Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 4.0e-44 181.0 90 100.0
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 4.9e-18 94.4 78 65.4
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 4.9e-18 94.4 88 54.5
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 2.7e-16 88.6 88 53.4
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 1.0e-15 86.7 86 57.0
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 1.7e-15 85.9 88 50.0
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 2.3e-15 85.5 90 54.4
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 3.9e-15 84.7 88 56.8
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 1.1e-14 83.2 86 57.0
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 1.9e-14 82.4 90 53.3
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 4.3e-14 81.3 83 56.6
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 4.3e-14 81.3 83 56.6
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 4.7e-13 77.8 86 51.2
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 4.7e-13 77.8 67 62.7
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 6.2e-13 77.4 87 49.4
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 6.2e-13 77.4 88 47.7
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 6.2e-13 77.4 89 49.4
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 1.1e-12 76.6 88 51.1
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 4.0e-12 74.7 88 51.1
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 9.0e-12 73.6 65 61.5
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 1.5e-11 72.8 87 49.4
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 2.6e-11 72.0 87 48.3
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 3.4e-11 71.6 88 47.7
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 4.4e-11 71.2 87 48.3
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 5.8e-11 70.9 87 47.1
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 5.8e-11 70.9 88 46.6
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 7.6e-11 70.5 87 47.1
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 1.3e-10 69.7 86 47.7
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 1.7e-10 69.3 45 64.4
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 2.2e-10 68.9 95 43.2
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 2.2e-10 68.9 47 66.0
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 3.8e-10 68.2 93 47.3
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 4.9e-10 67.8 88 47.7
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 6.4e-10 67.4 42 69.0
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 6.4e-10 67.4 43 65.1
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 6.4e-10 67.4 87 44.8
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 1.1e-09 66.6 78 44.9
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 1.4e-09 66.2 94 42.6
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 1.4e-09 66.2 89 42.7
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 1.4e-09 66.2 90 44.4
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 1.9e-09 65.9 72 50.0
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 3.2e-09 65.1 80 46.2
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 3.2e-09 65.1 86 46.5
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 4.2e-09 64.7 91 45.1
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 5.4e-09 64.3 89 42.7
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 5.4e-09 64.3 89 42.7
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 7.1e-09 63.9 86 45.3
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 1.2e-08 63.2 72 45.8
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 2.1e-08 62.4 46 60.9
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 2.1e-08 62.4 46 60.9
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 2.7e-08 62.0 87 44.8
unitig_52.g17095 Utricularia gibba HOM05D008202 ORTHO05D010302 3.5e-08 61.6 47 59.6
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 4.6e-08 61.2 43 62.8
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 6.0e-08 60.8 87 43.7
Os01g0742766 Oryza sativa ssp. japonica HOM05D008202 ORTHO05D010302 6.0e-08 60.8 77 46.8
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 6.0e-08 60.8 44 61.4
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 1.0e-07 60.1 84 41.7
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 1.3e-07 59.7 42 59.5
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 3.0e-07 58.5 44 54.5
Zm00001eb371180 Zea mays HOM05D008202 ORTHO05D010302 3.0e-07 58.5 48 54.2
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 6.6e-07 57.4 37 64.9
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 6.6e-07 57.4 67 43.3
unitig_52.g17250 Utricularia gibba HOM05D008202 ORTHO05D010302 2.5e-06 55.5 47 53.2
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 3.3e-06 55.1 77 40.3
Mapoly0004s0023 Marchantia polymorpha HOM05D039400 ORTHO05D034304 3.3e-06 55.1 43 60.5
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 5.6e-06 54.3 73 37.0
PSO210G1322 Papaver somniferum HOM05D061259 ORTHO05D010302 5.6e-06 54.3 35 65.7
PSO210G2383 Papaver somniferum HOM05D061259 ORTHO05D010302 5.6e-06 54.3 35 65.7


User provided reference genes

Program Settings