Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 2.5e-122 442.2 233 100.0
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 2.2e-110 402.5 232 91.4
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 4.6e-76 288.5 231 67.5
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 5.3e-64 248.4 243 59.7
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 6.9e-64 248.1 246 60.2
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 2.9e-62 242.7 238 57.1
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 1.1e-61 240.7 235 57.0
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 3.2e-61 239.2 244 57.0
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 4.2e-61 238.8 246 57.7
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 5.4e-61 238.4 240 57.1
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.6e-60 236.9 243 58.4
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 2.7e-60 236.1 256 55.5
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 4.6e-60 235.3 250 55.6
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.0e-59 234.2 239 56.5
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 1.8e-59 233.4 252 54.8
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 3.0e-59 232.6 241 53.5
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 3.9e-59 232.3 243 56.8
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 3.9e-59 232.3 240 58.3
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 5.1e-59 231.9 239 56.9
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 6.7e-59 231.5 243 55.1
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 6.7e-59 231.5 243 55.1
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 1.1e-58 230.7 246 52.8
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.1e-58 230.7 243 54.7
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 2.5e-58 229.6 238 54.6
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 4.3e-58 228.8 247 54.7
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 1.3e-57 227.3 212 59.0
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.6e-57 226.9 245 53.9
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 3.7e-57 225.7 263 53.2
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 8.1e-57 224.6 248 54.0
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 1.1e-56 224.2 239 55.2
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 1.8e-56 223.4 245 54.7
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.8e-56 223.4 240 55.4
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.4e-56 223.0 249 52.6
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.4e-56 223.0 249 52.6
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.4e-56 223.0 249 52.6
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.4e-56 223.0 249 52.6
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 4.0e-56 222.2 249 53.0
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 6.9e-56 221.5 249 53.0
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 9.0e-56 221.1 243 54.7
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 9.0e-56 221.1 253 51.8
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.5e-55 220.3 236 55.9
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 2.0e-55 219.9 248 51.2
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 3.4e-55 219.2 245 52.7
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 7.6e-55 218.0 249 53.0
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 1.3e-54 217.2 243 53.5
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 1.3e-54 217.2 242 54.1
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 2.2e-54 216.5 240 51.7
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 4.9e-54 215.3 249 52.2
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 1.9e-53 213.4 242 50.8
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 4.2e-53 212.2 242 50.4
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 4.2e-53 212.2 248 50.4
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 4.2e-53 212.2 242 54.1
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 7.1e-53 211.5 249 50.6
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 7.1e-53 211.5 245 53.1
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 9.3e-53 211.1 236 54.7
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 1.2e-52 210.7 233 50.6
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 2.1e-52 209.9 235 48.5
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 2.1e-52 209.9 242 51.7
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 4.6e-52 208.8 235 47.7
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 1.3e-51 207.2 257 50.6
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 1.8e-51 206.8 244 48.4
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 5.1e-51 205.3 237 47.7
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 5.1e-51 205.3 233 49.8
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 1.1e-50 204.1 177 62.1
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 2.5e-50 203.0 244 49.6
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 5.6e-50 201.8 261 49.4
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 5.6e-50 201.8 250 48.8
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 7.4e-50 201.4 235 47.7
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 4.8e-49 198.7 247 48.2
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 4.8e-49 198.7 247 48.2
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 6.2e-49 198.4 252 47.2
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 3.1e-48 196.1 250 46.8
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 6.9e-48 194.9 252 46.0
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 1.2e-47 194.1 237 47.3
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.2e-47 194.1 251 46.6
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 1.5e-47 193.7 245 46.5
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 7.6e-47 191.4 252 46.4
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 1.0e-46 191.0 249 45.4
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 1.7e-46 190.3 238 49.2
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 4.9e-46 188.7 252 44.4
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 4.9e-46 188.7 265 45.7
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 1.4e-45 187.2 242 47.5
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 5.5e-45 185.3 260 46.2
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 2.1e-44 183.3 239 45.6
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.8e-43 180.3 255 43.1
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 1.5e-42 177.2 231 49.4
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 1.5e-42 177.2 246 47.6
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 3.3e-42 176.0 252 46.0
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.3e-41 174.1 268 40.7
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.3e-41 174.1 268 40.7
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 1.3e-41 174.1 252 46.0
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 1.8e-40 170.2 254 42.1
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.1e-40 169.1 224 47.3
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 1.5e-39 167.2 240 46.7
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 1.9e-37 160.2 244 41.4
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 4.2e-37 159.1 107 75.7
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 4.2e-37 159.1 206 44.2
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 1.0e-35 154.5 237 44.3
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 1.3e-35 154.1 241 38.6
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 3.9e-35 152.5 228 46.1
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.2e-28 131.0 254 38.6
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 7.9e-28 128.3 100 64.0
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 2.3e-27 126.7 237 35.9
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 9.7e-26 121.3 233 39.5
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 1.3e-25 120.9 259 35.5
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.3e-25 120.9 242 37.6
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 4.8e-25 119.0 124 54.8
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 1.8e-24 117.1 118 51.7
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 6.9e-24 115.2 157 51.0
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 7.7e-23 111.7 244 32.4
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 2.9e-22 109.8 133 52.6
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.1e-21 107.8 225 35.6
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 5.5e-21 105.5 241 32.0
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 4.7e-20 102.4 245 33.1
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 3.9e-19 99.4 284 27.1
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.3e-14 84.3 112 36.6
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 4.7e-12 75.9 138 37.7
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 4.0e-11 72.8 121 36.4
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 4.0e-11 72.8 269 24.9
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 2.6e-10 70.1 209 34.4
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 4.8e-09 65.9 83 50.6
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.2e-07 61.2 41 63.4
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 2.9e-06 56.6 142 37.3


User provided reference genes

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