Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 4.4e-237 824.3 438 100.0
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 4.5e-133 478.8 418 62.9
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 9.4e-131 471.1 407 63.1
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 3.0e-129 466.1 415 60.0
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.1e-128 464.2 408 61.0
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 2.2e-127 459.9 396 61.6
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 3.7e-127 459.1 395 63.5
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 6.3e-127 458.4 413 59.6
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 3.5e-125 452.6 415 60.0
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 5.9e-125 451.8 383 64.0
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.1e-123 447.6 415 58.3
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 7.2e-123 444.9 413 58.1
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 9.4e-123 444.5 418 59.1
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.6e-122 443.7 423 57.7
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 8.0e-122 441.4 423 57.2
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 9.7e-120 434.5 382 63.6
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 2.2e-119 433.3 385 61.3
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 3.1e-118 429.5 424 56.8
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 4.1e-118 429.1 410 57.3
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 2.0e-117 426.8 468 53.4
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 5.9e-117 425.2 410 56.8
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 7.2e-115 418.3 475 51.8
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 9.4e-115 417.9 456 52.6
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 8.3e-111 404.8 419 54.7
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 8.3e-111 404.8 406 56.7
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 1.8e-110 403.7 467 51.8
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 7.0e-110 401.7 415 54.0
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 7.0e-110 401.7 489 49.1
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 6.5e-108 395.2 536 45.5
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.1e-107 394.4 415 53.7
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.5e-107 394.0 416 53.4
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 2.1e-106 390.2 401 52.6
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 8.0e-106 388.3 442 54.3
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 2.3e-105 386.7 389 57.8
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 2.0e-104 383.6 437 51.9
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 2.0e-104 383.6 416 53.4
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.0e-104 383.6 414 51.9
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 2.6e-104 383.3 413 53.3
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 4.4e-104 382.5 479 49.3
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 5.7e-104 382.1 412 51.7
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 9.8e-104 381.3 413 53.3
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 1.7e-103 380.6 420 53.8
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 6.3e-103 378.6 416 54.3
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.1e-102 377.9 395 53.9
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 7.0e-102 375.2 389 53.7
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 9.1e-102 374.8 433 51.3
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 1.0e-100 371.3 418 51.4
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 1.0e-100 371.3 375 53.3
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 2.9e-100 369.8 422 51.9
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 6.6e-100 368.6 416 51.0
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 1.1e-99 367.9 420 51.4
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 2.5e-99 366.7 418 51.0
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 9.5e-99 364.8 410 52.0
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 1.0e-97 361.3 432 48.8
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 2.3e-97 360.1 396 54.0
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 8.9e-97 358.2 446 49.6
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 1.5e-96 357.5 448 47.5
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 3.4e-96 356.3 394 52.3
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 9.8e-96 354.8 426 49.5
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.3e-95 354.4 413 49.9
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.8e-94 350.5 416 50.0
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 9.2e-94 348.2 422 48.8
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 2.0e-93 347.1 420 48.8
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 1.0e-92 344.7 414 50.0
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 5.0e-92 342.4 431 47.3
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 6.6e-92 342.0 453 46.8
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 1.6e-90 337.4 422 47.4
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 4.7e-90 335.9 408 48.3
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 1.0e-89 334.7 427 46.8
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 4.4e-88 329.3 421 47.5
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 4.4e-88 329.3 415 47.2
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.4e-86 324.3 408 48.0
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 1.4e-86 324.3 355 54.4
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 9.2e-86 321.6 421 45.8
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 4.6e-85 319.3 422 46.9
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 4.6e-85 319.3 422 46.9
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 4.6e-85 319.3 401 45.4
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 2.3e-84 317.0 422 46.7
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 3.9e-84 316.2 464 43.5
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 1.1e-83 314.7 424 46.5
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 1.1e-83 314.7 424 46.5
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 4.3e-83 312.8 429 44.3
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 3.6e-82 309.7 408 47.1
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.7e-79 300.8 327 52.0
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 3.2e-78 296.6 421 44.9
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 4.1e-78 296.2 342 50.0
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 5.4e-78 295.8 414 44.2
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.3e-76 290.4 382 47.9
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 1.1e-75 288.1 419 43.9
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 2.1e-74 283.9 423 43.7
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 3.6e-74 283.1 407 43.5
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 6.0e-69 265.8 401 41.9
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 4.7e-66 256.1 216 62.0
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 2.9e-63 246.9 190 66.8
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 1.9e-51 207.6 260 47.7
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.9e-51 207.6 195 53.3
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 3.1e-49 200.3 491 32.2
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 2.5e-35 154.1 143 53.1
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 4.8e-34 149.8 114 61.4
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.3e-31 141.7 176 51.1
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 2.2e-31 141.0 120 60.8
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 4.2e-30 136.7 247 40.5
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 5.5e-30 136.3 139 54.0
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 1.2e-29 135.2 507 28.2
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 4.6e-29 133.3 124 57.3
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.0e-28 132.1 417 31.7
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.0e-28 132.1 417 31.7
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 1.7e-23 114.8 92 58.7
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 2.9e-23 114.0 85 60.0
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 1.5e-19 101.7 73 63.0
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 2.4e-17 94.4 111 47.7
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.6e-16 90.9 551 23.6
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 3.2e-14 84.0 367 26.2
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 5.5e-14 83.2 79 53.2
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 1.4e-12 78.6 69 56.5
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 7.4e-11 72.8 178 34.3
MD02G1040500 Malus domestica HOM05D006752 ORTHO05D008597 1.3e-10 72.0 97 49.5
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 3.1e-09 67.4 64 57.8
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 7.7e-08 62.8 134 35.1
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 7.7e-08 62.8 102 42.2
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 3.2e-06 57.4 134 35.1
MD02G1040400 Malus domestica HOM05D006752 ORTHO05D008597 3.2e-06 57.4 65 47.7
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.2e-06 57.0 180 31.1
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 5.5e-06 56.6 180 31.1


User provided reference genes

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