7 97 72.2
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.3e-28 130.6 72 80.6
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.3e-28 130.6 70 92.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 8.4e-28 127.9 108 64.8
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 9.3e-27 124.4 73 71.2
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 1.9e-24 116.7 185 40.5
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 9.6e-24 114.4 192 39.1
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.4e-22 110.5 99 62.6
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 5.3e-22 108.6 190 41.6
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 3.8e-20 102.4 190 40.5
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.0e-17 94.4 71 67.6
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.5e-16 90.5 73 56.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 8.2e-15 84.7 61 60.7
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 8.2e-15 84.7 56 64.3
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.4e-14 83.2 162 35.8
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.9e-12 76.3 51 74.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.9e-12 75.5 53 71.7
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 3.5e-10 69.3 66 51.5
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 4.3e-08 62.4 72 51.4
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.4e-06 57.4 57 59.6


User provided reference genes

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