Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 4.3e-184 647.9 334 100.0
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 8.7e-129 464.2 335 72.2
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 7.0e-110 401.4 232 91.4
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 3.5e-109 399.1 330 63.3
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 5.0e-108 395.2 336 62.5
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 5.0e-108 395.2 335 63.0
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 5.5e-107 391.7 340 62.6
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 3.6e-106 389.0 322 62.4
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 3.6e-106 389.0 344 61.6
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 1.0e-105 387.5 330 62.4
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 1.5e-104 383.6 346 60.4
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 1.5e-104 383.6 335 59.7
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 2.0e-104 383.3 338 60.9
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 4.4e-104 382.1 330 63.0
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 1.7e-103 380.2 325 62.5
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 1.7e-103 380.2 325 62.5
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 2.8e-103 379.4 339 60.2
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.1e-102 377.5 336 62.5
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.4e-102 377.1 330 61.5
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 2.4e-102 376.3 329 61.7
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 3.1e-102 375.9 342 60.2
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 3.1e-102 375.9 335 58.8
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 9.1e-102 374.4 299 64.2
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 1.2e-101 374.0 332 59.6
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 1.2e-101 374.0 340 59.4
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 3.5e-101 372.5 330 60.3
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 4.5e-101 372.1 338 57.7
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 7.7e-101 371.3 343 58.6
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.3e-100 370.5 338 59.2
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 3.8e-100 369.0 328 61.0
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 5.0e-100 368.6 325 61.5
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 8.5e-100 367.9 342 58.5
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 1.5e-99 367.1 368 55.2
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 2.5e-99 366.3 332 59.6
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 3.2e-99 365.9 335 59.4
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 5.5e-99 365.2 330 59.4
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 7.2e-99 364.8 336 57.4
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 1.2e-98 364.0 343 56.3
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.6e-98 363.6 331 58.9
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 1.8e-97 360.1 337 57.9
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 5.2e-97 358.6 343 57.7
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 5.2e-97 358.6 335 58.5
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 6.8e-97 358.2 335 57.3
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 8.8e-97 357.8 326 59.5
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.5e-96 357.1 336 57.4
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.5e-96 357.1 336 57.4
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.5e-96 357.1 336 57.4
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.5e-96 357.1 336 57.4
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 7.5e-96 354.8 337 55.8
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 9.8e-96 354.4 336 57.7
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 1.7e-95 353.6 325 57.2
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 1.7e-95 353.6 337 55.5
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 1.7e-95 353.6 339 57.2
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 2.2e-95 353.2 336 57.4
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 3.7e-95 352.4 336 55.1
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 4.8e-95 352.1 338 56.5
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 4.8e-95 352.1 321 56.7
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 6.3e-95 351.7 333 57.7
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 1.1e-94 350.9 329 55.3
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.8e-94 350.1 327 54.7
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 1.8e-94 350.1 327 57.2
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 3.1e-94 349.4 271 66.4
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 3.1e-94 349.4 346 53.8
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 4.1e-94 349.0 327 55.0
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 1.6e-93 347.1 342 56.1
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 2.0e-93 346.7 334 55.4
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 3.5e-93 345.9 325 56.6
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 5.9e-93 345.1 335 55.5
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 7.7e-93 344.7 341 54.5
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.7e-92 343.6 324 54.3
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 5.0e-92 342.0 331 55.6
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 8.5e-92 341.3 339 53.7
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 2.5e-91 339.7 342 54.7
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 5.5e-91 338.6 340 54.7
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 2.1e-90 336.7 345 53.0
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 1.0e-89 334.3 343 52.2
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 8.8e-89 331.3 323 55.7
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 2.6e-88 329.7 318 58.2
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 3.4e-88 329.3 175 89.7
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 7.5e-88 328.2 327 52.6
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 1.4e-86 323.9 331 53.5
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 1.8e-86 323.6 334 53.3
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 3.1e-86 322.8 356 51.7
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 7.0e-86 321.6 345 52.2
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 9.2e-86 321.2 359 49.0
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 9.2e-86 321.2 359 49.0
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 5.9e-85 318.5 339 51.0
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 1.7e-84 317.0 277 61.0
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 2.9e-84 316.2 336 53.6
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 1.1e-83 314.3 331 52.0
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 1.2e-82 310.8 341 52.2
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 4.7e-82 308.9 341 52.2
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 1.4e-81 307.4 337 51.0
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 2.0e-80 303.5 325 52.0
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 3.4e-80 302.8 313 53.0
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 2.9e-79 299.7 298 53.4
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 5.6e-75 285.4 343 46.9
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 2.6e-72 276.6 192 69.8
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 4.3e-67 259.2 206 61.2
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 5.6e-67 258.8 322 48.4
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 6.2e-66 255.4 305 48.2
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 1.1e-65 254.6 326 44.5
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.0e-64 250.4 346 43.4
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 3.1e-57 226.5 331 41.4
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 8.9e-57 224.9 330 38.5
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 5.8e-56 222.2 333 43.5
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 2.9e-55 219.9 328 40.2
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 3.8e-55 219.5 347 40.9
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 5.6e-51 205.7 134 70.1
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 2.1e-50 203.8 202 49.5
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 2.8e-50 203.4 368 34.8
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.4e-49 201.1 316 39.6
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 2.0e-48 197.2 312 45.2
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 1.9e-43 180.6 131 64.9
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 6.9e-41 172.2 310 42.6
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 1.5e-40 171.0 205 51.2
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 1.6e-37 161.0 299 31.8
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 5.6e-35 152.5 110 65.5
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 4.8e-34 149.4 354 29.9
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 3.3e-27 126.7 143 43.4
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 6.9e-25 119.0 88 64.8
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.0e-24 117.5 247 36.0
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 2.5e-22 110.5 143 51.0
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 2.7e-21 107.1 133 50.4
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 6.0e-21 105.9 71 66.2
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 7.9e-21 105.5 77 67.5
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.7e-18 96.7 90 60.0
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 2.2e-15 87.4 132 32.6
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 3.8e-15 86.7 82 54.9
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 1.1e-11 75.1 122 37.7
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 9.7e-11 72.0 138 34.8
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 2.6e-08 63.9 58 55.2
Atru.chr7.1490 Acer truncatum HOM05D003525 ORTHO05D037886 2.9e-07 60.5 28 96.4


User provided reference genes

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