Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 2.7e-67 259.6 277 100.0
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.3e-37 161.0 203 79.3
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.9e-36 157.1 204 67.6
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.4e-34 151.0 283 64.3
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.8e-34 150.6 204 75.0
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.3e-33 146.4 203 74.9
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 9.7e-33 144.8 204 75.0
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 9.7e-33 144.8 283 66.8
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.7e-32 144.1 283 64.3
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 2.8e-32 143.3 283 68.2
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 4.8e-32 142.5 280 64.3
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 6.3e-32 142.1 283 73.9
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 8.2e-32 141.7 283 66.8
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 8.2e-32 141.7 205 76.6
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 1.8e-31 140.6 203 73.4
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 7.0e-31 138.7 204 71.6
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 9.1e-31 138.3 200 73.5
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.2e-30 137.9 283 62.5
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 5.9e-30 135.6 285 58.6
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.2e-29 133.7 282 55.0
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 6.5e-29 132.1 204 73.0
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 6.5e-29 132.1 304 61.2
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.9e-28 130.6 201 70.1
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 3.2e-28 129.8 201 72.1
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 4.2e-28 129.4 280 73.2
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 2.7e-27 126.7 204 70.6
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 4.7e-27 125.9 204 65.7
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 4.7e-27 125.9 204 73.5
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 6.1e-27 125.6 201 67.2
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 8.0e-27 125.2 201 71.6
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.4e-26 124.4 169 72.8
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 5.2e-26 122.5 114 67.5
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.5e-25 120.9 203 65.0
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 2.0e-25 120.6 281 64.4
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 2.6e-25 120.2 195 72.8
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 3.4e-25 119.8 204 69.1
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 4.4e-25 119.4 204 67.6
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 9.8e-25 118.2 161 81.4
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.7e-24 117.5 283 62.2
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.7e-24 117.5 283 62.9
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 3.7e-24 116.3 282 60.6
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 4.8e-24 115.9 204 70.6
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.1e-23 114.8 204 58.3
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 1.1e-23 114.8 204 66.7
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.1e-23 114.8 280 61.8
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 1.1e-23 114.8 203 70.9
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.4e-23 113.6 117 65.8
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.4e-23 113.6 117 65.8
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.1e-23 113.2 201 68.7
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 5.4e-23 112.5 205 61.5
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.2e-22 111.3 270 50.4
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 1.6e-22 110.9 204 65.2
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 1.6e-22 110.9 193 68.9
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.0e-22 110.5 103 64.1
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 2.7e-22 110.2 204 65.2
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 2.7e-22 110.2 204 51.5
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 3.5e-22 109.8 204 58.3
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 4.5e-22 109.4 182 46.7
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 5.9e-22 109.0 115 68.7
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 5.9e-22 109.0 283 62.9
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 2.5e-20 103.6 206 67.5
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 3.2e-20 103.2 154 62.3
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 5.5e-20 102.4 201 64.2
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 7.2e-20 102.1 199 59.3
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 3.6e-19 99.8 161 68.3
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 3.6e-19 99.8 161 68.3
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 4.7e-19 99.4 194 67.0
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 6.1e-19 99.0 212 57.1
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 8.0e-19 98.6 212 53.3
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 8.0e-19 98.6 205 65.9
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.4e-18 97.8 189 60.8
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 1.8e-18 97.4 74 73.0
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.3e-18 97.1 191 62.3
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 4.0e-18 96.3 204 55.9
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 5.2e-18 95.9 212 52.4
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 5.2e-18 95.9 160 75.0
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 6.8e-18 95.5 150 66.7
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 1.2e-17 94.7 184 65.8
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 2.0e-17 94.0 160 64.4
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.0e-17 94.0 194 67.5
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 3.4e-17 93.2 161 70.8
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 4.4e-17 92.8 105 65.7
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 7.5e-17 92.0 221 53.8
Ciclev10002126m.g Citrus clementina HOM05D003347 ORTHO05D003821 2.2e-16 90.5 277 64.6
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 2.2e-16 90.5 202 57.9
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 3.7e-16 89.7 115 56.5
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 3.7e-16 89.7 193 60.6
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 3.7e-16 89.7 161 62.7
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.7e-16 89.7 205 58.5
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 4.9e-16 89.4 206 64.6
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 4.9e-16 89.4 192 56.8
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 4.9e-16 89.4 205 62.0
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 8.3e-16 88.6 91 64.8
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 1.1e-15 88.2 159 70.4
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.1e-15 88.2 164 72.6
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.1e-15 88.2 193 40.4
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.1e-15 88.2 72 73.6
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 1.4e-15 87.8 193 60.6
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.4e-15 87.8 205 66.3
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.4e-15 87.8 117 54.7
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 1.8e-15 87.4 169 62.7
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.8e-15 87.4 69 75.4
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 3.1e-15 86.7 204 58.8
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.1e-15 86.7 205 65.4
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 4.1e-15 86.3 152 73.7
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 4.1e-15 86.3 108 51.9
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 7.0e-15 85.5 196 60.2
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 7.0e-15 85.5 84 63.1
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 1.6e-14 84.3 217 56.7
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 2.0e-14 84.0 205 64.4
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.0e-14 84.0 205 64.4
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 2.0e-14 84.0 283 61.8
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.7e-14 83.6 159 72.3
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 2.7e-14 83.6 194 54.6
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 2.7e-14 83.6 159 71.7
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 4.5e-14 82.8 212 56.1
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 4.5e-14 82.8 175 58.9
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 4.5e-14 82.8 117 53.0
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 1.3e-13 81.3 72 62.5
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 1.7e-13 80.9 212 53.8
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 2.3e-13 80.5 196 58.7
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 3.8e-13 79.7 116 54.3
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 3.8e-13 79.7 200 53.0
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 3.8e-13 79.7 283 55.8
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 3.8e-13 79.7 152 69.7
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 5.0e-13 79.3 205 63.9
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 5.0e-13 79.3 118 55.1
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.0e-13 79.3 195 62.6
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 1.1e-12 78.2 238 46.2
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 1.1e-12 78.2 186 60.8
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 1.9e-12 77.4 73 57.5
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 5.6e-12 75.9 72 63.9
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 9.5e-12 75.1 160 53.8
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.6e-11 74.3 133 75.9
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 6.1e-11 72.4 95 54.7
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 8.0e-11 72.0 158 51.3
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 1.0e-10 71.6 156 50.6
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 1.0e-10 71.6 58 70.7
Mapoly0020s0030 Marchantia polymorpha HOM05D003347 ORTHO05D003821 1.0e-10 71.6 194 61.3
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 3.0e-10 70.1 72 54.2
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 5.2e-10 69.3 196 49.0
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 6.8e-10 68.9 113 48.7
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 1.2e-09 68.2 74 58.1
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 1.2e-09 68.2 201 54.7
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.5e-09 67.8 73 50.7
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 2.0e-09 67.4 90 50.0
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.0e-09 67.4 134 69.4
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.4e-09 66.6 99 44.4
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 3.4e-09 66.6 274 46.7
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 5.7e-09 65.9 134 57.5
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 2.9e-08 63.5 92 48.9
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 2.9e-08 63.5 175 64.6
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 2.9e-08 63.5 70 54.3
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 4.9e-08 62.8 72 55.6
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 6.4e-08 62.4 193 46.6
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 1.1e-07 61.6 109 45.0
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.4e-07 61.2 193 45.1
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 2.4e-07 60.5 73 49.3
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 3.2e-07 60.1 103 46.6
FvH4_1g25270 Fragaria vesca HOM05D003347 ORTHO05D003821 4.1e-07 59.7 67 49.3
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 4.1e-07 59.7 231 47.6
Sabra01G0163000 Salix brachista HOM05D003347 ORTHO05D003821 4.1e-07 59.7 161 67.1
Sabra19G0015000 Salix brachista HOM05D003347 ORTHO05D003821 5.4e-07 59.3 51 60.8
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 7.0e-07 58.9 150 56.0
Dinv06006 Davidia involucrata HOM05D003347 ORTHO05D003821 9.2e-07 58.5 58 72.4
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 9.2e-07 58.5 101 47.5
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 1.6e-06 57.8 225 50.2
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.6e-06 56.2 193 45.1
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 4.6e-06 56.2 117 39.3
SalBow5G2549 Salvia bowleyana HOM05D003347 ORTHO05D003821 4.6e-06 56.2 100 43.0
SEGI_27842 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 7.8e-06 55.5 166 62.0


User provided reference genes

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