Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 1.4e-278 962.2 466 100.0
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.6e-253 879.0 466 90.1
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 1.5e-251 872.5 466 89.9
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 3.7e-250 867.8 466 88.6
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 1.8e-249 865.5 466 87.1
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 5.5e-246 854.0 464 86.6
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.6e-245 852.4 464 86.2
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.6e-245 852.4 466 86.7
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.6e-245 852.4 466 86.7
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 6.0e-245 850.5 466 86.7
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 1.3e-244 849.4 467 86.5
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 3.9e-244 847.8 467 86.7
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 6.7e-244 847.0 466 85.0
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 8.7e-244 846.7 466 86.1
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 8.7e-244 846.7 466 86.3
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.1e-243 846.3 467 86.3
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.5e-243 845.9 466 86.7
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 1.9e-243 845.5 466 85.8
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 2.5e-243 845.1 467 86.5
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 4.3e-243 844.3 464 86.4
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 2.8e-242 841.6 466 85.8
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 3.7e-242 841.3 467 85.4
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 1.8e-241 839.0 492 81.9
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 4.1e-241 837.8 466 85.6
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 5.3e-241 837.4 491 82.1
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 6.9e-241 837.0 466 84.8
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.2e-240 836.3 474 84.0
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 2.0e-240 835.5 466 84.5
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.6e-240 835.1 474 84.2
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 4.5e-240 834.3 466 84.5
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 4.5e-240 834.3 466 85.8
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 5.9e-240 833.9 466 84.8
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 7.7e-240 833.6 466 85.8
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 7.7e-240 833.6 466 85.2
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.3e-239 832.8 466 84.5
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.2e-239 832.0 466 84.5
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.9e-239 831.6 466 85.8
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 3.8e-239 831.2 467 85.0
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.8e-239 831.2 474 83.5
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 5.0e-239 830.9 465 85.4
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 5.0e-239 830.9 467 84.4
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 6.5e-239 830.5 466 83.7
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 6.5e-239 830.5 467 84.4
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 6.5e-239 830.5 467 85.0
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.9e-238 828.9 474 83.3
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 2.5e-238 828.6 467 84.6
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 3.2e-238 828.2 467 84.2
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 3.2e-238 828.2 464 84.7
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 7.2e-238 827.0 467 84.8
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 1.6e-237 825.9 467 84.2
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.6e-237 825.9 466 84.1
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 1.4e-236 822.8 467 83.9
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 2.0e-235 818.9 492 81.1
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 2.0e-235 818.9 492 81.1
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 2.5e-235 818.5 466 83.5
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 3.7e-234 814.7 466 83.0
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 4.8e-234 814.3 467 83.3
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.2e-234 813.5 500 78.8
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 8.2e-234 813.5 462 83.8
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 8.2e-234 813.5 464 83.4
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 1.4e-233 812.8 467 82.2
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 1.4e-233 812.8 467 82.2
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.8e-233 812.4 466 82.4
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 4.1e-233 811.2 467 82.2
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 4.1e-233 811.2 467 82.2
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 5.3e-233 810.8 467 82.0
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 6.9e-233 810.4 467 81.6
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 6.9e-233 810.4 467 81.8
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 6.9e-233 810.4 467 81.8
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.2e-232 809.7 464 81.9
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 1.5e-232 809.3 467 82.2
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.5e-232 809.3 466 81.3
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 2.0e-232 808.9 468 82.3
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.0e-232 808.9 466 82.0
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.0e-232 808.9 466 82.0
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.6e-232 808.5 466 80.5
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.0e-231 806.6 466 83.3
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 2.2e-231 805.4 466 82.4
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 2.9e-231 805.1 467 81.4
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.9e-231 805.1 466 81.5
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 8.5e-231 803.5 469 81.0
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 8.5e-231 803.5 469 81.2
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 2.5e-230 802.0 467 82.2
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 9.4e-230 800.0 467 81.6
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 9.4e-230 800.0 467 81.2
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.6e-229 798.1 476 80.0
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 4.7e-229 797.7 466 81.1
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 7.9e-229 797.0 467 80.9
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 7.9e-229 797.0 467 80.9
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 7.9e-229 797.0 471 81.1
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 1.4e-228 796.2 467 80.9
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 3.0e-228 795.0 464 82.1
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 3.9e-228 794.7 464 81.5
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 5.1e-228 794.3 464 81.5
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 1.3e-226 789.6 464 81.0
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 3.1e-225 785.0 466 80.7
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 4.1e-225 784.6 466 80.5
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 4.1e-225 784.6 474 78.7
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 9.1e-225 783.5 474 78.7
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 1.5e-224 782.7 470 80.2
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 7.7e-224 780.4 466 80.3
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.0e-223 780.0 466 80.3
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 2.2e-223 778.9 470 79.8
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 6.5e-223 777.3 466 80.3
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 1.1e-222 776.5 470 79.8
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 4.2e-222 774.6 461 78.1
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 5.5e-222 774.2 463 78.8
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 3.3e-219 765.0 467 77.5
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 2.8e-218 761.9 463 77.3
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.4e-217 759.6 467 77.9
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 1.8e-217 759.2 467 76.7
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 1.8e-217 759.2 466 78.5
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 4.1e-217 758.1 466 79.8
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 1.6e-216 756.1 468 78.0
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 3.5e-216 755.0 464 78.9
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 4.5e-216 754.6 466 78.8
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 1.6e-213 746.1 462 76.2
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 1.6e-213 746.1 416 83.7
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 3.6e-213 745.0 462 76.4
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 1.4e-212 743.0 422 82.2
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 5.2e-212 741.1 499 73.3
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 6.8e-212 740.7 467 78.4
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 1.5e-211 739.6 462 76.0
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 5.7e-211 737.6 415 84.6
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 5.7e-211 737.6 419 82.8
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 3.7e-210 734.9 529 69.0
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.1e-209 733.4 521 71.2
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 1.4e-209 733.0 466 75.5
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 4.1e-209 731.5 496 73.2
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 9.1e-209 730.3 466 75.3
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 5.9e-208 727.6 466 75.1
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 1.3e-207 726.5 441 78.2
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.3e-207 726.5 416 82.0
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 8.5e-207 723.8 441 78.0
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 1.7e-202 709.5 467 73.9
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 4.1e-201 704.9 466 75.1
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 4.2e-198 694.9 462 72.5
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 5.4e-193 677.9 469 74.4
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 1.0e-191 673.7 382 84.3
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.2e-189 666.8 462 71.4
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 1.6e-189 666.4 467 70.9
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 2.8e-189 665.6 471 68.6
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 8.0e-189 664.1 466 69.5
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 2.3e-183 646.0 442 72.6
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 2.5e-174 615.9 326 88.3
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 4.0e-172 608.6 326 86.8
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 2.9e-170 602.4 507 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 4.6e-168 595.1 432 65.0
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 2.5e-166 589.3 420 65.5
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 1.1e-150 537.3 455 58.5
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 1.6e-149 533.5 411 62.5
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 4.8e-141 505.4 326 75.2
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 4.9e-138 495.4 293 81.2
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 2.4e-132 476.5 289 79.9
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 3.1e-132 476.1 291 78.7
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 6.5e-130 468.4 265 81.1
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 1.2e-128 464.2 288 78.8
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 9.7e-118 427.9 231 84.8
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 1.0e-103 381.3 246 75.2
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 5.4e-92 342.4 196 80.1
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.1e-63 246.9 150 78.7
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 4.0e-55 219.9 442 34.2
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 4.1e-52 209.9 413 34.4
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.8e-46 189.5 203 52.7
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 2.4e-39 167.5 139 59.0
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 2.2e-37 161.0 82 86.6
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 2.4e-36 157.5 109 67.9
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 1.9e-28 131.3 86 73.3
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 3.8e-21 107.1 58 81.0
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.4e-21 105.9 143 48.3
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 1.4e-20 105.1 60 81.7
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 3.3e-17 94.0 149 36.9
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 1.1e-07 62.4 47 61.7
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 1.2e-06 58.9 37 73.0


User provided reference genes

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