Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 8.3e-40 166.4 74 100.0
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 3.6e-19 97.8 42 97.6
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 4.8e-19 97.4 41 100.0
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.4e-18 95.9 48 83.3
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.4e-18 95.9 48 83.3
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 1.4e-18 95.9 41 97.6
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 1.8e-18 95.5 41 95.1
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.1e-18 94.7 44 86.4
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 4.0e-18 94.4 41 95.1
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 4.0e-18 94.4 41 95.1
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 4.0e-18 94.4 41 95.1
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 4.0e-18 94.4 41 95.1
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 4.0e-18 94.4 41 95.1
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 4.0e-18 94.4 41 95.1
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 5.3e-18 94.0 41 92.7
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 5.3e-18 94.0 41 95.1
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 5.3e-18 94.0 41 95.1
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 5.3e-18 94.0 41 95.1
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 5.3e-18 94.0 41 95.1
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 5.3e-18 94.0 41 95.1
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 5.3e-18 94.0 41 95.1
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 6.9e-18 93.6 41 95.1
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 9.0e-18 93.2 41 92.7
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 9.0e-18 93.2 41 92.7
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.2e-17 92.8 41 92.7
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 1.2e-17 92.8 41 92.7
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.2e-17 92.8 48 79.2
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.2e-17 92.8 41 90.2
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 1.2e-17 92.8 41 90.2
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.5e-17 92.4 41 92.7
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.5e-17 92.4 41 90.2
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 1.5e-17 92.4 41 87.8
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 1.5e-17 92.4 44 88.6
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 1.5e-17 92.4 40 92.5
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-17 92.4 40 92.5
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-17 92.4 40 92.5
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 2.0e-17 92.0 41 90.2
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.0e-17 92.0 41 90.2
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 2.0e-17 92.0 41 90.2
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 2.0e-17 92.0 41 95.1
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 2.6e-17 91.7 41 92.7
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 2.6e-17 91.7 41 92.7
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 2.6e-17 91.7 41 87.8
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 3.4e-17 91.3 41 92.7
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 3.4e-17 91.3 41 92.7
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 3.4e-17 91.3 40 87.5
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 4.5e-17 90.9 41 92.7
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 4.5e-17 90.9 41 90.2
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 4.5e-17 90.9 41 92.7
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 4.5e-17 90.9 41 92.7
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 5.8e-17 90.5 41 90.2
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 5.8e-17 90.5 41 90.2
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 5.8e-17 90.5 40 87.5
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 5.8e-17 90.5 48 79.2
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 5.8e-17 90.5 41 87.8
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 5.8e-17 90.5 41 90.2
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 7.6e-17 90.1 41 90.2
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 7.6e-17 90.1 40 90.0
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 9.9e-17 89.7 41 87.8
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 9.9e-17 89.7 41 87.8
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.3e-16 89.4 41 87.8
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.7e-16 89.0 41 85.4
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.7e-16 89.0 41 87.8
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 1.7e-16 89.0 41 87.8
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 1.7e-16 89.0 41 82.9
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 1.7e-16 89.0 41 82.9
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 1.7e-16 89.0 41 82.9
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.7e-16 89.0 41 87.8
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.7e-16 89.0 41 87.8
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.7e-16 89.0 41 87.8
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 2.2e-16 88.6 41 87.8
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 2.2e-16 88.6 41 85.4
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 2.2e-16 88.6 40 82.5
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.2e-16 88.6 41 85.4
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 2.9e-16 88.2 40 90.0
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 2.9e-16 88.2 41 90.2
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.9e-16 88.2 41 87.8
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.9e-16 88.2 41 87.8
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 2.9e-16 88.2 40 87.5
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 3.8e-16 87.8 49 71.4
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 3.8e-16 87.8 41 85.4
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 3.8e-16 87.8 41 85.4
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 4.9e-16 87.4 41 85.4
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 4.9e-16 87.4 41 85.4
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 4.9e-16 87.4 41 87.8
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 6.4e-16 87.0 41 85.4
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 8.4e-16 86.7 41 87.8
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 8.4e-16 86.7 41 87.8
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 8.4e-16 86.7 41 85.4
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 8.4e-16 86.7 41 82.9
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 1.1e-15 86.3 40 85.0
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.1e-15 86.3 41 82.9
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.4e-15 85.9 41 85.4
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.4e-15 85.9 41 85.4
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.9e-15 85.5 41 85.4
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 1.9e-15 85.5 40 87.5
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 1.9e-15 85.5 41 87.8
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.9e-15 85.5 41 82.9
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.9e-15 85.5 39 79.5
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 1.9e-15 85.5 40 85.0
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 1.9e-15 85.5 39 84.6
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 2.4e-15 85.1 40 80.0
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 2.4e-15 85.1 48 70.8
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 2.4e-15 85.1 49 69.4
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 3.2e-15 84.7 41 82.9
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 3.2e-15 84.7 49 69.4
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.2e-15 84.7 41 82.9
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 3.2e-15 84.7 40 80.0
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 3.2e-15 84.7 41 82.9
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 3.2e-15 84.7 41 82.9
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 4.2e-15 84.3 41 80.5
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 4.2e-15 84.3 41 82.9
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 4.2e-15 84.3 48 72.9
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 5.4e-15 84.0 41 82.9
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 5.4e-15 84.0 41 82.9
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 5.4e-15 84.0 41 82.9
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 5.4e-15 84.0 40 80.0
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.1e-15 83.6 41 85.4
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 9.3e-15 83.2 41 80.5
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 9.3e-15 83.2 48 70.8
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 9.3e-15 83.2 38 78.9
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 9.3e-15 83.2 49 67.3
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 9.3e-15 83.2 41 82.9
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 9.3e-15 83.2 41 82.9
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 1.2e-14 82.8 39 84.6
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 1.2e-14 82.8 41 82.9
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.6e-14 82.4 48 72.9
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.6e-14 82.4 41 85.4
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.6e-14 82.4 41 80.5
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 1.6e-14 82.4 41 75.6
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 2.1e-14 82.0 41 75.6
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 4.6e-14 80.9 40 85.0
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 7.9e-14 80.1 41 80.5
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 1.0e-13 79.7 40 80.0
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.0e-13 79.7 41 80.5
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.0e-13 79.7 41 80.5
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 1.3e-13 79.3 68 57.4
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 1.3e-13 79.3 68 57.4
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 1.8e-13 79.0 40 82.5
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 1.8e-13 79.0 40 82.5
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 2.3e-13 78.6 41 75.6
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 2.3e-13 78.6 41 75.6
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 3.0e-13 78.2 41 78.0
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 3.0e-13 78.2 41 75.6
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 3.9e-13 77.8 32 93.8
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 3.9e-13 77.8 32 93.8
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 3.9e-13 77.8 32 93.8
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.9e-13 77.8 40 82.5
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.9e-13 77.8 32 90.6
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.9e-13 77.8 32 90.6
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 5.1e-13 77.4 40 80.0
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 6.7e-13 77.0 36 80.6
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 8.7e-13 76.6 69 55.1
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 1.1e-12 76.3 32 90.6
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.5e-12 75.9 40 77.5
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 2.5e-12 75.1 41 68.3
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 4.3e-12 74.3 41 73.2
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 5.6e-12 73.9 32 84.4
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.4e-12 73.6 29 93.1
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 7.4e-12 73.6 30 90.0
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 7.4e-12 73.6 32 84.4
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 9.6e-12 73.2 32 84.4
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 9.6e-12 73.2 38 71.1
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.6e-11 72.4 32 78.1
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.8e-11 71.6 32 78.1
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 6.2e-11 70.5 29 86.2
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.1e-11 70.1 32 78.1
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 1.4e-10 69.3 32 78.1
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 1.8e-10 68.9 41 70.7
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 2.4e-10 68.6 35 65.7
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 3.1e-10 68.2 40 67.5
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 5.3e-10 67.4 39 69.2
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 2.6e-09 65.1 41 63.4
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 5.8e-09 63.9 29 79.3
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 7.6e-09 63.5 32 71.9
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 1.7e-08 62.4 28 78.6


User provided reference genes

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