Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1582 Acer truncatum HOM05D006771 ORTHO05D008296 2.2e-233 812.0 421 100.0
Ciclev10010605m.g Citrus clementina HOM05D006771 ORTHO05D008296 7.4e-109 398.3 410 57.3
Dinv36762 Davidia involucrata HOM05D006771 ORTHO05D008296 1.0e-73 281.6 465 41.9
Potri.006G151100 Populus trichocarpa HOM05D006771 ORTHO05D008296 4.0e-70 269.6 472 41.1
Thecc.09G090100 Theobroma cacao HOM05D006771 ORTHO05D008296 5.2e-70 269.2 422 45.0
COL.COLO4_18206 Corchorus olitorius HOM05D006771 ORTHO05D008296 8.9e-70 268.5 414 44.7
QL02p062800 Quercus lobata HOM05D006771 ORTHO05D008296 4.4e-69 266.2 420 44.3
Duzib187G1830 Durio zibethinus HOM05D006771 ORTHO05D008296 2.2e-68 263.8 447 43.2
Gohir.D06G070900 Gossypium hirsutum HOM05D006771 ORTHO05D008296 6.2e-63 245.7 464 38.8
Gorai.010G082600 Gossypium raimondii HOM05D006771 ORTHO05D008296 3.1e-62 243.4 467 38.3
GSVIVG01015209001 Vitis vinifera HOM05D006771 ORTHO05D008296 8.9e-62 241.9 453 40.4
Prupe.7G210300 Prunus persica HOM05D006771 ORTHO05D008296 1.2e-61 241.5 426 41.3
TAR624G0646 Trochodendron aralioides HOM05D006771 ORTHO05D008296 1.2e-61 241.5 538 35.9
Gohir.A06G072300 Gossypium hirsutum HOM05D006771 ORTHO05D008296 2.9e-60 236.9 466 38.2
Duzib168G0935 Durio zibethinus HOM05D006771 ORTHO05D008296 3.7e-60 236.5 307 48.2
TWI63G0991 Tripterygium wilfordii HOM05D006771 ORTHO05D008296 4.6e-58 229.6 450 39.6
Manes.03G033100 Manihot esculenta HOM05D006771 ORTHO05D008296 1.0e-57 228.4 406 40.6
Cfa003093 Carpinus fangiana HOM05D006771 ORTHO05D008296 3.0e-57 226.9 461 37.1
Sabra06G0119600 Salix brachista HOM05D006771 ORTHO05D008296 1.9e-56 224.2 535 35.5
Gohir.A07G010700 Gossypium hirsutum HOM05D006771 ORTHO05D008296 3.6e-55 219.9 285 49.5
Gorai.001G011400 Gossypium raimondii HOM05D006771 ORTHO05D008296 2.6e-53 213.8 285 47.0
FvH4_1g07370 Fragaria vesca HOM05D006771 ORTHO05D008296 2.2e-52 210.7 409 38.9
Gohir.D07G011000 Gossypium hirsutum HOM05D006771 ORTHO05D008296 3.7e-52 209.9 325 43.1
FAN23G2606 Fragaria x ananassa HOM05D006771 ORTHO05D008296 1.9e-51 207.6 411 39.9
MD15G1206500 Malus domestica HOM05D006771 ORTHO05D008296 4.1e-51 206.5 408 38.2
FAN26G2123 Fragaria x ananassa HOM05D006771 ORTHO05D008296 9.2e-51 205.3 408 39.0
CiPaw.03G216900 Carya illinoinensis HOM05D006771 ORTHO05D008296 2.1e-50 204.1 454 37.4
FAN26G3254 Fragaria x ananassa HOM05D006771 ORTHO05D008296 3.9e-49 199.9 412 39.1
RcHm_v2.0_Chr2g0093251 Rosa chinensis HOM05D006771 ORTHO05D008296 5.1e-49 199.5 332 41.3
DCAR_024688 Daucus carota HOM05D006771 ORTHO05D008296 1.1e-48 198.4 418 37.3
Actinidia29883 Actinidia chinensis HOM05D006771 ORTHO05D008296 1.9e-48 197.6 516 34.5
CANSAT56G0603 Cannabis sativa HOM05D006771 ORTHO05D008296 1.6e-47 194.5 353 38.0
DCAR_031968 Daucus carota HOM05D006771 ORTHO05D008296 1.6e-47 194.5 447 35.6
FAN28G0978 Fragaria x ananassa HOM05D006771 ORTHO05D008296 5.2e-46 189.5 434 35.9
arahy.Tifrunner.gnm1.ann1.H0G9IY Arachis hypogaea HOM05D006771 ORTHO05D008296 6.8e-46 189.1 339 38.1
FAN19G1581 Fragaria x ananassa HOM05D006771 ORTHO05D008296 2.9e-44 183.7 412 36.4
Phvul.009G232800 Phaseolus vulgaris HOM05D006771 ORTHO05D008296 6.4e-44 182.6 360 38.9
Cc06_g11360 Coffea canephora HOM05D006771 ORTHO05D008296 3.2e-43 180.3 338 38.8
arahy.Tifrunner.gnm1.ann1.LUTY24 Arachis hypogaea HOM05D006771 ORTHO05D008296 4.2e-43 179.9 363 35.5
Nn8g38880 Nelumbo nucifera HOM05D006771 ORTHO05D008296 7.1e-43 179.1 439 35.5
Glyma.09G062700 Glycine max HOM05D006771 ORTHO05D008296 2.1e-42 177.6 391 35.5
Eucgr.C03893 Eucalyptus grandis HOM05D006771 ORTHO05D008296 2.7e-42 177.2 448 32.8
Aqoxy7G01223_Aqoxy7G01224 Aquilegia oxysepala HOM05D006771 ORTHO05D008296 7.8e-42 175.6 235 45.5
SalBow1G1031 Salvia bowleyana HOM05D006771 ORTHO05D008296 1.0e-41 175.3 460 33.0
TPR.G35458 Trifolium pratense HOM05D006771 ORTHO05D008296 5.1e-41 172.9 417 33.8
Eucgr.C03649 Eucalyptus grandis HOM05D006771 ORTHO05D008296 8.7e-41 172.2 448 32.8
Glyma.15G169200 Glycine max HOM05D006771 ORTHO05D008296 1.5e-40 171.4 387 35.9
PGR102G2735 Punica granatum HOM05D006771 ORTHO05D008296 1.9e-40 171.0 375 37.3
Oeu042645.4 Olea europaea HOM05D006771 ORTHO05D008296 3.3e-40 170.2 491 33.6
CsaV3_2G001480 Cucumis sativus L. HOM05D006771 ORTHO05D008296 2.8e-39 167.2 409 34.5
Medtr2g038710 Medicago truncatula HOM05D006771 ORTHO05D008296 2.8e-39 167.2 480 30.8
Lj6g0004334 Lotus japonicus HOM05D006771 ORTHO05D008296 4.7e-39 166.4 336 36.6
vmacro23430 Vaccinium macrocarpon HOM05D006771 ORTHO05D008296 4.7e-39 166.4 359 36.8
Psat1g141720 Pisum sativum HOM05D006771 ORTHO05D008296 3.1e-38 163.7 407 32.9
PSO832G0455 Papaver somniferum HOM05D006771 ORTHO05D008296 4.0e-38 163.3 246 42.7
Ca_02153_v3 Cicer arietinum L. HOM05D006771 ORTHO05D008296 1.5e-37 161.4 260 41.5
ECA234G3532 Erigeron canadensis HOM05D006771 ORTHO05D008296 1.5e-37 161.4 154 52.6
vmacro06287 Vaccinium macrocarpon HOM05D006771 ORTHO05D008296 9.9e-37 158.7 382 35.1
CAN.G235.1 Capsicum annuum HOM05D006771 ORTHO05D008296 1.7e-36 157.9 219 44.3
Nitab4.5_0005033g0010 Nicotiana tabacum HOM05D006771 ORTHO05D008296 2.2e-36 157.5 205 44.4
HanXRQChr12g0354831 Helianthus annuus HOM05D006771 ORTHO05D008296 3.8e-36 156.8 455 29.7
PSO063G0725 Papaver somniferum HOM05D006771 ORTHO05D008296 6.4e-36 156.0 254 39.8
Lalb_Chr08g0232051 Lupinus albus HOM05D006771 ORTHO05D008296 8.4e-36 155.6 157 53.5
Migut.L01489 Erythranthe guttata HOM05D006771 ORTHO05D008296 3.2e-35 153.7 492 29.3
PGSC0003DMG401013152 Solanum tuberosum HOM05D006771 ORTHO05D008296 1.6e-34 151.4 246 38.6
Solyc07g039190.4 Solanum lycopersicum HOM05D006771 ORTHO05D008296 2.1e-34 151.0 350 33.7
Nitab4.5_0005634g0020 Nicotiana tabacum HOM05D006771 ORTHO05D008296 2.7e-34 150.6 226 40.7
Sc18g0002030 Simmondsia chinensis HOM05D006771 ORTHO05D008296 2.7e-34 150.6 133 57.1
Sp6g18570 Schrenkiella parvula HOM05D006771 ORTHO05D008296 3.0e-33 147.1 312 36.2
HanXRQChr10g0319291 Helianthus annuus HOM05D006771 ORTHO05D008296 2.5e-32 144.1 433 28.4
Peaxi162Scf01121g00112 Petunia axillaris HOM05D006771 ORTHO05D008296 2.5e-32 144.1 216 40.7
ClCG11G001770 Citrullus lanatus HOM05D006771 ORTHO05D008296 3.3e-32 143.7 373 32.4
VMungo1309G1333 Vigna mungo HOM05D006771 ORTHO05D008296 4.3e-32 143.3 321 36.8
Ah.14g085210 Amaranthus hybridus HOM05D006771 ORTHO05D008296 1.3e-31 141.7 146 52.1
MBI04_g34126_MAGBIO Magnolia biondii HOM05D006771 ORTHO05D008296 3.6e-31 140.2 266 35.3
A03p13130 Brassica napus HOM05D006771 ORTHO05D008296 8.1e-31 139.0 422 31.0
AUR62027498 Chenopodium quinoa HOM05D006771 ORTHO05D008296 1.8e-30 137.9 343 33.5
Sed0013958 Sechium edule HOM05D006771 ORTHO05D008296 2.4e-30 137.5 523 27.5
CSS0016785 Camellia sinensis var. sinensis HOM05D006771 ORTHO05D008296 3.1e-30 137.1 243 40.3
Lsat_1_v5_gn_5_142241 Lactuca sativa HOM05D006771 ORTHO05D008296 5.3e-30 136.3 377 30.0
C03p15350 Brassica napus HOM05D006771 ORTHO05D008296 9.9e-29 132.1 385 32.7
BolC3t13977H Brassica oleracea HOM05D006771 ORTHO05D008296 1.3e-28 131.7 385 32.2
Rhsim03G0232900 Rhododendron simsii HOM05D006771 ORTHO05D008296 2.2e-28 131.0 299 37.8
BraA03t10624Z Brassica rapa HOM05D006771 ORTHO05D008296 2.9e-28 130.6 333 33.6
Cpa.g.sc93.24 Carica papaya HOM05D006771 ORTHO05D008296 3.8e-28 130.2 439 32.8
AL8G32700 Arabidopsis lyrata HOM05D006771 ORTHO05D008296 6.4e-28 129.4 143 50.3
AT5G56850 Arabidopsis thaliana HOM05D006771 ORTHO05D008296 6.4e-28 129.4 238 38.2
Thhalv10013398m.g Eutrema salsugineum HOM05D006771 ORTHO05D008296 1.4e-27 128.3 380 30.3
Hund06680 Selenicereus undatus HOM05D006771 ORTHO05D008296 1.4e-27 128.3 340 32.6
BcaB01g04422 Brassica carinata HOM05D006771 ORTHO05D008296 9.3e-27 125.6 415 30.1
Carub.0008s1731 Capsella rubella HOM05D006771 ORTHO05D008296 4.6e-26 123.2 413 30.3
CDE06G0351 Ceratophyllum demersum HOM05D006771 ORTHO05D008296 1.5e-24 118.2 208 36.1
SGA_v2.0_scaffold21G09363 Striga asiatica HOM05D006771 ORTHO05D008296 9.6e-24 115.5 177 40.1
SEGI_22775 Sequoiadendron giganteum HOM05D006771 ORTHO05D008296 4.8e-23 113.2 136 48.5
unitig_699.g19301 Utricularia gibba HOM05D006771 ORTHO05D008296 3.4e-21 107.1 305 28.9
CSS0032707 Camellia sinensis var. sinensis HOM05D006771 ORTHO05D008296 7.6e-21 105.9 329 31.3
MELO3C004623.2 Cucumis melo HOM05D006771 ORTHO05D008296 7.1e-19 99.4 279 30.5
Os05g0232200 Oryza sativa ssp. japonica HOM05D006771 ORTHO05D008296 5.1e-17 93.2 299 28.1
Pp3c15_7000 Physcomitrium patens HOM05D006771 ORTHO05D008296 5.1e-17 93.2 144 39.6
ATR0716G111 Amborella trichopoda HOM05D006771 ORTHO05D008296 2.5e-16 90.9 95 49.5
AagrBONN_evm.TU.Sc2ySwM_344.5001 Anthoceros agrestis HOM05D062329 ORTHO05D008296 5.6e-16 89.7 126 40.5
Pp3c9_2800 Physcomitrium patens HOM05D006771 ORTHO05D008296 9.6e-16 89.0 137 40.1
Pp3c9_2809 Physcomitrium patens HOM05D006771 ORTHO05D008296 9.6e-16 89.0 137 40.1
Zm00001eb345250 Zea mays HOM05D006771 ORTHO05D008296 4.8e-15 86.7 322 27.3
Haze_25906 Corylus avellana HOM05D006771 ORTHO05D008296 1.4e-14 85.1 67 59.7
EL10Ac8g19225 Beta vulgaris HOM05D006771 ORTHO05D008296 3.1e-14 84.0 253 29.6
Mapoly0003s0143 Marchantia polymorpha HOM05D006771 ORTHO05D008296 1.3e-12 78.6 128 34.4
AUR62033982 Chenopodium quinoa HOM05D006771 ORTHO05D008296 3.9e-09 67.0 379 25.3
CBR_g20330 Chara braunii HOM05D006771 ORTHO05D008296 5.1e-09 66.6 91 39.6
SEGI_24756 Sequoiadendron giganteum HOM05D006771 ORTHO05D008296 4.3e-08 63.5 97 36.1
Aa31LG3G12750 Aethionema arabicum HOM05D006771 ORTHO05D008296 5.3e-06 56.6 199 29.6


User provided reference genes

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