Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.146 Acer truncatum HOM05D003067 ORTHO05D009378 4.2e-203 711.1 345 100.0
Ciclev10009097m.g Citrus clementina HOM05D003067 ORTHO05D009378 3.6e-109 399.1 285 68.1
Cfa020848 Carpinus fangiana HOM05D003067 ORTHO05D007251 4.4e-91 339.0 276 60.1
Haze_19237 Corylus avellana HOM05D003067 ORTHO05D009378 4.4e-91 339.0 317 54.3
Thecc.09G033900 Theobroma cacao HOM05D003067 ORTHO05D009378 3.7e-90 335.9 289 58.1
QL02p092630 Quercus lobata HOM05D003067 ORTHO05D009378 2.3e-84 316.6 296 55.7
RcHm_v2.0_Chr2g0085991 Rosa chinensis HOM05D003067 ORTHO05D009378 2.3e-84 316.6 288 54.9
CiPaw.16G115000 Carya illinoinensis HOM05D003067 ORTHO05D009378 1.2e-83 314.3 288 55.9
Gohir.D07G030100 Gossypium hirsutum HOM05D003067 ORTHO05D009378 5.7e-83 312.0 290 54.8
FvH4_1g01190 Fragaria vesca HOM05D003067 ORTHO05D009378 1.3e-82 310.8 286 53.8
TWI34G0508 Tripterygium wilfordii HOM05D003067 ORTHO05D009378 1.7e-82 310.5 296 54.4
Gorai.001G031300 Gossypium raimondii HOM05D003067 ORTHO05D009378 2.2e-82 310.1 291 54.6
Gohir.A07G026200 Gossypium hirsutum HOM05D003067 ORTHO05D009378 4.9e-82 308.9 290 54.5
Prupe.7G260000 Prunus persica HOM05D003067 ORTHO05D009378 1.8e-81 307.0 278 55.0
FAN28G0267 Fragaria x ananassa HOM05D003067 ORTHO05D009378 2.7e-80 303.1 286 52.4
Potri.006G187500 Populus trichocarpa HOM05D003067 ORTHO05D009378 2.8e-77 293.1 295 50.2
Potri.018G110300 Populus trichocarpa HOM05D003067 ORTHO05D009378 5.7e-75 285.4 292 50.0
Medtr2g450220 Medicago truncatula HOM05D003067 ORTHO05D009378 7.5e-75 285.0 292 49.7
Nn2g12305 Nelumbo nucifera HOM05D003067 ORTHO05D009378 7.5e-75 285.0 289 51.2
Hma1.2p1_0028F.1_g017380 Hydrangea macrophylla HOM05D003067 ORTHO05D009378 6.4e-74 282.0 278 52.9
Dinv41400 Davidia involucrata HOM05D003067 ORTHO05D009378 1.1e-73 281.2 268 52.2
CANSAT11G2322 Cannabis sativa HOM05D003067 ORTHO05D009378 2.4e-73 280.0 291 51.2
COL.COLO4_18774 Corchorus olitorius HOM05D003067 ORTHO05D009378 1.0e-71 274.6 274 51.5
GSVIVG01003733001 Vitis vinifera HOM05D003067 ORTHO05D009378 1.7e-71 273.9 272 50.7
Eucgr.C00366 Eucalyptus grandis HOM05D003067 ORTHO05D009378 2.2e-66 256.9 290 46.2
PGR142G2789 Punica granatum HOM05D003067 ORTHO05D009378 1.6e-64 250.8 297 46.8
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 4.3e-62 242.7 207 56.5
ClCG02G017140 Citrullus lanatus HOM05D003067 ORTHO05D009378 1.6e-61 240.7 301 43.9
Sabra18G0093300 Salix brachista HOM05D003067 ORTHO05D009378 1.6e-61 240.7 369 38.8
MBI14_g05269_MAGBIO Magnolia biondii HOM05D003067 ORTHO05D009378 6.2e-61 238.8 283 45.2
Nitab4.5_0001478g0120 Nicotiana tabacum HOM05D003067 ORTHO05D009378 6.2e-61 238.8 290 45.5
CsaV3_2G003640 Cucumis sativus L. HOM05D003067 ORTHO05D009378 1.1e-60 238.0 281 44.5
Oeu021253.1 Olea europaea HOM05D003067 ORTHO05D009378 1.8e-60 237.3 284 45.4
CAN.G551.28 Capsicum annuum HOM05D003067 ORTHO05D009378 2.3e-60 236.9 287 43.6
Aqoxy7G03467 Aquilegia oxysepala HOM05D003067 ORTHO05D009378 8.9e-60 235.0 289 46.7
Duzib150G0133 Durio zibethinus HOM05D003067 ORTHO05D009378 8.9e-60 235.0 225 52.4
Actinidia38680 Actinidia chinensis HOM05D003067 ORTHO05D009378 5.8e-59 232.3 253 45.1
CDE06G1077 Ceratophyllum demersum HOM05D003067 ORTHO05D009378 5.8e-59 232.3 285 41.4
Manes.14G112000 Manihot esculenta HOM05D003067 ORTHO05D009378 7.5e-59 231.9 224 50.0
MELO3C004431.2 Cucumis melo HOM05D003067 ORTHO05D009378 5.4e-57 225.7 307 41.0
Thhalv10025917m.g Eutrema salsugineum HOM05D003067 ORTHO05D009378 5.4e-57 225.7 279 42.7
Os06g0183700 Oryza sativa ssp. japonica HOM05D003067 ORTHO05D009378 4.6e-56 222.6 287 40.4
Cc06_g15260 Coffea canephora HOM05D003067 ORTHO05D009378 7.8e-56 221.9 279 44.1
BcaNung03423 Brassica carinata HOM05D003067 ORTHO05D009378 3.9e-55 219.5 280 42.5
AL7G21080 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 5.1e-55 219.2 283 42.4
Peaxi162Scf00108g00714 Petunia axillaris HOM05D003067 ORTHO05D009378 5.1e-55 219.2 292 44.5
Carub.0007s0954 Capsella rubella HOM05D003067 ORTHO05D009378 8.6e-55 218.4 282 41.8
A01p07190 Brassica napus HOM05D003067 ORTHO05D009378 7.3e-54 215.3 282 41.1
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 7.3e-54 215.3 286 44.4
Sopen12g005120 Solanum pennellii HOM05D003067 ORTHO05D009378 7.3e-54 215.3 243 46.9
Sp7g28870 Schrenkiella parvula HOM05D003067 ORTHO05D009378 2.1e-53 213.8 285 42.5
ATR1153G020 Amborella trichopoda HOM05D003067 ORTHO05D009378 8.1e-53 211.8 279 39.4
BraA01t00670Z Brassica rapa HOM05D003067 ORTHO05D009378 8.1e-53 211.8 282 40.8
Lj6g0006451 Lotus japonicus HOM05D003067 ORTHO05D009378 8.1e-53 211.8 283 43.5
Solyc12g010230.2 Solanum lycopersicum HOM05D003067 ORTHO05D009378 2.4e-52 210.3 250 46.0
C01p07950 Brassica napus HOM05D003067 ORTHO05D009378 3.1e-52 209.9 284 40.5
BolC1t00782H Brassica oleracea HOM05D003067 ORTHO05D009378 3.1e-52 209.9 284 40.5
MSTRG.6118 Avicennia marina HOM05D003067 ORTHO05D009378 5.2e-52 209.1 290 39.3
BcaC09g51887 Brassica carinata HOM05D003067 ORTHO05D009378 6.8e-52 208.8 284 40.8
FAN19G0469 Fragaria x ananassa HOM05D003067 ORTHO05D009378 2.9e-50 203.4 174 57.5
HanXRQChr05g0133261 Helianthus annuus HOM05D003067 ORTHO05D009378 2.9e-50 203.4 281 43.1
Zm00001eb374750 Zea mays HOM05D003067 ORTHO05D009378 2.9e-50 203.4 278 40.6
THA.LOC104803568 Tarenaya hassleriana HOM05D003067 ORTHO05D009378 4.1e-49 199.5 276 39.9
HPP92_017493 Vanilla planifolia HOM05D003067 ORTHO05D009378 1.6e-48 197.6 283 39.2
Cpa.g.sc46.125 Carica papaya HOM05D003067 ORTHO05D009378 1.3e-47 194.5 199 51.3
Nitab4.5_0002315g0060 Nicotiana tabacum HOM05D003067 ORTHO05D009378 3.9e-47 193.0 278 40.3
Migut.J01329 Erythranthe guttata HOM05D003067 ORTHO05D009378 1.2e-45 188.0 271 40.6
AT4G30993 Arabidopsis thaliana HOM05D003067 ORTHO05D009378 1.4e-41 174.5 209 44.5
Oeu043497.1 Olea europaea HOM05D003067 ORTHO05D009378 1.4e-41 174.5 303 37.0
Oeu043496.1 Olea europaea HOM05D003067 ORTHO05D009378 4.2e-41 172.9 303 36.3
Lsat_1_v5_gn_8_59821 Lactuca sativa HOM05D003067 ORTHO05D009378 3.0e-39 166.8 285 36.8
SGA_v2.0_scaffold265G46124 Striga asiatica HOM05D003067 ORTHO05D009378 3.0e-39 166.8 276 38.4
MD02G1010100 Malus domestica HOM05D003067 ORTHO05D009378 1.3e-37 161.4 198 44.9
SalBow1G0452 Salvia bowleyana HOM05D003067 ORTHO05D009378 2.4e-36 157.1 283 33.9
CARHR238890 Cardamine hirsuta HOM05D003067 ORTHO05D009378 7.6e-35 152.1 171 47.4
vmacro06093 Vaccinium macrocarpon HOM05D003067 ORTHO05D009378 1.6e-32 144.4 261 38.3
PGSC0003DMG400007894 Solanum tuberosum HOM05D003067 ORTHO05D009378 6.0e-32 142.5 175 45.1
DCAR_014819 Daucus carota HOM05D003067 ORTHO05D009378 1.0e-31 141.7 252 36.1
Glyma.15G205500 Glycine max HOM05D003067 ORTHO05D009378 4.0e-28 129.8 221 35.3
Hma1.2p1_2223F.1_g317430 Hydrangea macrophylla HOM05D001033 ORTHO05D005438 1.6e-24 117.9 62 95.2
RcHm_v2.0_CPg0502161 Rosa chinensis HOM05D001033 ORTHO05D005438 1.6e-24 117.9 62 95.2
EL10As12g24023 Beta vulgaris HOM05D001033 ORTHO05D005438 2.1e-24 117.5 66 86.4
EL10As1g23050 Beta vulgaris HOM05D001033 ORTHO05D005438 2.1e-24 117.5 66 86.4
CAN.G397.97 Capsicum annuum HOM05D001033 ORTHO05D005438 3.5e-24 116.7 62 93.5
CAN.G835.10 Capsicum annuum HOM05D001033 ORTHO05D005438 3.5e-24 116.7 62 93.5
PGR111G0123 Punica granatum HOM05D001033 ORTHO05D005438 4.6e-24 116.3 62 91.9
Gohir.1Z049599 Gossypium hirsutum HOM05D001033 ORTHO05D005438 6.0e-24 115.9 62 93.5
Gohir.A10G087950 Gossypium hirsutum HOM05D001033 ORTHO05D005438 6.0e-24 115.9 62 93.5
Glyma.13G068600 Glycine max HOM05D001033 ORTHO05D005438 7.9e-24 115.5 62 90.3
Lalb_Chr03g0039391 Lupinus albus HOM05D001033 ORTHO05D005438 7.9e-24 115.5 62 91.9
Lalb_Chr07g0192301 Lupinus albus HOM05D001033 ORTHO05D005438 7.9e-24 115.5 62 91.9
Peaxi162Scf00334g01211 Petunia axillaris HOM05D001033 ORTHO05D002045 7.9e-24 115.5 62 91.9
Phvul.011G056516 Phaseolus vulgaris HOM05D001033 ORTHO05D005438 7.9e-24 115.5 62 90.3
QL93p0270_0001 Quercus lobata HOM05D001033 ORTHO05D005438 7.9e-24 115.5 62 91.9
VMungo0498G0001 Vigna mungo HOM05D001033 ORTHO05D005438 7.9e-24 115.5 62 90.3
Gohir.D01G102268 Gossypium hirsutum HOM05D001033 ORTHO05D005438 1.0e-23 115.2 99 63.6
Nn010s41425 Nelumbo nucifera HOM05D001033 ORTHO05D005438 1.0e-23 115.2 93 67.7
C02p43490 Brassica napus HOM05D001033 ORTHO05D005438 1.8e-23 114.4 68 82.4
C09p40500 Brassica napus HOM05D001033 ORTHO05D005438 1.8e-23 114.4 68 82.4
BolSC45t60863H Brassica oleracea HOM05D001033 ORTHO05D005438 1.8e-23 114.4 68 82.4
BolSC45t60948H Brassica oleracea HOM05D001033 ORTHO05D005438 1.8e-23 114.4 68 82.4
BolSC46t60995H Brassica oleracea HOM05D001033 ORTHO05D005438 1.8e-23 114.4 68 82.4
BolSC46t61040H Brassica oleracea HOM05D001033 ORTHO05D005438 1.8e-23 114.4 68 82.4
BolSC47t61102H Brassica oleracea HOM05D001033 ORTHO05D005438 1.8e-23 114.4 68 82.4
BraSC25t45843Z Brassica rapa HOM05D001033 ORTHO05D005438 1.8e-23 114.4 68 82.4
BraSC25t45872Z Brassica rapa HOM05D001033 ORTHO05D005438 1.8e-23 114.4 68 82.4
BraSC58t46415Z Brassica rapa HOM05D001033 ORTHO05D005438 1.8e-23 114.4 68 82.4
BraSC59t46597Z Brassica rapa HOM05D001033 ORTHO05D005438 1.8e-23 114.4 68 82.4
DCAR_032489 Daucus carota HOM05D001033 ORTHO05D005438 1.8e-23 114.4 62 90.3
Eucgr.A02745 Eucalyptus grandis HOM05D001033 ORTHO05D005438 2.3e-23 114.0 62 91.9
Medtr4g051245 Medicago truncatula HOM05D001033 ORTHO05D005438 2.3e-23 114.0 62 90.3
ATCG00440 Arabidopsis thaliana HOM05D001033 ORTHO05D005438 3.0e-23 113.6 68 82.4
CARHR282060 Cardamine hirsuta HOM05D001033 ORTHO05D005438 3.0e-23 113.6 68 82.4
Thhalv10010825m.g Eutrema salsugineum HOM05D001033 ORTHO05D005438 3.0e-23 113.6 68 82.4
Potri.013G163000 Populus trichocarpa HOM05D001033 ORTHO05D005438 3.0e-23 113.6 62 90.3
BolC7t41722H Brassica oleracea HOM05D001033 ORTHO05D005438 3.9e-23 113.2 62 90.3
LjContig00318g0006081 Lotus japonicus HOM05D001033 ORTHO05D005438 3.9e-23 113.2 61 90.2
SalBow1G1818 Salvia bowleyana HOM05D001033 ORTHO05D005438 3.9e-23 113.2 62 88.7
HanXRQChr00c0345g0573911 Helianthus annuus HOM05D001033 ORTHO05D005438 6.7e-23 112.5 61 91.8
HanXRQChr00c0702g0576861 Helianthus annuus HOM05D001033 ORTHO05D002045 6.7e-23 112.5 61 91.8
HanXRQChr00c0759g0577221 Helianthus annuus HOM05D001033 ORTHO05D005438 6.7e-23 112.5 61 91.8
HanXRQChr02g0044941 Helianthus annuus HOM05D001033 ORTHO05D002045 6.7e-23 112.5 61 91.8
HanXRQChr07g0201001 Helianthus annuus HOM05D001033 ORTHO05D002045 6.7e-23 112.5 61 91.8
HanXRQChr08g0210311 Helianthus annuus HOM05D001033 ORTHO05D002045 6.7e-23 112.5 61 91.8
HanXRQChr10g0283501 Helianthus annuus HOM05D001033 ORTHO05D002045 6.7e-23 112.5 61 91.8
HanXRQChr10g0289221 Helianthus annuus HOM05D001033 ORTHO05D002045 6.7e-23 112.5 61 91.8
HanXRQChr11g0326771 Helianthus annuus HOM05D001033 ORTHO05D002045 6.7e-23 112.5 61 91.8
HanXRQCPg0579981 Helianthus annuus HOM05D001033 ORTHO05D002045 6.7e-23 112.5 61 91.8
MD02G1010000 Malus domestica HOM05D003067 ORTHO05D009378 6.7e-23 112.5 95 61.1
PSO548G0108 Papaver somniferum HOM05D001033 ORTHO05D005438 6.7e-23 112.5 62 90.3
AL2G20690 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 8.7e-23 112.1 68 80.9
AL2G21100 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 8.7e-23 112.1 68 80.9
AL2G21480 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 8.7e-23 112.1 68 80.9
C04p22580 Brassica napus HOM05D001033 ORTHO05D005438 1.5e-22 111.3 67 85.1
Gohir.A09G102300 Gossypium hirsutum HOM05D001033 ORTHO05D005438 2.5e-22 110.5 99 62.6
Gohir.D04G084000 Gossypium hirsutum HOM05D001033 ORTHO05D005438 3.3e-22 110.2 62 90.3
HanXRQChr11g0348981 Helianthus annuus HOM05D001033 ORTHO05D005438 3.3e-22 110.2 61 88.5
Oeu028781.1 Olea europaea HOM05D001033 ORTHO05D005438 3.3e-22 110.2 62 87.1
BolC7t41667H Brassica oleracea HOM05D001033 ORTHO05D005438 5.6e-22 109.4 68 79.4
Gohir.D07G155048 Gossypium hirsutum HOM05D001033 ORTHO05D005438 5.6e-22 109.4 61 88.5
HanXRQChr02g0041511 Helianthus annuus HOM05D001033 ORTHO05D002045 9.6e-22 108.6 59 91.5
HanXRQChr04g0118141 Helianthus annuus HOM05D001033 ORTHO05D005438 3.7e-21 106.7 58 91.4
Nn4g22664 Nelumbo nucifera HOM05D001033 ORTHO05D005438 1.4e-17 94.7 75 68.0
Nitab4.5_0001478g0160 Nicotiana tabacum HOM05D003067 ORTHO05D009378 7.1e-17 92.4 154 33.1
Gohir.D12G053450 Gossypium hirsutum HOM05D001033 ORTHO05D005438 1.6e-16 91.3 62 79.0
Nitab4.5_0000525g0300 Nicotiana tabacum HOM05D003067 ORTHO05D009378 5.1e-15 86.3 193 32.1
CSS0014498 Camellia sinensis var. sinensis HOM05D003067 ORTHO05D009378 6.7e-15 85.9 127 37.0
SGA_v2.0_scaffold214G42289 Striga asiatica HOM05D003067 ORTHO05D009378 2.5e-14 84.0 232 27.6
BNapus_Darmor_BZH_scaffold_253p00180 Brassica napus HOM05D001033 ORTHO05D005438 8.2e-13 79.0 41 90.2
Medtr3g035740 Medicago truncatula HOM05D001033 ORTHO05D005438 8.2e-13 79.0 41 90.2
BNapus_Darmor_BZH_scaffold_287p00100 Brassica napus HOM05D001033 ORTHO05D005438 2.4e-12 77.4 42 85.7
PGSC0003DMG400015304 Solanum tuberosum HOM05D001033 ORTHO05D005438 5.3e-12 76.3 41 92.7
AL6G46700 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 6.9e-12 75.9 101 39.6
Gorai.013G158200 Gossypium raimondii HOM05D001033 ORTHO05D005438 1.2e-11 75.1 63 63.5
GSVIVG01003739001 Vitis vinifera HOM05D003067 ORTHO05D009378 1.2e-11 75.1 50 70.0
AL2G22600 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 4.5e-11 73.2 101 38.6
Nitab4.5_0005637g0100 Nicotiana tabacum HOM05D001033 ORTHO05D002045 1.0e-10 72.0 41 85.4
Oeu015831.1 Olea europaea HOM05D001033 ORTHO05D005438 1.0e-10 72.0 41 85.4
SMO086G0042 Selaginella moellendorffii HOM05D001033 ORTHO05D005438 2.2e-10 70.9 60 56.7
SMO086G0053 Selaginella moellendorffii HOM05D001033 ORTHO05D005438 2.2e-10 70.9 60 56.7
Lalb_Chr01g0022761 Lupinus albus HOM05D001033 ORTHO05D005438 3.8e-10 70.1 41 80.5
Gohir.D05G268250 Gossypium hirsutum HOM05D001033 ORTHO05D005438 1.1e-09 68.6 81 50.6
Aa31LG2G19330 Aethionema arabicum HOM05D003067 ORTHO05D009378 1.9e-09 67.8 116 37.1
Gorai.009G280700 Gossypium raimondii HOM05D001033 ORTHO05D005438 2.5e-09 67.4 93 46.2
SGA_v2.0_scaffold113G31772 Striga asiatica HOM05D003067 ORTHO05D009378 2.5e-09 67.4 170 27.6
Migut.D01355 Erythranthe guttata HOM05D001033 ORTHO05D005438 2.1e-08 64.3 52 65.4
Nitab4.5_0008862g0010 Nicotiana tabacum HOM05D003067 ORTHO05D009378 3.6e-08 63.5 66 40.9
Potri.007G062001 Populus trichocarpa HOM05D001325 ORTHO05D005438 8.8e-07 58.9 65 41.5
Gorai.005G120500 Gossypium raimondii HOM05D001033 ORTHO05D005438 1.5e-06 58.2 61 52.5
Phvul.005G060800 Phaseolus vulgaris HOM05D001033 ORTHO05D005438 1.9e-06 57.8 62 53.2
SEGI_40030 Sequoiadendron giganteum HOM05D023718 ORTHO05D009378 2.5e-06 57.4 136 30.9
Pp3c21_8460 Physcomitrium patens HOM05D001325 ORTHO05D005438 3.3e-06 57.0 59 45.8
Gohir.D02G106150 Gossypium hirsutum HOM05D001033 ORTHO05D005438 4.3e-06 56.6 61 54.1


User provided reference genes

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