Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 2.0e-148 529.3 297 100.0
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 8.0e-33 145.2 288 36.8
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.5e-31 141.0 254 36.6
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 9.8e-31 138.3 252 35.7
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 6.3e-30 135.6 251 36.3
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 2.0e-28 130.6 330 35.5
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 3.5e-28 129.8 252 38.1
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 7.7e-28 128.6 250 38.4
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 2.9e-27 126.7 252 40.1
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 5.0e-27 125.9 249 40.2
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 8.6e-27 125.2 276 41.3
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 8.6e-27 125.2 260 38.1
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 1.1e-26 124.8 271 36.2
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 1.1e-26 124.8 276 33.3
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 1.5e-26 124.4 272 36.8
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 1.5e-26 124.4 261 34.9
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 4.2e-26 122.9 256 43.8
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 7.2e-26 122.1 281 39.1
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 2.8e-25 120.2 247 36.8
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 2.8e-25 120.2 247 39.7
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 1.4e-24 117.9 257 41.2
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 2.3e-24 117.1 258 35.3
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.2e-23 114.8 239 36.8
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 1.2e-23 114.8 260 34.2
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 4.4e-23 112.8 262 33.6
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 5.7e-23 112.5 246 39.4
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 4.9e-22 109.4 258 33.3
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 6.3e-22 109.0 253 33.6
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 1.1e-21 108.2 259 32.8
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 1.8e-21 107.5 269 34.9
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 5.4e-21 105.9 257 39.7
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 1.6e-20 104.4 259 34.0
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.7e-20 103.6 250 31.6
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 5.9e-20 102.4 254 32.7
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 6.6e-19 99.0 222 34.2
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 1.5e-18 97.8 249 32.9
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 2.5e-18 97.1 247 34.8
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 4.3e-18 96.3 208 34.1
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 1.2e-17 94.7 242 34.7
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 2.8e-17 93.6 256 30.9
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 2.8e-17 93.6 256 33.6
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 2.8e-17 93.6 238 32.8
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 2.8e-17 93.6 257 30.0
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 4.7e-17 92.8 262 30.9
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 1.0e-16 91.7 113 48.7
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 1.8e-16 90.9 257 29.6
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 3.1e-16 90.1 243 32.9
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 2.0e-15 87.4 267 31.5
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 2.6e-15 87.0 211 35.5
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 5.8e-15 85.9 88 52.3
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 7.5e-15 85.5 243 31.7
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 1.3e-14 84.7 259 30.1
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 4.9e-14 82.8 252 28.2
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 6.4e-14 82.4 261 30.3
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 8.3e-14 82.0 249 32.1
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 2.4e-13 80.5 240 32.1
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 4.1e-13 79.7 256 27.7
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 2.0e-12 77.4 239 28.9
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 3.5e-12 76.6 86 52.3
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 4.6e-12 76.3 255 26.7
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 6.0e-12 75.9 263 31.9
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 6.6e-11 72.4 75 49.3
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 6.6e-11 72.4 72 52.8
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 1.9e-10 70.9 60 58.3
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 2.8e-09 67.0 52 59.6
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 4.7e-09 66.2 82 42.7
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 6.2e-09 65.9 249 26.9
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 1.1e-08 65.1 85 44.7
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 1.1e-08 65.1 207 33.3
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 1.2e-07 61.6 32 75.0
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.2e-07 61.6 38 63.2
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 1.2e-07 61.6 38 63.2
Ca_02335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 1.5e-07 61.2 51 54.9
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 2.6e-07 60.5 38 60.5
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 2.6e-07 60.5 246 28.0
RcHm_v2.0_Chr7g0236451 Rosa chinensis HOM05D007421 ORTHO05D009203 2.6e-07 60.5 68 52.9
RcHm_v2.0_Chr7g0236491 Rosa chinensis HOM05D007421 ORTHO05D009203 2.6e-07 60.5 68 52.9
SHI16534 Sapria himalayana HOM05D007421 ORTHO05D009203 2.6e-07 60.5 138 33.3
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 7.5e-07 58.9 51 54.9
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 7.5e-07 58.9 34 64.7
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 7.5e-07 58.9 48 58.3
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 2.2e-06 57.4 34 61.8
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 2.2e-06 57.4 80 37.5
Lalb_Chr12g0208511 Lupinus albus HOM05D007421 ORTHO05D009203 2.9e-06 57.0 94 39.4
Cre03.g172800 Chlamydomonas reinhardtii HOM05D002710 ORTHO05D002905 8.3e-06 55.5 38 57.9
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 8.3e-06 55.5 60 46.7


User provided reference genes

Program Settings