Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.3e-71 273.1 148 100.0
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 9.1e-54 213.8 148 77.0
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 5.9e-53 211.1 148 76.4
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 2.2e-52 209.1 148 76.4
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 5.0e-52 208.0 148 75.7
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.1e-51 206.8 148 75.0
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-51 206.1 148 75.7
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 74.3
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 73.6
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 73.0
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 7.2e-51 204.1 148 75.0
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 2.1e-50 202.6 148 73.6
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 3.6e-50 201.8 148 73.0
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 4.7e-50 201.4 148 74.3
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 6.1e-50 201.1 148 73.6
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 6.1e-50 201.1 148 71.6
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.0e-49 200.3 148 73.0
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.4e-49 199.9 148 70.9
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.8e-49 199.5 148 72.3
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 1.8e-49 199.5 147 72.8
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 2.3e-49 199.1 148 71.6
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.3e-49 199.1 148 70.9
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.3e-49 199.1 148 70.9
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.5e-48 196.4 148 73.0
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 3.4e-48 195.3 148 70.9
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 3.4e-48 195.3 148 73.6
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.4e-48 194.9 144 73.6
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 4.4e-48 194.9 148 70.9
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 7.5e-48 194.1 148 73.6
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 9.8e-48 193.7 148 68.2
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.7e-47 191.8 144 72.2
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.8e-47 191.4 143 72.7
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 1.4e-46 189.9 143 71.3
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 2.4e-46 189.1 148 69.6
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 4.1e-46 188.3 148 68.2
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 9.1e-46 187.2 143 71.3
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.6e-45 186.4 148 68.9
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 4.5e-45 184.9 148 66.2
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 5.0e-44 181.4 150 69.3
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 6.5e-44 181.0 148 67.6
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 8.6e-44 180.6 142 69.7
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.3e-43 178.7 150 64.7
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 7.2e-43 177.6 150 64.0
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 9.5e-43 177.2 152 63.2
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 9.5e-43 177.2 145 64.1
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.8e-42 175.6 148 63.5
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 2.8e-42 175.6 148 71.6
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.0e-41 173.7 137 69.3
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 2.3e-41 172.6 150 64.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 4.0e-41 171.8 148 64.9
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 4.0e-41 171.8 150 66.7
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 9.8e-40 167.2 148 62.2
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.3e-39 166.8 143 65.0
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.3e-39 166.8 152 64.5
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 4.9e-39 164.9 142 64.1
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 8.3e-39 164.1 120 75.0
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-38 163.7 149 62.4
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.1e-38 163.7 149 62.4
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 1.4e-38 163.3 119 73.9
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 2.4e-38 162.5 151 62.3
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.1e-38 162.2 119 73.9
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 3.1e-38 162.2 119 73.9
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 3.1e-38 162.2 150 60.0
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 3.1e-38 162.2 151 62.9
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.1e-38 161.8 149 62.4
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 4.1e-38 161.8 151 62.9
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 7.0e-38 161.0 140 58.6
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 3.5e-37 158.7 155 60.6
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 7.8e-37 157.5 148 60.8
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.0e-36 157.1 149 65.1
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-36 156.4 121 69.4
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 2.9e-36 155.6 121 71.9
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 5.0e-36 154.8 152 61.8
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 6.6e-36 154.5 119 68.1
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.5e-35 153.3 148 58.1
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.5e-35 153.3 150 59.3
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-35 152.9 114 72.8
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 3.3e-35 152.1 148 57.4
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 4.3e-35 151.8 138 59.4
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 7.3e-35 151.0 150 59.3
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 9.5e-35 150.6 142 61.3
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.5e-35 150.6 144 59.7
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.2e-34 150.2 114 71.9
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 2.8e-34 149.1 132 65.2
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.6e-34 148.7 150 58.7
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 8.0e-34 147.5 138 61.6
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 1.0e-33 147.1 148 56.8
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.8e-33 146.4 114 70.2
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 6.8e-33 144.4 148 56.8
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 57.4
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 1.2e-32 143.7 148 55.4
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 1.2e-32 143.7 148 56.1
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 55.4
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 55.4
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 55.4
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 55.4
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 55.4
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 2.0e-32 142.9 148 56.1
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.0e-32 142.9 148 57.4
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.4e-32 141.7 118 66.9
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 5.8e-32 141.4 148 55.4
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.3e-31 140.2 141 53.2
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 2.9e-31 139.0 148 53.4
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 4.9e-31 138.3 149 51.7
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 6.4e-31 137.9 150 55.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 6.4e-31 137.9 150 55.3
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 9.2e-30 134.0 148 53.4
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 2.0e-29 132.9 149 56.4
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.6e-29 131.7 151 54.3
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 4.6e-29 131.7 151 50.3
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.5e-27 126.7 119 58.0
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 3.3e-27 125.6 112 60.7
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 6.2e-26 121.3 111 61.3
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 2.3e-25 119.4 149 52.3
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 9.8e-24 114.0 148 42.6
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.9e-23 112.5 125 51.2
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 7.8e-21 104.4 75 73.3
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.3e-20 102.8 79 68.4
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.1e-19 100.5 119 52.1
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 1.2e-16 90.5 73 69.9
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 2.6e-16 89.4 88 59.1
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 9.9e-16 87.4 103 53.4
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 4.9e-15 85.1 89 55.1
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-14 83.2 103 50.5
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 4.6e-13 78.6 92 55.4
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.0e-13 78.2 69 63.8
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 1.3e-12 77.0 53 73.6
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.5e-11 73.6 92 53.3
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.2e-10 70.5 60 63.3
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 5.2e-09 65.1 136 36.0
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 1.1e-06 57.4 73 54.8
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.2e-06 55.5 126 41.3
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 4.2e-06 55.5 126 41.3


User provided reference genes

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