Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.737 Acer truncatum HOM05D053160 ORTHO05D018153 2.1e-100 369.0 186 100.0
Atru.chr11.2268 Acer truncatum HOM05D053160 ORTHO05D018153 2.6e-82 308.9 186 88.2
Atru.chr4.2739 Acer truncatum HOM05D002556 ORTHO05D003153 4.6e-63 245.0 138 90.6
Atru.chr4.237 Acer truncatum HOM05D000080 ORTHO05D001194 4.5e-58 228.4 148 82.4
QL06p006973 Quercus lobata HOM05D002556 ORTHO05D003153 1.1e-16 90.9 142 40.8
Ciclev10004184m.g Citrus clementina HOM05D002556 ORTHO05D003153 2.5e-16 89.7 151 43.0
Cfa015509 Carpinus fangiana HOM05D002556 ORTHO05D003153 1.6e-15 87.0 128 49.2
MD16G1176700 Malus domestica HOM05D002556 ORTHO05D003153 1.2e-13 80.9 148 41.9
Manes.03G190200 Manihot esculenta HOM05D002556 ORTHO05D003153 2.6e-13 79.7 144 38.9
TAR362G0960 Trochodendron aralioides HOM05D002556 ORTHO05D018153 2.6e-13 79.7 129 45.0
MD13G1175000 Malus domestica HOM05D002556 ORTHO05D003153 4.4e-13 79.0 148 40.5
Potri.010G014700 Populus trichocarpa HOM05D002556 ORTHO05D003153 5.8e-13 78.6 152 37.5
Sabra10G0010100 Salix brachista HOM05D002556 ORTHO05D003153 7.5e-13 78.2 152 38.8
Thecc.04G275500 Theobroma cacao HOM05D002556 ORTHO05D003153 1.3e-12 77.4 155 38.7
Prupe.1G143500 Prunus persica HOM05D002556 ORTHO05D003153 2.2e-12 76.6 140 43.6
Haze_01041 Corylus avellana HOM05D002556 ORTHO05D003153 1.4e-11 73.9 129 45.0
Dinv38335 Davidia involucrata HOM05D002556 ORTHO05D003153 2.4e-11 73.2 150 37.3
Dinv44438 Davidia involucrata HOM05D002556 ORTHO05D003153 3.2e-11 72.8 134 40.3
Cpa.g.sc183.31 Carica papaya HOM05D002556 ORTHO05D003153 7.0e-11 71.6 145 38.6
CSS0031733 Camellia sinensis var. sinensis HOM05D002556 ORTHO05D003153 9.2e-11 71.2 152 38.2
Duzib151G1179 Durio zibethinus HOM05D002556 ORTHO05D003153 1.6e-10 70.5 154 35.7
TWI09G1603 Tripterygium wilfordii HOM05D002556 ORTHO05D003153 3.5e-10 69.3 143 35.0
FAN22G1976 Fragaria x ananassa HOM05D002556 ORTHO05D003153 1.3e-09 67.4 129 39.5
Manes.15G018000 Manihot esculenta HOM05D002556 ORTHO05D003153 3.0e-09 66.2 146 34.9
CANSAT78G1274 Cannabis sativa HOM05D002556 ORTHO05D003153 5.0e-09 65.5 123 39.8
Gohir.D10G165600 Gossypium hirsutum HOM05D002556 ORTHO05D003153 6.6e-09 65.1 150 34.7
Gorai.011G184800 Gossypium raimondii HOM05D002556 ORTHO05D003153 1.5e-08 63.9 155 33.5
Gohir.A10G102045 Gossypium hirsutum HOM05D002556 ORTHO05D003153 3.3e-08 62.8 155 32.3
TAR636G3468 Trochodendron aralioides HOM05D002556 ORTHO05D003153 3.3e-08 62.8 146 38.4
Duzib212G1036 Durio zibethinus HOM05D002556 ORTHO05D003153 4.3e-08 62.4 150 34.7
CiPaw.01G154300 Carya illinoinensis HOM05D002556 ORTHO05D003153 5.6e-08 62.0 151 36.4
RcHm_v2.0_Chr4g0420701 Rosa chinensis HOM05D002556 ORTHO05D003153 7.3e-08 61.6 128 33.6
FAN07G2116 Fragaria x ananassa HOM05D002556 ORTHO05D003153 1.6e-07 60.5 164 34.8
COL.COLO4_13950 Corchorus olitorius HOM05D002556 ORTHO05D003153 2.8e-07 59.7 129 34.9
FvH4_4g17010 Fragaria vesca HOM05D002556 ORTHO05D003153 6.2e-07 58.5 129 38.8
FAN12G2677 Fragaria x ananassa HOM05D002556 ORTHO05D003153 6.2e-07 58.5 129 38.8
Lj6C667G18 Lonicera japonica HOM05D002556 ORTHO05D003153 1.4e-06 57.4 153 35.9
CSS0029361 Camellia sinensis var. sinensis HOM05D002556 ORTHO05D003153 3.1e-06 56.2 153 32.0
CSS0044142 Camellia sinensis var. sinensis HOM05D002556 ORTHO05D003153 3.1e-06 56.2 153 32.0
FAN12G0875 Fragaria x ananassa HOM05D002556 ORTHO05D003153 4.0e-06 55.8 129 38.0
FAN17G1599 Fragaria x ananassa HOM05D002556 ORTHO05D003153 5.2e-06 55.5 163 30.7
CiPaw.02G087500 Carya illinoinensis HOM05D002556 ORTHO05D003153 6.8e-06 55.1 153 33.3
Lju2000A0T43 Lonicera japonica HOM05D002556 ORTHO05D018153 6.8e-06 55.1 153 32.7


User provided reference genes

Program Settings