Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 4.0e-95 351.7 210 100.0
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 4.9e-61 238.4 214 68.7
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 6.6e-58 228.0 211 63.0
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.7e-53 213.4 211 60.2
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 8.4e-53 211.1 211 62.1
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.1e-52 210.7 211 57.8
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 3.9e-50 202.2 212 56.6
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.9e-49 199.9 212 62.7
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 9.6e-49 197.6 211 59.7
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 1.8e-47 193.4 211 58.3
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 9.0e-47 191.0 212 56.1
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 2.2e-45 186.4 211 55.5
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 2.2e-45 186.4 214 59.8
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 2.9e-45 186.0 213 55.4
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 3.5e-43 179.1 213 58.7
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 3.5e-43 179.1 211 52.6
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.3e-42 177.2 214 57.9
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.9e-41 173.3 220 58.2
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 2.5e-41 172.9 172 59.3
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 7.4e-41 171.4 225 51.1
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 9.6e-41 171.0 212 56.6
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.1e-40 169.9 213 55.9
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.1e-40 169.9 222 55.9
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.8e-40 169.5 214 57.0
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.1e-39 167.5 212 53.8
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.1e-39 167.5 235 47.7
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 9.0e-39 164.5 215 53.5
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-38 164.1 212 59.0
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.5e-38 163.7 216 50.9
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 4.5e-38 162.2 211 60.2
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 4.5e-38 162.2 220 48.6
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 7.6e-38 161.4 209 52.6
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.9e-37 158.7 215 50.2
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.9e-37 158.7 215 50.2
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 1.1e-36 157.5 212 52.4
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.1e-36 157.5 211 49.8
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.4e-36 157.1 211 48.8
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 3.2e-36 156.0 211 50.7
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 1.0e-34 151.0 173 60.7
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.3e-34 150.6 211 46.0
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.7e-34 148.3 219 52.1
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.7e-34 148.3 219 53.0
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 1.1e-33 147.5 219 52.5
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.5e-33 147.1 211 48.3
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.3e-33 146.0 230 51.7
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.3e-33 146.0 205 52.2
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.3e-33 146.0 215 50.2
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.7e-33 145.2 219 52.5
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 5.7e-33 145.2 216 54.2
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 7.4e-33 144.8 213 47.9
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 1.6e-32 143.7 215 52.1
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.6e-32 143.7 209 44.0
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.6e-32 143.7 211 46.0
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 1.6e-32 143.7 214 50.5
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.1e-32 143.3 211 51.7
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 2.8e-32 142.9 212 49.5
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.8e-32 142.9 212 46.2
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 3.7e-32 142.5 210 46.7
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 4.8e-32 142.1 213 47.9
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 6.2e-32 141.7 220 43.6
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 8.2e-32 141.4 208 47.6
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 4.1e-31 139.0 212 46.7
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 5.3e-31 138.7 215 48.8
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.5e-30 137.1 217 49.8
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 4.5e-30 135.6 173 53.8
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.2e-29 133.3 212 44.8
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 8.4e-29 131.3 217 45.2
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.1e-28 131.0 230 48.7
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.4e-28 130.6 213 45.5
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.9e-28 130.2 214 48.6
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.9e-28 130.2 212 48.6
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 5.5e-28 128.6 210 51.0
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 5.5e-28 128.6 176 55.1
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 7.1e-28 128.3 223 45.3
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 7.1e-28 128.3 213 43.7
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.7e-27 126.3 215 44.2
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 3.5e-27 125.9 143 57.3
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 4.6e-27 125.6 212 49.1
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 6.1e-27 125.2 213 47.4
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 7.9e-27 124.8 212 42.9
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.0e-26 124.4 219 47.9
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.0e-26 124.4 215 48.8
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.8e-26 123.6 215 42.8
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 1.8e-26 123.6 215 42.8
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 1.8e-26 123.6 215 42.8
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.8e-26 123.6 217 49.3
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 3.0e-26 122.9 215 42.3
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 3.0e-26 122.9 213 47.4
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 3.9e-26 122.5 213 42.7
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.1e-26 122.1 214 44.9
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 1.9e-25 120.2 154 54.5
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.9e-25 120.2 213 42.7
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 4.3e-25 119.0 212 42.5
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 5.7e-25 118.6 215 40.9
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 7.4e-25 118.2 215 40.5
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 9.7e-25 117.9 215 47.4
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 1.6e-24 117.1 210 44.8
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.2e-24 116.7 165 46.7
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 2.8e-24 116.3 218 39.9
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 2.8e-24 116.3 218 39.9
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 6.3e-24 115.2 218 39.9
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 6.3e-24 115.2 214 45.8
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 8.2e-24 114.8 171 45.0
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 8.2e-24 114.8 178 46.6
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 8.2e-24 114.8 215 41.4
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-23 114.0 214 42.5
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.4e-23 114.0 214 42.5
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 1.4e-23 114.0 121 57.0
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.4e-23 113.2 181 52.5
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 2.4e-23 113.2 183 43.2
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 2.4e-23 113.2 180 46.7
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 2.4e-23 113.2 214 42.5
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 5.3e-23 112.1 180 44.4
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 5.3e-23 112.1 218 39.0
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 5.3e-23 112.1 218 39.0
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 6.9e-23 111.7 219 39.7
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 9.0e-23 111.3 171 44.4
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.2e-22 110.9 143 49.0
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 3.4e-22 109.4 184 42.9
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 4.5e-22 109.0 179 41.9
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 5.9e-22 108.6 138 48.6
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 2.2e-21 106.7 179 41.3
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 2.9e-21 106.3 218 42.7
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 3.8e-21 105.9 211 44.5
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.9e-20 103.6 180 46.7
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.5e-20 103.2 213 45.5
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 3.2e-20 102.8 179 45.3
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 9.4e-20 101.3 182 42.9
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 9.4e-20 101.3 182 42.9
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.4e-18 97.4 167 43.1
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.8e-18 97.1 213 38.0
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 3.0e-18 96.3 204 38.2
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 3.0e-18 96.3 213 46.0
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 6.7e-18 95.1 217 51.2
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 8.8e-18 94.7 214 38.8
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.5e-17 94.0 210 36.7
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.5e-17 94.0 217 40.1
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 2.0e-17 93.6 164 40.9
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.3e-16 90.9 154 44.2
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 3.7e-16 89.4 217 39.2
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.7e-16 89.4 216 44.0
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.4e-15 87.4 224 40.2
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 3.1e-15 86.3 217 39.6
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.1e-15 85.9 207 38.2
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 5.3e-15 85.5 213 35.2
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.6e-14 83.2 155 38.7
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 5.9e-14 82.0 177 38.4
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 7.7e-14 81.6 130 50.0
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-13 81.3 122 44.3
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.3e-13 80.9 176 37.5
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.7e-13 80.5 120 44.2
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 2.2e-13 80.1 140 41.4
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 3.8e-13 79.3 135 40.7
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.8e-13 79.3 212 34.0
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 5.0e-13 79.0 214 32.2
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 6.5e-13 78.6 171 42.7
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 8.5e-13 78.2 124 44.4
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.9e-12 77.0 145 41.4
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 9.4e-12 74.7 111 51.4
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 3.6e-11 72.8 207 33.3
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 3.0e-10 69.7 117 42.7
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 3.9e-10 69.3 72 66.7
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 5.1e-10 68.9 120 42.5
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.1e-09 67.8 94 44.7
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 1.5e-09 67.4 127 42.5
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 7.4e-09 65.1 207 30.9
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 1.3e-08 64.3 143 35.7
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 4.8e-08 62.4 86 47.7
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 6.3e-08 62.0 43 67.4
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 6.3e-08 62.0 176 30.7
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 1.8e-07 60.5 211 29.9
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 2.4e-07 60.1 89 46.1
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 4.1e-07 59.3 109 39.4
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.2e-06 57.8 203 32.0


User provided reference genes

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