Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 5.2e-159 564.3 282 100.0
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.3e-130 469.9 273 86.1
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.2e-126 456.8 273 81.7
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 3.4e-126 455.3 274 82.5
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 2.9e-125 452.2 274 81.8
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 3.2e-124 448.7 265 84.2
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 3.0e-122 442.2 271 81.2
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.6e-120 436.4 257 84.0
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 2.8e-120 435.6 278 75.9
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 8.2e-120 434.1 278 75.9
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.8e-119 433.0 278 75.5
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-119 433.0 278 75.2
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 2.4e-119 432.6 278 75.5
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 6.9e-119 431.0 258 81.8
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 6.9e-119 431.0 267 80.5
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 2.0e-118 429.5 266 81.6
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.0e-118 429.5 278 74.8
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.6e-118 429.1 257 82.1
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 3.4e-118 428.7 256 80.5
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.9e-117 425.6 261 81.2
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 3.8e-117 425.2 258 80.6
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 5.5e-116 421.4 258 80.6
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.2e-115 420.2 264 79.5
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 1.6e-115 419.9 263 77.9
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 3.6e-115 418.7 263 77.6
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 3.6e-115 418.7 270 79.6
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 4.6e-115 418.3 256 80.5
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 4.6e-115 418.3 254 80.3
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 4.6e-115 418.3 277 75.8
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 4.6e-115 418.3 263 77.9
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 6.1e-115 417.9 271 77.1
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.1e-115 417.9 265 78.1
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 7.9e-115 417.5 239 85.4
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.0e-114 417.2 263 77.9
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 3.0e-114 415.6 255 79.2
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 5.1e-114 414.8 245 81.6
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 8.8e-114 414.1 251 80.5
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.1e-113 413.7 247 79.8
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.1e-113 413.7 247 79.8
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.5e-113 413.3 247 79.8
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 2.0e-113 412.9 242 82.2
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 2.0e-113 412.9 251 80.5
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 5.7e-113 411.4 271 77.5
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 7.4e-113 411.0 254 79.5
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 7.4e-113 411.0 254 79.5
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 7.4e-113 411.0 254 79.5
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 9.7e-113 410.6 254 79.5
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 9.7e-113 410.6 254 79.5
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 3.7e-112 408.7 254 77.2
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 6.3e-112 407.9 254 78.7
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 1.8e-111 406.4 256 76.6
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.4e-111 406.0 247 78.5
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 5.3e-111 404.8 247 78.1
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.0e-110 402.9 252 77.0
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 3.4e-110 402.1 304 68.8
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 5.9e-110 401.4 245 77.6
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.0e-109 400.6 247 77.7
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 3.2e-108 395.6 245 76.3
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 4.2e-108 395.2 247 77.7
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 7.2e-108 394.4 262 74.4
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.6e-107 393.3 258 76.4
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 2.1e-107 392.9 267 73.8
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 2.7e-107 392.5 251 76.1
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 3.6e-107 392.1 264 72.7
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.0e-106 390.6 249 75.9
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 3.9e-106 388.7 272 73.2
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 6.7e-106 387.9 246 77.2
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 6.7e-106 387.9 246 77.2
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 2.6e-105 386.0 263 72.6
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 2.6e-105 386.0 267 72.7
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 4.4e-105 385.2 267 73.0
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.3e-104 383.6 263 72.6
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 1.3e-104 383.6 250 75.2
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.8e-104 382.5 249 74.7
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 4.8e-104 381.7 284 70.8
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 8.2e-104 380.9 245 73.9
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.1e-103 380.6 250 75.2
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.1e-103 380.6 257 73.2
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 5.3e-103 378.3 250 74.8
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 2.9e-101 372.5 258 72.1
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 2.9e-101 372.5 269 71.0
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 7.2e-100 367.9 263 68.8
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 4.7e-99 365.2 249 72.3
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 8.8e-98 360.9 252 71.0
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 3.3e-97 359.0 239 71.1
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 9.1e-95 350.9 190 88.4
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.5e-92 343.6 207 80.2
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.2e-91 340.5 246 68.3
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 4.4e-89 332.0 261 64.8
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 2.2e-88 329.7 278 61.2
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 2.5e-84 316.2 254 63.4
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.2e-84 315.8 304 58.2
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.5e-84 315.1 290 59.7
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 2.3e-82 309.7 269 59.5
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.3e-82 309.7 167 87.4
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 5.2e-82 308.5 272 60.3
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 6.8e-82 308.1 270 60.0
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 4.4e-81 305.4 167 86.2
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 5.7e-81 305.1 251 64.5
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 4.9e-80 302.0 239 64.4
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 7.7e-78 294.7 247 60.7
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.7e-77 293.5 250 61.6
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 3.8e-77 292.4 272 58.1
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.6e-75 287.0 258 59.7
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.4e-74 283.9 255 56.9
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 7.5e-73 278.1 256 60.5
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.1e-71 274.2 251 58.6
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.5e-68 263.8 166 75.9
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.0e-65 253.4 341 48.1
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.1e-63 245.7 156 74.4
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.8e-58 230.3 171 68.4
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.5e-57 227.3 286 46.5
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.9e-56 223.0 239 51.0
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 7.8e-54 214.9 270 44.8
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 6.2e-51 205.3 212 50.5
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 3.3e-44 183.0 246 41.1
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.6e-43 180.6 128 70.3
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.2e-40 170.2 110 73.6
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 6.4e-40 168.7 162 53.7
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 6.2e-35 152.1 85 83.5
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 1.2e-30 137.9 76 85.5
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-30 137.9 101 62.4
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 2.5e-28 130.2 131 54.2
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.6e-22 110.9 88 62.5
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 3.1e-18 96.7 86 53.5
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 5.3e-18 95.9 186 33.3
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.6e-14 84.3 64 67.2
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 6.0e-14 82.4 39 92.3
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 2.5e-12 77.0 74 48.6
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 1.4e-10 71.2 66 53.0
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 1.4e-10 71.2 37 86.5
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 1.4e-10 71.2 37 86.5
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 2.0e-09 67.4 58 50.0
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 6.5e-08 62.4 58 51.7
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.9e-07 60.8 83 38.6
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-06 57.4 42 64.3


User provided reference genes

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