Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.83 Acer truncatum HOM05D007350 ORTHO05D009323 3.0e-73 278.5 145 100.0
Atru.chr5.3441 Acer truncatum HOM05D007350 ORTHO05D009323 7.9e-34 147.5 107 75.7
Haze_02104 Corylus avellana HOM05D007350 ORTHO05D009323 2.6e-21 105.9 109 56.9
Prupe.8G169100 Prunus persica HOM05D007350 ORTHO05D009323 4.5e-21 105.1 109 57.8
Cpa.g.sc20.115 Carica papaya HOM05D007350 ORTHO05D009323 3.8e-20 102.1 97 54.6
Ciclev10029452m.g Citrus clementina HOM05D007350 ORTHO05D009323 1.4e-19 100.1 88 62.5
RcHm_v2.0_Chr6g0278901 Rosa chinensis HOM05D007350 ORTHO05D009323 5.5e-19 98.2 109 54.1
TWI79G1045 Tripterygium wilfordii HOM05D007350 ORTHO05D009323 5.5e-19 98.2 112 55.4
RcHm_v2.0_Chr6g0278921 Rosa chinensis HOM05D007350 ORTHO05D009323 1.2e-18 97.1 109 53.2
FAN24G2045 Fragaria x ananassa HOM05D007350 ORTHO05D009323 4.6e-18 95.1 111 52.3
Thecc.02G055300 Theobroma cacao HOM05D007350 ORTHO05D009323 6.0e-18 94.7 95 55.8
FAN15G0854 Fragaria x ananassa HOM05D007350 ORTHO05D009323 7.9e-18 94.4 111 51.4
FvH4_2g15660 Fragaria vesca HOM05D007350 ORTHO05D009323 1.0e-17 94.0 111 51.4
FAN27G1653 Fragaria x ananassa HOM05D007350 ORTHO05D009323 1.0e-17 94.0 113 50.4
MD10G1127900 Malus domestica HOM05D007350 ORTHO05D009323 1.0e-17 94.0 107 55.1
Manes.04G071000 Manihot esculenta HOM05D007350 ORTHO05D009323 1.0e-17 94.0 111 52.3
Gohir.A03G205900 Gossypium hirsutum HOM05D007350 ORTHO05D009323 3.0e-17 92.4 95 56.8
Gohir.D02G227300 Gossypium hirsutum HOM05D007350 ORTHO05D009323 3.0e-17 92.4 95 56.8
Gorai.005G255200 Gossypium raimondii HOM05D007350 ORTHO05D009323 3.0e-17 92.4 95 56.8
TAR374G1157 Trochodendron aralioides HOM05D007350 ORTHO05D009323 6.7e-17 91.3 105 50.5
Eucgr.G01372 Eucalyptus grandis HOM05D007350 ORTHO05D009323 1.1e-16 90.5 106 47.2
Sc08g0002720 Simmondsia chinensis HOM05D007350 ORTHO05D009323 1.1e-16 90.5 125 45.6
Glyma.19G012500 Glycine max HOM05D007350 ORTHO05D009323 2.5e-16 89.4 115 48.7
Potri.004G177800 Populus trichocarpa HOM05D007350 ORTHO05D009323 4.3e-16 88.6 109 49.5
Sed0025246 Sechium edule HOM05D007350 ORTHO05D009323 4.3e-16 88.6 89 57.3
Nn4g24553 Nelumbo nucifera HOM05D007350 ORTHO05D009323 7.4e-16 87.8 90 55.6
Duzib052G1005 Durio zibethinus HOM05D007350 ORTHO05D009323 9.7e-16 87.4 98 54.1
Dinv09314 Davidia involucrata HOM05D007350 ORTHO05D009323 1.3e-15 87.0 79 55.7
Sabra04G0119700 Salix brachista HOM05D007350 ORTHO05D009323 1.6e-15 86.7 107 49.5
Glyma.13G070400 Glycine max HOM05D007350 ORTHO05D009323 2.2e-15 86.3 90 52.2
ClCG02G003950 Citrullus lanatus HOM05D007350 ORTHO05D009323 2.8e-15 85.9 84 59.5
MBI19_g01918_MAGBIO Magnolia biondii HOM05D007350 ORTHO05D009323 2.8e-15 85.9 84 54.8
MSTRG.20506 Avicennia marina HOM05D007350 ORTHO05D009323 3.7e-15 85.5 89 52.8
MELO3C013337.2 Cucumis melo HOM05D007350 ORTHO05D009323 3.7e-15 85.5 84 58.3
Phvul.004G019500 Phaseolus vulgaris HOM05D007350 ORTHO05D009323 3.7e-15 85.5 90 54.4
QL11p052353 Quercus lobata HOM05D007350 ORTHO05D009323 3.7e-15 85.5 111 46.8
PGR042G2321 Punica granatum HOM05D007350 ORTHO05D009323 6.3e-15 84.7 102 50.0
Actinidia18040 Actinidia chinensis HOM05D007350 ORTHO05D009323 8.2e-15 84.3 106 46.2
Rhsim03G0180300 Rhododendron simsii HOM05D007350 ORTHO05D009323 8.2e-15 84.3 83 56.6
GSVIVG01023973001 Vitis vinifera HOM05D007350 ORTHO05D009323 8.2e-15 84.3 106 51.9
Hma1.2p1_0032F.1_g019200 Hydrangea macrophylla HOM05D007350 ORTHO05D009323 1.4e-14 83.6 101 51.5
CsaV3_7G001160 Cucumis sativus L. HOM05D007350 ORTHO05D009323 1.8e-14 83.2 83 57.8
COL.COLO4_17379 Corchorus olitorius HOM05D007350 ORTHO05D009323 2.4e-14 82.8 94 53.2
CANSAT78G0569 Cannabis sativa HOM05D007350 ORTHO05D009323 3.1e-14 82.4 88 54.5
Actinidia20526 Actinidia chinensis HOM05D007350 ORTHO05D009323 4.1e-14 82.0 107 43.0
arahy.Tifrunner.gnm1.ann1.7M0RFB Arachis hypogaea HOM05D007350 ORTHO05D009323 4.1e-14 82.0 74 59.5
Psat1g060320 Pisum sativum HOM05D007350 ORTHO05D009323 4.1e-14 82.0 91 49.5
Cc09_g10330 Coffea canephora HOM05D007350 ORTHO05D009323 5.3e-14 81.6 91 51.6
Migut.B01238 Erythranthe guttata HOM05D007350 ORTHO05D009323 5.3e-14 81.6 89 53.9
CiPaw.05G085400 Carya illinoinensis HOM05D007350 ORTHO05D009323 6.9e-14 81.3 126 39.7
TPR.G2262 Trifolium pratense HOM05D007350 ORTHO05D009323 6.9e-14 81.3 108 46.3
Lj2g0024385 Lotus japonicus HOM05D007350 ORTHO05D009323 1.2e-13 80.5 121 44.6
Oeu025102.1 Olea europaea HOM05D007350 ORTHO05D009323 1.2e-13 80.5 112 45.5
VMungo0464G1538 Vigna mungo HOM05D007350 ORTHO05D009323 1.2e-13 80.5 74 56.8
PSO063G0872 Papaver somniferum HOM05D007350 ORTHO05D009323 7.7e-13 77.8 78 53.8
PSO782G4816 Papaver somniferum HOM05D007350 ORTHO05D009323 7.7e-13 77.8 78 53.8
CSS0005535 Camellia sinensis var. sinensis HOM05D007350 ORTHO05D009323 1.0e-12 77.4 83 45.8
Aqoxy3G04007 Aquilegia oxysepala HOM05D007350 ORTHO05D009323 1.3e-12 77.0 100 47.0
Ca_04216_v3 Cicer arietinum L. HOM05D007350 ORTHO05D009323 1.7e-12 76.6 82 48.8
Medtr6g007793 Medicago truncatula HOM05D007350 ORTHO05D009323 2.2e-12 76.3 107 43.9
Lalb_Chr02g0159761 Lupinus albus HOM05D007350 ORTHO05D009323 3.8e-12 75.5 90 51.1
ATR0598G093 Amborella trichopoda HOM05D007350 ORTHO05D009323 6.5e-12 74.7 79 53.2
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 5.5e-11 71.6 86 48.8
THA.LOC104807801 Tarenaya hassleriana HOM05D007350 ORTHO05D009323 5.5e-11 71.6 90 48.9
Carub.0007s0037 Capsella rubella HOM05D007350 ORTHO05D009323 7.2e-11 71.2 88 47.7
RcHm_v2.0_Chr6g0278961 Rosa chinensis HOM05D007350 ORTHO05D009323 7.2e-11 71.2 57 57.9
AT4G38490 Arabidopsis thaliana HOM05D007350 ORTHO05D009323 3.6e-10 68.9 88 44.3
BcaC01g00233 Brassica carinata HOM05D007350 ORTHO05D009323 4.6e-10 68.6 86 47.7
AUR62013001 Chenopodium quinoa HOM05D007350 ORTHO05D009323 4.6e-10 68.6 74 51.4
Thhalv10026464m.g Eutrema salsugineum HOM05D007350 ORTHO05D009323 7.9e-10 67.8 86 48.8
AL7G10350 Arabidopsis lyrata HOM05D007350 ORTHO05D009323 1.0e-09 67.4 88 44.3
Hund16245 Selenicereus undatus HOM05D007350 ORTHO05D009323 1.0e-09 67.4 81 49.4
Os09g0450200 Oryza sativa ssp. japonica HOM05D007350 ORTHO05D009323 1.4e-09 67.0 117 41.9
CDE05G3477 Ceratophyllum demersum HOM05D007350 ORTHO05D009323 2.3e-09 66.2 102 41.2
HanXRQChr10g0298081 Helianthus annuus HOM05D007350 ORTHO05D009323 2.3e-09 66.2 95 45.3
Nitab4.5_0002598g0070 Nicotiana tabacum HOM05D007350 ORTHO05D009323 2.3e-09 66.2 90 47.8
SGA_v2.0_scaffold124G33608 Striga asiatica HOM05D007350 ORTHO05D009323 2.3e-09 66.2 86 47.7
CAN.G112.14 Capsicum annuum HOM05D007350 ORTHO05D009323 3.0e-09 65.9 69 53.6
AUR62010011 Chenopodium quinoa HOM05D007350 ORTHO05D009323 3.0e-09 65.9 78 50.0
Sp7g37290 Schrenkiella parvula HOM05D007350 ORTHO05D009323 3.0e-09 65.9 86 46.5
Nitab4.5_0005221g0020 Nicotiana tabacum HOM05D007350 ORTHO05D009323 5.1e-09 65.1 90 46.7
ECA234G1892 Erigeron canadensis HOM05D007350 ORTHO05D009323 1.1e-08 63.9 91 48.4
Lsat_1_v5_gn_4_72021 Lactuca sativa HOM05D007350 ORTHO05D009323 2.0e-08 63.2 72 50.0
CARHR294210 Cardamine hirsuta HOM05D007350 ORTHO05D009323 2.5e-08 62.8 69 49.3
SalBow5G3345 Salvia bowleyana HOM05D007350 ORTHO05D009323 3.3e-08 62.4 64 42.2
Solyc05g050720.4 Solanum lycopersicum HOM05D007350 ORTHO05D009323 3.3e-08 62.4 98 43.9
Sopen05g029130 Solanum pennellii HOM05D007350 ORTHO05D009323 3.3e-08 62.4 98 43.9
A08p24200 Brassica napus HOM05D007350 ORTHO05D009323 1.7e-07 60.1 80 46.2
HPP92_012658 Vanilla planifolia HOM05D007350 ORTHO05D009323 1.7e-07 60.1 64 40.6
BcaC01g00225 Brassica carinata HOM05D007350 ORTHO05D009323 2.2e-07 59.7 75 48.0
unitig_749.g14334 Utricularia gibba HOM05D000730 ORTHO05D000578 2.2e-07 59.7 96 41.7
Hma1.2p1_0032F.1_g019210 Hydrangea macrophylla HOM05D007350 ORTHO05D009323 8.2e-07 57.8 54 63.0
DCAR_004401 Daucus carota HOM05D000250 ORTHO05D000625 1.1e-06 57.4 88 40.9
BolC3t19964H Brassica oleracea HOM05D007350 ORTHO05D009323 1.4e-06 57.0 75 46.7
PGSC0003DMG400006999 Solanum tuberosum HOM05D007350 ORTHO05D009323 2.4e-06 56.2 61 47.5
C03p77120 Brassica napus HOM05D007350 ORTHO05D009323 4.1e-06 55.5 75 45.3
BraA08t34374Z Brassica rapa HOM05D007350 ORTHO05D009323 5.3e-06 55.1 69 47.8


User provided reference genes

Program Settings