Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 3.9e-296 1020.8 536 100.0
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 5.6e-186 654.8 528 67.0
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.0e-163 580.9 535 60.6
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 6.2e-161 571.6 527 59.2
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 5.7e-154 548.5 533 56.8
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 4.2e-149 532.3 532 57.0
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 7.9e-148 528.1 555 54.8
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.0e-143 513.5 536 56.0
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 9.4e-141 504.6 488 58.2
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 7.9e-140 501.5 538 54.5
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 3.9e-139 499.2 517 54.5
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.7e-139 498.4 551 53.5
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.7e-139 498.4 551 53.5
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 9.1e-136 488.0 527 54.1
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 3.4e-135 486.1 441 59.4
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.7e-134 483.8 559 50.1
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.9e-132 474.9 525 53.0
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 9.1e-128 461.5 549 51.7
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-127 461.1 538 50.7
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-127 460.7 524 51.1
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 5.9e-127 458.8 532 49.1
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 5.9e-127 458.8 488 53.7
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.5e-125 454.1 561 48.7
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 4.7e-124 449.1 532 48.3
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.8e-120 437.2 518 50.4
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 7.0e-120 435.3 515 48.9
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.3e-118 431.0 518 49.4
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.7e-118 430.6 524 49.0
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.6e-116 424.1 498 48.2
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.0e-115 421.4 458 52.2
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.4e-115 421.0 486 50.8
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.8e-115 420.6 458 52.4
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 5.2e-115 419.1 463 51.6
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 4.4e-114 416.0 520 49.0
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 5.7e-114 415.6 519 45.7
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 7.5e-114 415.2 519 45.5
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.8e-113 413.3 452 50.0
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.7e-113 412.9 488 51.2
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 2.4e-112 410.2 535 46.5
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.1e-112 409.8 524 45.8
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.1e-112 409.8 479 50.3
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 9.1e-112 408.3 519 47.8
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 2.7e-111 406.8 520 49.2
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.0e-110 404.8 516 47.1
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 5.5e-109 399.1 538 45.9
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 3.6e-108 396.4 531 43.7
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.7e-106 389.0 466 48.7
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.1e-104 384.8 530 44.3
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.2e-103 381.3 537 44.7
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.2e-103 381.3 544 42.5
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.3e-102 377.1 538 44.6
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 2.9e-102 376.7 530 44.0
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 8.6e-102 375.2 549 43.4
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 2.1e-100 370.5 540 42.4
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.7e-97 360.9 542 41.5
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 3.7e-97 359.8 510 42.4
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 1.4e-96 357.8 537 42.6
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 6.6e-94 349.0 536 41.4
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.1e-91 340.1 529 41.8
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 4.0e-91 339.7 511 40.9
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 3.7e-89 333.2 547 39.1
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 2.7e-87 327.0 520 42.1
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 2.7e-87 327.0 524 40.1
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 2.3e-86 323.9 523 38.0
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.3e-85 320.1 500 39.4
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.1e-84 317.4 501 40.3
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.6e-84 316.6 500 39.2
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 8.1e-84 315.5 515 38.1
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 9.9e-82 308.5 522 38.1
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.2e-81 307.4 489 40.7
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.4e-80 303.9 496 37.9
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 9.2e-80 302.0 499 38.9
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.5e-77 294.7 488 36.9
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 4.3e-77 293.1 294 53.7
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 9.5e-77 292.0 504 37.1
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 2.8e-76 290.4 268 57.5
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 2.8e-76 290.4 285 55.1
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.7e-76 289.7 416 45.0
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.7e-76 289.7 517 36.6
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 4.7e-76 289.7 532 36.5
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 6.2e-76 289.3 516 38.6
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.8e-75 287.7 536 36.0
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.2e-74 285.0 484 37.4
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.3e-73 281.6 288 53.5
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 3.8e-73 280.0 517 36.6
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.1e-72 278.5 397 40.6
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.4e-72 278.1 528 36.6
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.4e-72 277.3 510 38.6
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.2e-71 275.0 501 36.3
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.1e-71 274.2 388 41.5
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.1e-71 274.2 491 36.3
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.7e-71 273.9 480 37.5
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.7e-70 271.2 505 36.6
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 1.7e-70 271.2 514 36.8
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.0e-70 270.4 537 35.2
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.9e-70 270.0 505 36.4
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.6e-68 264.6 508 35.0
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 6.2e-68 262.7 505 36.2
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.4e-67 261.5 533 33.4
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.4e-67 260.8 528 34.8
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 3.1e-67 260.4 477 36.1
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 9.0e-67 258.8 526 34.6
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 3.4e-66 256.9 474 35.4
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 7.6e-66 255.8 528 33.5
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 9.9e-66 255.4 506 34.8
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 9.9e-66 255.4 507 35.7
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.7e-65 254.6 512 34.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.2e-65 254.2 387 39.0
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 2.9e-65 253.8 501 35.1
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.8e-65 253.4 525 34.1
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 4.9e-65 253.1 417 37.4
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 7.1e-64 249.2 510 33.3
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 7.1e-64 249.2 510 33.3
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.2e-63 248.4 499 34.3
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.1e-63 247.7 298 47.7
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.7e-63 247.3 281 50.5
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 3.5e-63 246.9 483 36.6
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.3e-62 245.0 527 34.3
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 6.6e-62 242.7 493 32.9
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 3.3e-61 240.4 290 46.2
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 5.6e-61 239.6 516 33.3
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 7.3e-61 239.2 550 32.7
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.8e-60 237.3 491 35.0
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.4e-59 234.2 238 53.8
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.3e-59 233.0 256 54.3
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 7.6e-58 229.2 461 34.5
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.3e-57 228.4 438 34.7
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 2.9e-57 227.3 466 33.5
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 2.4e-56 224.2 426 34.0
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 4.2e-56 223.4 499 32.7
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 5.4e-56 223.0 506 33.4
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.4e-51 208.4 561 30.8
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.4e-51 208.4 270 47.8
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 5.3e-51 206.5 404 32.4
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 5.3e-51 206.5 251 49.0
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 3.2e-48 197.2 433 34.6
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 7.1e-48 196.1 561 31.0
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.8e-46 191.4 391 32.7
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 3.9e-46 190.3 423 31.2
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.9e-45 188.0 523 30.2
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 3.3e-45 187.2 424 32.1
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 4.3e-45 186.8 243 47.3
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 5.6e-45 186.4 272 44.1
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.8e-43 181.4 279 38.0
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 2.4e-43 181.0 522 28.7
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 6.9e-43 179.5 521 28.4
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.2e-42 178.7 297 39.1
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 2.0e-42 177.9 410 32.0
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.4e-42 177.2 523 28.5
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.7e-41 174.9 525 28.8
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.9e-41 174.1 409 31.1
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 3.8e-41 173.7 470 30.0
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.1e-40 172.2 471 30.1
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 5.5e-40 169.9 473 29.0
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.0e-38 165.6 257 41.6
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.9e-37 161.4 269 40.9
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 2.9e-33 147.5 160 49.4
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 9.3e-32 142.5 160 48.8
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 5.1e-30 136.7 489 27.4
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 8.8e-30 136.0 128 53.9
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 4.3e-29 133.7 280 32.9
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 4.3e-29 133.7 162 45.7
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 5.7e-29 133.3 249 37.3
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.7e-28 131.7 232 36.2
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.2e-26 125.6 259 32.8
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.2e-24 117.1 256 30.1
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.7e-23 114.4 227 36.1
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.8e-22 111.7 252 31.7
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 8.2e-20 102.8 118 47.5
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 7.7e-18 96.3 288 29.5
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 2.2e-17 94.7 169 39.6
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.2e-17 94.7 204 33.3
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 3.1e-11 74.3 140 34.3
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 2.6e-10 71.2 136 34.6


User provided reference genes

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