Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 4.8e-129 464.5 239 100.0
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 4.2e-85 318.5 208 81.7
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 4.1e-80 302.0 245 70.2
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 2.6e-74 282.7 245 63.7
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 1.3e-73 280.4 251 63.7
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 1.7e-73 280.0 241 66.0
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 1.2e-71 273.9 244 62.3
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 5.0e-70 268.5 246 64.6
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 1.1e-69 267.3 236 65.7
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 1.9e-69 266.5 238 63.4
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 3.3e-69 265.8 246 64.2
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 4.3e-69 265.4 232 65.1
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 5.6e-69 265.0 245 63.7
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 9.5e-69 264.2 236 65.3
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 9.5e-69 264.2 236 65.3
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 4.7e-68 261.9 228 66.7
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.7e-68 261.9 236 64.8
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 3.1e-67 259.2 235 63.8
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 6.8e-67 258.1 236 64.4
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 6.8e-67 258.1 236 64.4
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 2.6e-66 256.1 233 63.9
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 7.5e-66 254.6 262 58.4
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 1.3e-65 253.8 240 61.7
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 3.7e-65 252.3 245 60.4
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 8.3e-65 251.1 238 59.7
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 2.4e-64 249.6 245 61.2
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 2.4e-64 249.6 240 61.2
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 3.2e-64 249.2 240 61.2
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 4.1e-64 248.8 247 61.9
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 3.5e-63 245.7 245 60.4
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 4.6e-63 245.4 244 60.7
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 1.9e-61 240.0 229 58.1
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 4.3e-61 238.8 259 56.0
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 9.5e-61 237.7 233 57.9
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 2.8e-60 236.1 222 63.1
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 2.8e-60 236.1 222 58.6
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 8.1e-60 234.6 200 66.5
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 1.1e-59 234.2 242 55.4
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 1.4e-59 233.8 219 62.6
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 1.8e-59 233.4 244 57.0
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 2.3e-59 233.0 238 57.1
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 8.9e-59 231.1 228 58.3
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 1.2e-58 230.7 238 55.5
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 2.0e-58 229.9 239 51.5
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 7.5e-58 228.0 246 56.1
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 2.9e-57 226.1 280 53.6
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 3.7e-57 225.7 239 56.9
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 6.4e-57 224.9 220 58.2
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 6.4e-57 224.9 210 58.1
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 8.3e-57 224.6 246 52.8
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 2.4e-56 223.0 241 55.6
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 5.4e-56 221.9 210 59.5
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 2.7e-55 219.5 276 50.7
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 3.5e-55 219.2 224 58.9
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 1.3e-54 217.2 209 59.3
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 8.6e-54 214.5 219 57.1
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 1.1e-53 214.2 220 56.8
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 7.3e-53 211.5 251 51.4
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 9.5e-53 211.1 235 53.2
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 1.6e-52 210.3 235 53.6
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 6.2e-52 208.4 209 58.9
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 1.1e-51 207.6 245 51.8
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 1.1e-51 207.6 199 57.8
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 1.8e-51 206.8 291 47.8
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 1.8e-51 206.8 219 55.7
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 1.8e-51 206.8 247 49.8
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 3.1e-51 206.1 216 56.5
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 3.1e-51 206.1 209 58.4
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 3.1e-51 206.1 209 58.4
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 4.0e-51 205.7 221 55.2
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 6.8e-51 204.9 210 57.6
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 8.9e-51 204.5 211 55.9
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 1.5e-50 203.8 242 52.1
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 2.0e-50 203.4 250 51.6
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 2.6e-50 203.0 199 58.8
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 3.4e-50 202.6 229 53.7
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 5.8e-50 201.8 213 55.4
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 2.2e-49 199.9 211 57.3
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 2.9e-49 199.5 233 54.1
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 3.8e-49 199.1 202 57.9
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 4.9e-49 198.7 172 64.0
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 1.1e-48 197.6 235 52.3
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 2.1e-47 193.4 194 55.7
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 1.7e-46 190.3 282 42.6
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 1.1e-45 187.6 184 53.3
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 1.1e-45 187.6 284 45.4
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 3.3e-45 186.0 140 64.3
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 9.6e-45 184.5 170 62.4
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 3.4e-42 176.0 216 50.9
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 3.4e-42 176.0 244 47.5
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 4.4e-42 175.6 244 47.5
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 7.6e-42 174.9 129 65.9
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 1.7e-41 173.7 218 52.3
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 5.4e-40 168.7 249 47.8
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 3.0e-38 162.9 152 57.9
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 4.3e-37 159.1 246 43.1
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 5.6e-37 158.7 234 44.0
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 5.8e-34 148.7 173 50.9
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 1.7e-33 147.1 266 41.0
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 3.8e-33 146.0 220 43.6
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 2.3e-30 136.7 165 48.5
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 8.1e-28 128.3 194 46.9
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 6.9e-27 125.2 204 40.7
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 1.1e-24 117.9 220 38.6
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 1.9e-24 117.1 105 59.0
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 3.2e-24 116.3 219 38.8
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 5.5e-24 115.5 125 48.0
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 6.0e-23 112.1 96 65.6
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 5.1e-22 109.0 148 50.0
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 2.5e-16 90.1 126 42.1
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 3.2e-16 89.7 66 63.6
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 3.9e-14 82.8 112 50.0
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 1.9e-13 80.5 112 49.1
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 2.5e-13 80.1 117 49.6
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 1.3e-12 77.8 50 74.0
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.5e-10 70.9 50 62.0
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 4.5e-10 69.3 49 81.6
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 2.9e-09 66.6 148 35.8
PGSC0003DMG402008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 1.9e-08 63.9 44 59.1
PGSC0003DMG401008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 2.5e-08 63.5 97 44.3
Sabra19G0056100 Salix brachista HOM05D006369 ORTHO05D007764 2.7e-07 60.1 70 45.7


User provided reference genes

Program Settings