Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1018 Acer truncatum HOM05D003231 ORTHO05D003865 7.6e-56 220.3 116 100.0
Atru.chr7.2716 Acer truncatum HOM05D003231 ORTHO05D003865 1.5e-43 179.5 110 87.3
Thecc.09G002000 Theobroma cacao HOM05D003231 ORTHO05D003865 5.5e-30 134.4 112 69.6
Duzib150G0378 Durio zibethinus HOM05D003231 ORTHO05D003865 1.6e-29 132.9 111 69.4
COL.COLO4_18634 Corchorus olitorius HOM05D003231 ORTHO05D003865 3.6e-29 131.7 111 68.5
Ciclev10011920m.g Citrus clementina HOM05D003231 ORTHO05D003865 4.7e-29 131.3 112 70.5
CiPaw.07G214900 Carya illinoinensis HOM05D003231 ORTHO05D003865 8.0e-29 130.6 111 66.7
Duzib168G0939 Durio zibethinus HOM05D003231 ORTHO05D003865 1.0e-28 130.2 111 68.5
Cfa013246 Carpinus fangiana HOM05D003231 ORTHO05D003865 5.2e-28 127.9 111 64.9
Gohir.A06G108000 Gossypium hirsutum HOM05D003231 ORTHO05D003865 1.5e-27 126.3 112 66.1
Gohir.D06G110100 Gossypium hirsutum HOM05D003231 ORTHO05D003865 2.6e-27 125.6 112 65.2
TWI63G1568 Tripterygium wilfordii HOM05D003231 ORTHO05D003865 3.3e-27 125.2 112 66.1
Haze_21690 Corylus avellana HOM05D003231 ORTHO05D003865 7.4e-27 124.0 111 64.9
Gorai.010G125100 Gossypium raimondii HOM05D003231 ORTHO05D003865 7.4e-27 124.0 112 64.3
Potri.006G281200 Populus trichocarpa HOM05D003231 ORTHO05D003865 1.3e-26 123.2 111 65.8
Sabra06G0217300 Salix brachista HOM05D003231 ORTHO05D003865 2.8e-26 122.1 109 64.2
CSS0026000 Camellia sinensis var. sinensis HOM05D003231 ORTHO05D003865 2.4e-25 119.0 111 64.9
TWI32G0035 Tripterygium wilfordii HOM05D003231 ORTHO05D003865 7.0e-25 117.5 114 64.9
CiPaw.08G017500 Carya illinoinensis HOM05D003231 ORTHO05D003865 9.1e-25 117.1 111 61.3
Rhsim08G0224200 Rhododendron simsii HOM05D003231 ORTHO05D003865 1.2e-24 116.7 112 58.0
Potri.006G281400 Populus trichocarpa HOM05D003231 ORTHO05D003865 2.0e-24 115.9 101 66.3
Sabra06G0217500 Salix brachista HOM05D003231 ORTHO05D003865 3.5e-24 115.2 101 66.3
QL12p024649 Quercus lobata HOM05D003231 ORTHO05D003865 7.7e-24 114.0 112 61.6
Ciclev10011811m.g Citrus clementina HOM05D003231 ORTHO05D003865 1.0e-23 113.6 109 62.4
Dinv09239 Davidia involucrata HOM05D003231 ORTHO05D003865 1.0e-23 113.6 108 60.2
Dinv09240 Davidia involucrata HOM05D003231 ORTHO05D003865 1.0e-23 113.6 110 59.1
Cpa.g.sc148.16 Carica papaya HOM05D003231 ORTHO05D003865 2.2e-23 112.5 112 63.4
vmacro07258 Vaccinium macrocarpon HOM05D003231 ORTHO05D003865 2.2e-23 112.5 109 58.7
GSVIVG01003918001 Vitis vinifera HOM05D003231 ORTHO05D003865 2.2e-23 112.5 102 63.7
GSVIVG01006883001 Vitis vinifera HOM05D003231 ORTHO05D003865 2.2e-23 112.5 102 63.7
Rhsim04G0219000 Rhododendron simsii HOM05D003231 ORTHO05D003865 3.8e-23 111.7 110 58.2
Dinv06253 Davidia involucrata HOM05D003231 ORTHO05D003865 5.0e-23 111.3 108 61.1
Dinv37392 Davidia involucrata HOM05D003231 ORTHO05D003865 5.0e-23 111.3 110 60.9
Gohir.A13G181800 Gossypium hirsutum HOM05D003231 ORTHO05D003865 6.5e-23 110.9 112 61.6
MD15G1110400 Malus domestica HOM05D003231 ORTHO05D003865 1.5e-22 109.8 111 58.6
TAR362G1099 Trochodendron aralioides HOM05D003231 ORTHO05D003865 1.5e-22 109.8 110 59.1
Actinidia23641 Actinidia chinensis HOM05D003231 ORTHO05D003865 3.2e-22 108.6 118 63.6
Cc01_g06730 Coffea canephora HOM05D003231 ORTHO05D003865 4.2e-22 108.2 111 59.5
Gorai.013G211500 Gossypium raimondii HOM05D003231 ORTHO05D003865 7.2e-22 107.5 112 59.8
Prupe.1G462700 Prunus persica HOM05D003231 ORTHO05D003865 7.2e-22 107.5 111 55.0
CANSAT25G1032 Cannabis sativa HOM05D003231 ORTHO05D003865 1.6e-21 106.3 111 55.9
Manes.16G138400 Manihot esculenta HOM05D003231 ORTHO05D003865 1.6e-21 106.3 109 58.7
Gohir.D13G185500 Gossypium hirsutum HOM05D003231 ORTHO05D003865 2.1e-21 105.9 112 58.9
vmacro00794 Vaccinium macrocarpon HOM05D003231 ORTHO05D003865 2.7e-21 105.5 110 55.5
GSVIVG01022781001 Vitis vinifera HOM05D003231 ORTHO05D003865 2.7e-21 105.5 103 62.1
Manes.07G090400 Manihot esculenta HOM05D003231 ORTHO05D003865 4.7e-21 104.8 109 58.7
PGR044G0019 Punica granatum HOM05D003231 ORTHO05D003865 1.4e-20 103.2 111 56.8
Eucgr.D01078 Eucalyptus grandis HOM05D003231 ORTHO05D003865 1.8e-20 102.8 109 56.9
TAR362G1253 Trochodendron aralioides HOM05D003231 ORTHO05D003865 3.0e-20 102.1 105 59.0
MSTRG.10658 Avicennia marina HOM05D003231 ORTHO05D003865 4.0e-20 101.7 111 55.0
Lj2A622T60 Lonicera japonica HOM05D003231 ORTHO05D003865 4.0e-20 101.7 103 59.2
CAN.G744.15 Capsicum annuum HOM05D003231 ORTHO05D003865 6.8e-20 100.9 111 56.8
Nitab4.5_0002974g0070 Nicotiana tabacum HOM05D003231 ORTHO05D003865 6.8e-20 100.9 111 56.8
Sopen04g026770 Solanum pennellii HOM05D003231 ORTHO05D003865 6.8e-20 100.9 111 57.7
ClCG05G017420 Citrullus lanatus HOM05D003231 ORTHO05D003865 8.8e-20 100.5 103 59.2
MD08G1133800 Malus domestica HOM05D003231 ORTHO05D003865 8.8e-20 100.5 111 55.9
Manes.01G174800 Manihot esculenta HOM05D003231 ORTHO05D003865 1.2e-19 100.1 109 56.9
arahy.Tifrunner.gnm1.ann1.BPJ3T6 Arachis hypogaea HOM05D003231 ORTHO05D003865 2.0e-19 99.4 113 55.8
Peaxi162Scf00263g00042 Petunia axillaris HOM05D003231 ORTHO05D003865 2.0e-19 99.4 114 56.1
Lalb_Chr11g0064081 Lupinus albus HOM05D003231 ORTHO05D003865 2.6e-19 99.0 113 55.8
Lalb_Chr23g0268911 Lupinus albus HOM05D003231 ORTHO05D003865 3.4e-19 98.6 113 54.9
Peaxi162Scf00033g00092 Petunia axillaris HOM05D003231 ORTHO05D003865 3.4e-19 98.6 108 56.5
CsaV3_3G046920 Cucumis sativus L. HOM05D003231 ORTHO05D003865 4.4e-19 98.2 103 57.3
Solyc04g064810.4 Solanum lycopersicum HOM05D003231 ORTHO05D003865 4.4e-19 98.2 111 56.8
MELO3C003645.2 Cucumis melo HOM05D003231 ORTHO05D003865 5.7e-19 97.8 103 57.3
Ca_15680_v3 Cicer arietinum L. HOM05D003231 ORTHO05D003865 9.7e-19 97.1 113 54.9
RcHm_v2.0_Chr6g0312251 Rosa chinensis HOM05D003231 ORTHO05D003865 9.7e-19 97.1 101 57.4
PGSC0003DMG400024848 Solanum tuberosum HOM05D003231 ORTHO05D003865 9.7e-19 97.1 111 55.9
arahy.Tifrunner.gnm1.ann1.GT9AC6 Arachis hypogaea HOM05D003231 ORTHO05D003865 2.2e-18 95.9 110 53.6
Nitab4.5_0011301g0030 Nicotiana tabacum HOM05D003231 ORTHO05D003865 2.2e-18 95.9 111 55.0
Phvul.009G100100 Phaseolus vulgaris HOM05D003231 ORTHO05D003865 2.2e-18 95.9 114 53.5
Medtr3g108690 Medicago truncatula HOM05D003231 ORTHO05D003865 3.7e-18 95.1 111 57.7
Nitab4.5_0000299g0150 Nicotiana tabacum HOM05D003231 ORTHO05D003865 3.7e-18 95.1 111 55.9
TPR.G12507 Trifolium pratense HOM05D003231 ORTHO05D003865 3.7e-18 95.1 112 53.6
CARHR117760 Cardamine hirsuta HOM05D003231 ORTHO05D003865 4.8e-18 94.7 103 54.4
Lalb_Chr24g0402411 Lupinus albus HOM05D003231 ORTHO05D003865 6.3e-18 94.4 108 53.7
arahy.Tifrunner.gnm1.ann1.1UP6DU Arachis hypogaea HOM05D003231 ORTHO05D003865 8.3e-18 94.0 113 54.0
DCAR_021019 Daucus carota HOM05D003231 ORTHO05D003865 8.3e-18 94.0 101 55.4
Glyma.14G132600 Glycine max HOM05D003231 ORTHO05D003865 8.3e-18 94.0 111 55.9
Lj2A622G59 Lonicera japonica HOM05D003231 ORTHO05D003865 8.3e-18 94.0 103 57.3
Lalb_Chr08g0243641 Lupinus albus HOM05D003231 ORTHO05D003865 8.3e-18 94.0 113 54.0
Nn7g36616 Nelumbo nucifera HOM05D003231 ORTHO05D003865 8.3e-18 94.0 103 54.4
Nn7g37407 Nelumbo nucifera HOM05D003231 ORTHO05D003865 8.3e-18 94.0 107 53.3
Aqoxy7G04165 Aquilegia oxysepala HOM05D003231 ORTHO05D003865 1.1e-17 93.6 102 52.9
CAN.G963.1 Capsicum annuum HOM05D003231 ORTHO05D003865 1.1e-17 93.6 111 54.1
FAN15G1275 Fragaria x ananassa HOM05D003231 ORTHO05D003865 1.1e-17 93.6 101 54.5
Glyma.11G175328 Glycine max HOM05D003231 ORTHO05D003865 1.1e-17 93.6 111 55.9
Glyma.17G201100 Glycine max HOM05D003231 ORTHO05D003865 1.1e-17 93.6 111 55.9
Hma1.2p1_0080F.1_g042200 Hydrangea macrophylla HOM05D003231 ORTHO05D003865 1.4e-17 93.2 96 62.5
Hma1.2p1_1544F.1_g289870 Hydrangea macrophylla HOM05D003231 ORTHO05D003865 1.4e-17 93.2 96 62.5
Nitab4.5_0010241g0010 Nicotiana tabacum HOM05D003231 ORTHO05D003865 1.8e-17 92.8 111 54.1
Hund24844 Selenicereus undatus HOM05D003231 ORTHO05D003865 1.8e-17 92.8 110 56.4
Aa31LG2G19240 Aethionema arabicum HOM05D003231 ORTHO05D003865 2.4e-17 92.4 112 50.9
Aa31LG7G12420 Aethionema arabicum HOM05D003231 ORTHO05D003865 2.4e-17 92.4 103 53.4
CANSAT25G0033 Cannabis sativa HOM05D003231 ORTHO05D003865 2.4e-17 92.4 115 54.8
Glyma.06G075600 Glycine max HOM05D003231 ORTHO05D003865 2.4e-17 92.4 109 51.4
SalBow1G6495 Salvia bowleyana HOM05D003231 ORTHO05D003865 3.1e-17 92.0 111 51.4
THA.LOC104803575 Tarenaya hassleriana HOM05D003231 ORTHO05D003865 3.1e-17 92.0 104 54.8
Sopen06g019710 Solanum pennellii HOM05D003231 ORTHO05D003865 4.1e-17 91.7 102 52.0
VMungo0647G2491 Vigna mungo HOM05D003231 ORTHO05D003865 4.1e-17 91.7 111 53.2
FAN24G1616 Fragaria x ananassa HOM05D003231 ORTHO05D003865 7.0e-17 90.9 101 52.5
C04p53940 Brassica napus HOM05D003231 ORTHO05D003865 9.1e-17 90.5 102 49.0
FvH4_2g30651 Fragaria vesca HOM05D003231 ORTHO05D003865 1.2e-16 90.1 101 52.5
Medtr1g010010 Medicago truncatula HOM05D003231 ORTHO05D003865 1.2e-16 90.1 107 50.5
Solyc06g054650.3 Solanum lycopersicum HOM05D003231 ORTHO05D003865 1.2e-16 90.1 102 52.0
PSO210G3455 Papaver somniferum HOM05D003231 ORTHO05D003865 1.6e-16 89.7 106 50.0
A04p18620 Brassica napus HOM05D003231 ORTHO05D003865 2.0e-16 89.4 102 49.0
Phvul.001G057800 Phaseolus vulgaris HOM05D003231 ORTHO05D003865 2.0e-16 89.4 110 50.9
AT4G31080 Arabidopsis thaliana HOM05D003231 ORTHO05D003865 2.7e-16 89.0 104 51.9
Carub.0004s0366 Capsella rubella HOM05D003231 ORTHO05D003865 2.7e-16 89.0 103 52.4
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 2.7e-16 89.0 101 52.5
Lj5g0000952 Lotus japonicus HOM05D003231 ORTHO05D003865 2.7e-16 89.0 108 50.9
Sp4g03330 Schrenkiella parvula HOM05D003231 ORTHO05D003865 2.7e-16 89.0 103 52.4
BcaC02g08477 Brassica carinata HOM05D003231 ORTHO05D003865 3.5e-16 88.6 102 49.0
BolC4t26942H Brassica oleracea HOM05D003231 ORTHO05D003865 3.5e-16 88.6 102 49.0
Lj1g0002631 Lotus japonicus HOM05D003231 ORTHO05D003865 3.5e-16 88.6 109 52.3
PSO447G0312 Papaver somniferum HOM05D003231 ORTHO05D003865 3.5e-16 88.6 102 51.0
TPR.G12121 Trifolium pratense HOM05D003231 ORTHO05D003865 3.5e-16 88.6 109 52.3
BraA04t17473Z Brassica rapa HOM05D003231 ORTHO05D003865 4.5e-16 88.2 102 50.0
Sp7g28960 Schrenkiella parvula HOM05D003231 ORTHO05D003865 4.5e-16 88.2 104 51.0
Sed0022904 Sechium edule HOM05D003231 ORTHO05D003865 4.5e-16 88.2 103 54.4
THA.LOC104819916 Tarenaya hassleriana HOM05D003231 ORTHO05D003865 4.5e-16 88.2 105 54.3
AL4G14680 Arabidopsis lyrata HOM05D003231 ORTHO05D003865 5.9e-16 87.8 103 51.5
DCAR_019594 Daucus carota HOM05D003231 ORTHO05D003865 5.9e-16 87.8 101 55.4
Glyma.04G074400 Glycine max HOM05D003231 ORTHO05D003865 5.9e-16 87.8 109 49.5
Sed0011155 Sechium edule HOM05D003231 ORTHO05D003865 5.9e-16 87.8 105 54.3
AL7G20980 Arabidopsis lyrata HOM05D003231 ORTHO05D003865 7.7e-16 87.4 104 51.0
Thhalv10000179m.g Eutrema salsugineum HOM05D003231 ORTHO05D003865 7.7e-16 87.4 103 50.5
SalBow6G3063 Salvia bowleyana HOM05D003231 ORTHO05D003865 1.0e-15 87.0 110 50.9
VMungo1309G1009 Vigna mungo HOM05D003231 ORTHO05D003865 1.0e-15 87.0 112 50.0
CDE08G0677 Ceratophyllum demersum HOM05D003231 ORTHO05D000289 1.3e-15 86.7 107 53.3
Carub.0007s0944 Capsella rubella HOM05D003231 ORTHO05D003865 1.7e-15 86.3 104 51.0
Psat5g025840 Pisum sativum HOM05D003231 ORTHO05D003865 1.7e-15 86.3 113 51.3
Sc19g0005970 Simmondsia chinensis HOM05D003231 ORTHO05D003865 2.2e-15 85.9 114 52.6
BcaB03g12675 Brassica carinata HOM05D003231 ORTHO05D003865 3.8e-15 85.1 112 50.9
Ca_12882_v3 Cicer arietinum L. HOM05D003231 ORTHO05D003865 3.8e-15 85.1 108 50.0
MBI18_g03888_MAGBIO Magnolia biondii HOM05D003231 ORTHO05D003865 3.8e-15 85.1 105 54.3
CARHR238990 Cardamine hirsuta HOM05D003231 ORTHO05D003865 8.5e-15 84.0 108 49.1
HanXRQChr03g0079191 Helianthus annuus HOM05D003231 ORTHO05D003865 1.1e-14 83.6 108 49.1
BolC3t21138H Brassica oleracea HOM05D003231 ORTHO05D003865 1.9e-14 82.8 104 51.9
BcaC01g01114 Brassica carinata HOM05D003231 ORTHO05D003865 2.5e-14 82.4 103 52.4
ECA236G1370 Erigeron canadensis HOM05D003231 ORTHO05D003865 3.2e-14 82.0 104 52.9
Thhalv10025341m.g Eutrema salsugineum HOM05D003231 ORTHO05D003865 3.2e-14 82.0 104 48.1
SGA_v2.0_scaffold464G52005 Striga asiatica HOM05D003231 ORTHO05D003865 3.2e-14 82.0 109 50.5
AT2G24330 Arabidopsis thaliana HOM05D003231 ORTHO05D003865 4.2e-14 81.6 103 50.5
Psat6g031880 Pisum sativum HOM05D003231 ORTHO05D003865 5.5e-14 81.3 112 45.5
unitig_748.g7169 Utricularia gibba HOM05D003231 ORTHO05D003865 5.5e-14 81.3 108 50.0
C03p88290 Brassica napus HOM05D003231 ORTHO05D003865 1.2e-13 80.1 103 51.5
Oeu014728.1 Olea europaea HOM05D003231 ORTHO05D003865 1.2e-13 80.1 66 65.2
SGA_v2.0_scaffold63G21827 Striga asiatica HOM05D003231 ORTHO05D003865 1.6e-13 79.7 110 48.2
A08p18890 Brassica napus HOM05D003231 ORTHO05D003865 2.1e-13 79.3 103 50.5
BraA08t33850Z Brassica rapa HOM05D003231 ORTHO05D003865 2.1e-13 79.3 103 50.5
Oeu061897.1 Olea europaea HOM05D003231 ORTHO05D003865 3.6e-13 78.6 110 48.2
HanXRQChr15g0494411 Helianthus annuus HOM05D003231 ORTHO05D003865 8.0e-13 77.4 103 49.5
HPP92_002548 Vanilla planifolia HOM05D003231 ORTHO05D003865 8.0e-13 77.4 104 49.0
Hund19250 Selenicereus undatus HOM05D003231 ORTHO05D003865 1.0e-12 77.0 116 44.8
MBI16_g23305_MAGBIO Magnolia biondii HOM05D003231 ORTHO05D003865 2.3e-12 75.9 109 48.6
Zm00001eb185310 Zea mays HOM05D003231 ORTHO05D003865 5.2e-12 74.7 111 44.1
Os02g0631000 Oryza sativa ssp. japonica HOM05D003231 ORTHO05D003865 1.5e-11 73.2 112 45.5
Sc13g0002750 Simmondsia chinensis HOM05D003231 ORTHO05D003865 2.6e-11 72.4 114 44.7
Zm00001eb247840 Zea mays HOM05D003231 ORTHO05D003865 3.4e-11 72.0 108 44.4
ECA234G4150 Erigeron canadensis HOM05D003231 ORTHO05D003865 1.3e-10 70.1 102 50.0
ATR0693G374 Amborella trichopoda HOM05D003231 ORTHO05D003865 1.7e-10 69.7 66 54.5
EL10Ac3g06791 Beta vulgaris HOM05D003231 ORTHO05D003865 1.7e-10 69.7 105 45.7
Lsat_1_v5_gn_7_103361 Lactuca sativa HOM05D003231 ORTHO05D003865 3.7e-10 68.6 104 45.2
SEGI_37153 Sequoiadendron giganteum HOM05D003231 ORTHO05D003865 6.3e-10 67.8 79 53.2
ATR0796G223 Amborella trichopoda HOM05D003231 ORTHO05D003865 8.3e-10 67.4 66 54.5
CAN.G256.18 Capsicum annuum HOM05D003231 ORTHO05D003865 1.8e-09 66.2 99 46.5
Migut.K00422 Erythranthe guttata HOM05D003231 ORTHO05D003865 1.8e-09 66.2 113 44.2
HanXRQChr17g0548841 Helianthus annuus HOM05D003231 ORTHO05D003865 1.8e-09 66.2 104 43.3
HanXRQChr13g0388911 Helianthus annuus HOM05D003231 ORTHO05D003865 2.4e-09 65.9 103 45.6
Os04g0672900 Oryza sativa ssp. japonica HOM05D003231 ORTHO05D003865 2.4e-09 65.9 103 46.6
Ah.04g153280 Amaranthus hybridus HOM05D003231 ORTHO05D003865 4.1e-09 65.1 102 46.1
AUR62032666 Chenopodium quinoa HOM05D003231 ORTHO05D003865 9.1e-09 63.9 105 42.9
AUR62035301 Chenopodium quinoa HOM05D003231 ORTHO05D003865 9.1e-09 63.9 102 44.1
Ah.13g075260 Amaranthus hybridus HOM05D003231 ORTHO05D003865 1.6e-08 63.2 101 43.6
Lalb_Chr14g0362171 Lupinus albus HOM05D003231 ORTHO05D003865 5.9e-08 61.2 77 51.9
ECA240G4580 Erigeron canadensis HOM05D003231 ORTHO05D003865 1.0e-07 60.5 103 45.6
HanXRQChr10g0304871 Helianthus annuus HOM05D003231 ORTHO05D003865 1.0e-07 60.5 101 43.6
Lsat_1_v5_gn_5_127401 Lactuca sativa HOM05D003231 ORTHO05D003865 1.7e-07 59.7 103 46.6
Zm00001eb066590 Zea mays HOM05D003231 ORTHO05D003865 1.7e-07 59.7 59 54.2
Lsat_1_v5_gn_9_99280 Lactuca sativa HOM05D003231 ORTHO05D003865 3.8e-07 58.5 114 36.0
HPP92_008558 Vanilla planifolia HOM05D003231 ORTHO05D003865 9.5e-06 53.9 111 38.7


User provided reference genes

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