Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.8e-50 202.2 102 100.0
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 5.9e-24 114.8 122 59.0
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.8e-20 103.2 106 60.4
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.0e-19 99.8 107 57.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 5.7e-19 98.2 107 56.1
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 7.4e-19 97.8 111 53.2
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 9.7e-19 97.4 109 54.1
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 4.1e-17 92.0 105 54.3
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 5.3e-17 91.7 112 54.5
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 7.0e-17 91.3 93 58.1
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 2.6e-16 89.4 68 64.7
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 7.7e-16 87.8 99 53.5
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.0e-15 87.4 117 50.4
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.7e-15 86.7 95 54.7
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.7e-15 86.7 102 58.8
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 3.8e-15 85.5 94 56.4
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 5.0e-15 85.1 62 71.0
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 5.0e-15 85.1 110 53.6
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 6.5e-15 84.7 114 50.9
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.5e-15 84.7 83 59.0
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 6.5e-15 84.7 94 57.4
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 8.5e-15 84.3 111 53.2
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 8.5e-15 84.3 105 51.4
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 1.1e-14 84.0 102 53.9
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 2.5e-14 82.8 108 50.0
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 2.5e-14 82.8 108 50.0
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.5e-14 82.8 102 55.9
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 2.5e-14 82.8 97 55.7
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 3.2e-14 82.4 50 74.0
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 3.2e-14 82.4 102 54.9
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 4.2e-14 82.0 44 84.1
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 4.2e-14 82.0 44 84.1
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 4.2e-14 82.0 44 84.1
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 4.2e-14 82.0 75 65.3
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 4.2e-14 82.0 78 56.4
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 5.5e-14 81.6 43 86.0
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 9.4e-14 80.9 102 51.0
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.2e-13 80.5 102 52.9
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.2e-13 80.5 102 54.9
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.2e-13 80.5 44 81.8
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.2e-13 80.5 102 53.9
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.2e-13 80.5 44 81.8
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.2e-13 80.5 65 61.5
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 1.2e-13 80.5 38 94.7
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.6e-13 80.1 102 53.9
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 2.1e-13 79.7 53 69.8
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 2.1e-13 79.7 61 63.9
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 2.1e-13 79.7 48 75.0
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.7e-13 79.3 104 50.0
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.7e-13 79.3 39 87.2
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 2.7e-13 79.3 39 87.2
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.7e-13 79.3 92 54.3
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 2.7e-13 79.3 39 87.2
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 3.6e-13 79.0 111 49.5
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 3.6e-13 79.0 102 52.9
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 4.7e-13 78.6 99 48.5
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.7e-13 78.6 44 79.5
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 6.1e-13 78.2 38 89.5
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 6.1e-13 78.2 38 89.5
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 6.1e-13 78.2 71 56.3
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 8.0e-13 77.8 39 84.6
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.0e-12 77.4 76 53.9
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.0e-12 77.4 94 54.3
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.0e-12 77.4 86 53.5
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.0e-12 77.4 78 61.5
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.0e-12 77.4 42 83.3
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.0e-12 77.4 101 48.5
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.8e-12 76.6 106 50.9
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.8e-12 76.6 105 48.6
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 2.3e-12 76.3 108 48.1
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.3e-12 76.3 109 48.6
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 2.3e-12 76.3 94 56.4
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 2.3e-12 76.3 94 56.4
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 2.3e-12 76.3 94 56.4
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 2.3e-12 76.3 80 62.5
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 3.0e-12 75.9 102 47.1
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 4.0e-12 75.5 34 97.1
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 4.0e-12 75.5 86 52.3
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 4.0e-12 75.5 102 49.0
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 5.2e-12 75.1 58 62.1
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 5.2e-12 75.1 37 89.2
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 6.7e-12 74.7 83 50.6
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 6.7e-12 74.7 83 50.6
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.7e-12 74.7 80 53.8
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 6.7e-12 74.7 45 71.1
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 6.7e-12 74.7 68 54.4
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 8.8e-12 74.3 92 50.0
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 8.8e-12 74.3 106 42.5
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 8.8e-12 74.3 34 97.1
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 1.2e-11 73.9 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 1.2e-11 73.9 35 91.4
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.2e-11 73.9 92 51.1
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.2e-11 73.9 105 46.7
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 1.2e-11 73.9 116 45.7
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.5e-11 73.6 104 47.1
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.5e-11 73.6 94 54.3
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.5e-11 73.6 76 51.3
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.5e-11 73.6 44 75.0
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.5e-11 73.6 81 53.1
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 2.0e-11 73.2 104 50.0
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 2.0e-11 73.2 115 44.3
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 2.0e-11 73.2 34 94.1
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.6e-11 72.8 94 44.7
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 2.6e-11 72.8 39 82.1
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 2.6e-11 72.8 96 52.1
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 2.6e-11 72.8 44 72.7
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 3.3e-11 72.4 34 91.2
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 4.4e-11 72.0 37 83.8
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 9.7e-11 70.9 105 51.4
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 9.7e-11 70.9 43 74.4
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 9.7e-11 70.9 109 43.1
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 9.7e-11 70.9 102 46.1
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 9.7e-11 70.9 43 74.4
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.3e-10 70.5 99 46.5
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.7e-10 70.1 99 50.5
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 2.8e-10 69.3 74 52.7
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 2.8e-10 69.3 34 85.3
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 4.8e-10 68.6 34 85.3
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 4.8e-10 68.6 89 46.1
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 6.3e-10 68.2 77 50.6
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 6.3e-10 68.2 114 42.1
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.1e-09 67.4 34 79.4
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 4.1e-09 65.5 75 48.0
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 4.1e-09 65.5 110 45.5
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 4.1e-09 65.5 105 43.8
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 1.7e-07 60.1 105 42.9


User provided reference genes

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