Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 6.8e-56 220.3 104 100.0
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.2e-21 104.8 105 55.2
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 1.2e-20 103.2 104 53.8
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 3.5e-20 101.7 103 54.4
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 1.3e-17 93.2 97 51.5
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 2.2e-17 92.4 99 48.5
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 4.8e-17 91.3 106 45.3
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 6.3e-17 90.9 99 55.6
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 8.2e-17 90.5 99 53.5
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 1.8e-16 89.4 101 52.5
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.4e-16 89.0 99 53.5
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 1.2e-15 86.7 104 45.2
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.5e-15 86.3 107 47.7
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.5e-15 86.3 105 47.6
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 3.4e-15 85.1 104 52.9
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 3.4e-15 85.1 104 44.2
COL.COLO4_26960 Corchorus olitorius HOM05D003277 ORTHO05D003275 7.7e-15 84.0 97 50.5
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 7.7e-15 84.0 101 48.5
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 1.0e-14 83.6 99 52.5
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.0e-14 83.6 107 44.9
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 6.5e-14 80.9 103 43.7
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 6.5e-14 80.9 97 47.4
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 6.5e-14 80.9 97 48.5
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 8.5e-14 80.5 98 45.9
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 8.5e-14 80.5 98 49.0
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.9e-13 79.3 105 47.6
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 1.9e-13 79.3 106 45.3
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.5e-13 79.0 94 47.9
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 3.2e-13 78.6 101 47.5
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 3.2e-13 78.6 98 44.9
CANSAT56G3518 Cannabis sativa HOM05D003277 ORTHO05D003275 4.2e-13 78.2 119 42.9
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 5.5e-13 77.8 103 42.7
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 7.2e-13 77.4 103 47.6
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 9.4e-13 77.0 108 41.7
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 9.4e-13 77.0 102 43.1
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.2e-12 76.6 93 46.2
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 1.6e-12 76.3 64 56.2
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 2.1e-12 75.9 99 43.4
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 4.6e-12 74.7 100 47.0
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 6.1e-12 74.3 63 60.3
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 1.0e-11 73.6 106 42.5
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 1.0e-11 73.6 106 41.5
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.0e-11 73.6 105 40.0
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 1.4e-11 73.2 99 44.4
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.3e-11 72.4 102 44.1
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 2.3e-11 72.4 73 52.1
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 3.0e-11 72.0 105 44.8
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 3.0e-11 72.0 102 44.1
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.0e-11 72.0 102 44.1
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 3.0e-11 72.0 77 48.1
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 3.0e-11 72.0 98 46.9
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.1e-11 71.2 61 60.7
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 5.1e-11 71.2 97 40.2
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 6.7e-11 70.9 102 43.1
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 8.8e-11 70.5 75 54.7
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 8.8e-11 70.5 100 43.0
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 8.8e-11 70.5 100 43.0
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.5e-10 69.7 102 43.1
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.5e-10 69.7 74 50.0
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 1.5e-10 69.7 66 57.6
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.0e-10 69.3 101 41.6
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 2.0e-10 69.3 113 38.1
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 2.5e-10 68.9 100 43.0
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 2.5e-10 68.9 64 60.9
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 2.5e-10 68.9 61 59.0
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 2.5e-10 68.9 103 39.8
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 3.3e-10 68.6 106 39.6
Migut.A00248 Erythranthe guttata HOM05D003277 ORTHO05D003275 3.3e-10 68.6 100 38.0
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 3.3e-10 68.6 69 49.3
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.3e-10 68.6 69 49.3
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.3e-10 68.6 69 49.3
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 3.3e-10 68.6 64 53.1
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 4.3e-10 68.2 60 53.3
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 4.3e-10 68.2 60 58.3
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 5.7e-10 67.8 97 40.2
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.4e-10 67.4 97 46.4
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 7.4e-10 67.4 69 49.3
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.4e-10 67.4 100 40.0
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 7.4e-10 67.4 100 40.0
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 9.7e-10 67.0 113 40.7
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 9.7e-10 67.0 94 40.4
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.3e-09 66.6 60 51.7
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.3e-09 66.6 74 48.6
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.3e-09 66.6 100 40.0
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 1.3e-09 66.6 100 43.0
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 1.3e-09 66.6 100 43.0
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 1.7e-09 66.2 64 50.0
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.7e-09 66.2 99 44.4
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.7e-09 66.2 99 44.4
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.7e-09 66.2 99 44.4
Peaxi162Scf00546g00117 Petunia axillaris HOM05D003277 ORTHO05D003275 1.7e-09 66.2 109 42.2
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 2.2e-09 65.9 64 50.0
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 2.2e-09 65.9 103 41.7
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 2.2e-09 65.9 77 46.8
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 2.8e-09 65.5 104 43.3
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 2.8e-09 65.5 105 38.1
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 3.7e-09 65.1 61 52.5
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 6.3e-09 64.3 75 50.7
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 6.3e-09 64.3 75 50.7
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 6.3e-09 64.3 60 53.3
QL12p026142 Quercus lobata HOM05D003277 ORTHO05D003275 6.3e-09 64.3 98 41.8
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 8.2e-09 63.9 75 48.0
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 8.2e-09 63.9 59 52.5
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 8.2e-09 63.9 59 52.5
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 8.2e-09 63.9 102 40.2
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.1e-08 63.5 97 42.3
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 1.1e-08 63.5 63 58.7
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 1.1e-08 63.5 100 38.0
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.1e-08 63.5 63 54.0
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 1.1e-08 63.5 60 55.0
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 1.4e-08 63.2 85 42.4
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 1.4e-08 63.2 71 47.9
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 1.8e-08 62.8 92 41.3
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 1.8e-08 62.8 68 48.5
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 2.4e-08 62.4 98 42.9
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 2.4e-08 62.4 73 46.6
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 3.1e-08 62.0 65 52.3
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 3.1e-08 62.0 102 38.2
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.1e-08 61.6 103 40.8
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 4.1e-08 61.6 63 54.0
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 5.3e-08 61.2 99 40.4
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 5.3e-08 61.2 84 40.5
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 6.9e-08 60.8 63 54.0
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 6.9e-08 60.8 104 37.5
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 6.9e-08 60.8 63 50.8
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 9.1e-08 60.5 92 41.3
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 9.1e-08 60.5 63 50.8
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 1.2e-07 60.1 92 40.2
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.5e-07 59.7 60 58.3
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.5e-07 59.7 65 47.7
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.0e-07 59.3 65 49.2
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 2.0e-07 59.3 71 46.5
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 2.6e-07 58.9 102 38.2
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 2.6e-07 58.9 71 43.7
Actinidia08979 Actinidia chinensis HOM05D005698 ORTHO05D007022 3.4e-07 58.5 62 46.8
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 3.4e-07 58.5 76 40.8
DCAR_010449 Daucus carota HOM05D003277 ORTHO05D003275 3.4e-07 58.5 101 38.6
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 3.4e-07 58.5 69 44.9
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.4e-07 58.5 60 51.7
Lsat_1_v5_gn_8_93781 Lactuca sativa HOM05D000750 ORTHO05D000714 4.5e-07 58.2 103 35.0
Peaxi162Scf00560g00019 Petunia axillaris HOM05D003277 ORTHO05D003275 4.5e-07 58.2 91 37.4
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 4.5e-07 58.2 60 56.7
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 5.9e-07 57.8 74 43.2
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.7e-07 57.4 59 55.9
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 7.7e-07 57.4 59 45.8
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 7.7e-07 57.4 86 41.9
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 7.7e-07 57.4 62 53.2
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 7.7e-07 57.4 77 41.6
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 1.0e-06 57.0 98 36.7
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.0e-06 57.0 60 48.3
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.3e-06 56.6 111 37.8
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 1.3e-06 56.6 105 39.0
CARHR115510 Cardamine hirsuta HOM05D012534 ORTHO05D003275 1.3e-06 56.6 78 38.5
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 1.3e-06 56.6 63 50.8
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 1.7e-06 56.2 63 50.8
Sopen12g003030 Solanum pennellii HOM05D003277 ORTHO05D003275 1.7e-06 56.2 112 36.6
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 2.2e-06 55.8 63 49.2
Rhsim12G0198400 Rhododendron simsii HOM05D000062 ORTHO05D014675 2.2e-06 55.8 103 34.0
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 2.2e-06 55.8 69 43.5
CiPaw.03G233200 Carya illinoinensis HOM05D003277 ORTHO05D003275 2.9e-06 55.5 97 36.1
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.9e-06 55.5 109 33.9
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 2.9e-06 55.5 63 47.6
PGSC0003DMG400000319 Solanum tuberosum HOM05D003277 ORTHO05D003275 2.9e-06 55.5 111 36.9
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 2.9e-06 55.5 31 83.9
AT2G25735 Arabidopsis thaliana HOM05D012534 ORTHO05D003275 3.8e-06 55.1 81 39.5
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 3.8e-06 55.1 102 35.3
RcHm_v2.0_Chr2g0090671 Rosa chinensis HOM05D003277 ORTHO05D003275 5.0e-06 54.7 56 51.8
arahy.Tifrunner.gnm1.ann1.YJAD7Q Arachis hypogaea HOM05D003277 ORTHO05D003275 6.5e-06 54.3 60 53.3
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 6.5e-06 54.3 71 46.5
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 6.5e-06 54.3 109 33.0
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 6.5e-06 54.3 60 46.7
TPR.G39760 Trifolium pratense HOM05D003277 ORTHO05D003275 6.5e-06 54.3 63 47.6
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 8.5e-06 53.9 60 48.3
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 8.5e-06 53.9 63 47.6
Sc21g0005130 Simmondsia chinensis HOM05D003277 ORTHO05D003275 8.5e-06 53.9 31 74.2
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 8.5e-06 53.9 63 47.6


User provided reference genes

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